mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 75,042 | T→C | 3.8% | S147G (AGC→GGC) | thiB ← | thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein |
| RA | 91,112 | Δ1 bp | 2.9% | coding (81/366 nt) | ftsL → | membrane bound cell division leucine zipper septum protein |
| RA | 188,371 | C→T | 2.5% | G94S (GGC→AGC) | glnD ← | uridylyltransferase |
| RA | 285,198 | Δ1 bp | 3.1% | intergenic (+30/‑197) | yagF → / → yagG | CP4‑6 prophage, dehydratase family protein/CP4‑6 prophage, putative sugar transporter |
| RA | 285,199 | Δ1 bp | 3.1% | intergenic (+31/‑196) | yagF → / → yagG | CP4‑6 prophage, dehydratase family protein/CP4‑6 prophage, putative sugar transporter |
| RA | 325,458 | Δ1 bp | 2.6% | intergenic (‑94/+119) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
| RA | 377,431:1 | +A | 2.7% | intergenic (+120/+104) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 377,432 | C→G | 3.1% | intergenic (+121/+103) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 377,451 | T→A | 2.5% | intergenic (+140/+84) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 509,839 | G→A | 3.5% | A514V (GCC→GTC) | copA ← | copper transporter |
| RA | 509,844 | T→C | 3.5% | Q512Q (CAA→CAG) | copA ← | copper transporter |
| JC | 700,783 | Δ9 bp | 9.4% | coding (804‑812/1221 nt) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 701,378:1 | +T | 4.1% | coding (217/1221 nt) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 702,331 | Δ1 bp | 8.1% | coding (421/1149 nt) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 982,776 | T→A | 2.7% | L577Q (CTG→CAG) | ldtD → | murein L,D‑transpeptidase |
| RA | 1,034,228 | G→T | 2.8% | A325A (GCG→GCT) | hyaB → | hydrogenase 1, large subunit |
| RA | 1,158,171 | Δ1 bp | 9.2% | coding (303/1434 nt) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,158,383 | G→A | 14.2% | W172* (TGG→TAG) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| JC | 1,159,286:1 | +GTA | 7.8% | coding (1418/1434 nt) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,240,971 | G→C | 4.2% | V367V (GTC→GTG) | cvrA ← | putative cation/proton antiporter |
| RA | 1,269,785 | G→A | 3.4% | T9I (ACT→ATT) | ldrB ← | toxic polypeptide, small |
| RA | 1,464,842 | A→G | 2.6% | K124K (AAA→AAG) | paaY → | thioesterase required for phenylacetic acid degradation, trimeric, phenylacetate regulatory and detoxification protein, hexapeptide repeat protein |
| RA | 1,466,201 | T→C | 4.0% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,617,802:1 | +A | 2.7% | coding (775/1191 nt) | ydeA → | arabinose efflux transporter, arabinose‑inducible |
| RA | 1,708,662 | C→G | 5.8% | Q582E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,718 | G→A | 10.2% | A600A (GCG→GCA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,748 | G→C | 7.3% | A610A (GCG→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,751 | A→G | 9.7% | E611E (GAA→GAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,930 | C→A | 6.7% | P671Q (CCG→CAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,973 | T→C | 5.8% | A685A (GCT→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,745,063 | Δ1 bp | 2.5% | coding (1065/1257 nt) | ydhQ ← | autotransporter adhesin‑related protein |
| RA | 1,947,040 | Δ1 bp | 2.6% | coding (337/522 nt) | ruvC ← | component of RuvABC resolvasome, endonuclease |
| RA | 1,964,263:1 | +G | 2.8% | coding (788/2079 nt) | flhA ← | putative flagellar export pore protein |
| RA | 2,012,757 | A→T | 3.8% | I86I (ATT→ATA) | fliE ← | flagellar basal‑body component |
| RA | 2,131,514 | T→C | 6.8% | E186G (GAG→GGG) | wcaC ← | putative glycosyl transferase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,297,368 | G→A | 3.2% | T92M (ACG→ATG) | ccmA ← | heme export ABC transporter ATPase |
| RA | 2,304,678 | T→C | 9.4% | intergenic (+287/+428) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,314,714 | C→A | 3.8% | A410E (GCG→GAG) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,368,244 | C→T | 3.0% | R70C (CGC→TGC) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,375,995 | Δ1 bp | 2.6% | coding (823/858 nt) | menB ← | dihydroxynaphthoic acid synthetase |
| RA | 2,375,996 | Δ1 bp | 2.6% | coding (822/858 nt) | menB ← | dihydroxynaphthoic acid synthetase |
| RA | 2,375,997 | Δ1 bp | 2.6% | coding (821/858 nt) | menB ← | dihydroxynaphthoic acid synthetase |
| RA | 2,477,020 | T→G | 2.6% | D203A (GAC→GCC) | dsdC ← | dsd operon activator, autorepressor |
| RA | 2,528,973 | T→C | 5.4% | E401G (GAG→GGG) | ligA ← | DNA ligase, NAD(+)‑dependent |
| RA | 2,566,735 | T→C | 3.8% | S50G (AGT→GGT) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,619,724 | A→C | 9.9% | G145G (GGT→GGG) | uraA ← | uracil permease |
| RA | 2,942,491 | G→A | 2.8% | R25R (CGC→CGT) | gcvA ← | glycine cleavage system transcriptional activator, autorepressor |
| RA | 3,088,199 | C→A | 8.6% | intergenic (+341/‑83) | metK → / → galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| RA | 3,127,226 | T→C | 5.2% | E265G (GAG→GGG) | glcD ← | glycolate oxidase subunit, FAD‑linked |
| RA | 3,233,187 | G→T | 9.6% | D509Y (GAT→TAT) | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,271,939 | C→A | 2.8% | G271C (GGT→TGT) | garR ← | tartronate semialdehyde reductase |
| RA | 3,320,743 | T→A | 2.6% | H290L (CAT→CTT) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| RA | 3,381,847 | A→C | 2.8% | E369D (GAA→GAC) | degQ → | serine endoprotease, periplasmic |
| RA | 3,495,036 | C→A | 4.1% | A343E (GCA→GAA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,758,153 | C→T | 2.6% | A570T (GCG→ACG) | selB ← | selenocysteinyl‑tRNA‑specific translation factor |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,858,205 | G→A | 3.4% | Q67* (CAG→TAG) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,206 | G→T | 3.0% | N66K (AAC→AAA) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,210 | G→C | 4.0% | A65G (GCT→GGT) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,212:1 | +G | 3.5% | coding (192/1494 nt) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,215 | G→T | 3.9% | I63I (ATC→ATA) ‡ | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,216 | A→C | 3.9% | I63S (ATC→AGC) ‡ | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,220 | Δ1 bp | 3.6% | coding (184/1494 nt) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,222 | G→C | 3.6% | T61S (ACC→AGC) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,226 | A→C | 3.3% | F60V (TTT→GTT) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,858,227 | T→C | 4.2% | L59L (CTA→CTG) | yidJ ← | sulfatase/phosphatase superfamily protein |
| MC JC | 3,909,311 | Δ774 bp | 100% | [pstA]–[pstC] | [pstA], [pstC] | |
| MC JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,171,647 | A→C | 100% | noncoding (12/120 nt) | rrfB → | 5S ribosomal RNA of rrnB operon |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,219,160 | T→C | 7.1% | L189P (CTC→CCC) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,295,833 | T→C | 3.2% | intergenic (+40/+604) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,154 | T→C | 14.5% | intergenic (+361/+283) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,189 | A→G | 39.3% | intergenic (+396/+248) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,190 | A→C | 42.8% | intergenic (+397/+247) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,326,089 | T→G | 6.7% | intergenic (‑347/+311) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4110689 | 4111531 | 843 | 77 [70] | [73] 86 | tpiA | tpiA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225468 = | 66 (0.380) | 6 (0.040) | 4/490 | NT | 11.6% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | = 3427066 | 28 (0.170) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 175 (1.040) | 112/492 | NT | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 175 (1.010) | 95/508 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 273955 = | NA (NA) | 5 (0.030) | 5/508 | NT | 3.4% | intergenic (+1/+146) | ykfC/insH1 | CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator |
| ? | NC_000913 | = 700631 | 144 (0.830) | coding (964/1221 nt) | nagC | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor | |||||
| * | ? | NC_000913 | 607741 = | 113 (0.650) | 4 (0.020) | 4/490 | NT | 3.5% | noncoding (8/59 nt) | sokE | sRNA at remnant mokE/hokE locus |
| ? | NC_000913 | 607775 = | 110 (0.660) | noncoding (42/59 nt) | sokE | sRNA at remnant mokE/hokE locus | |||||
| * | ? | NC_000913 | = 689044 | NA (NA) | 4 (0.020) | 4/506 | NT | 2.7% | intergenic (‑31/+299) | insH1/lnt | IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase |
| ? | NC_000913 | 700627 = | 147 (0.850) | coding (968/1221 nt) | nagC | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor | |||||
| * | ? | NC_000913 | 762116 = | 149 (0.860) | 6 (0.040) | 3/480 | NT | 3.6% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 183 (1.120) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | 1207790 = | 110 (0.640) | 35 (0.220) | 30/476 | NT | 27.7% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 80 (0.490) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 101 (0.580) | 50 (0.310) | 39/476 | NT | 36.4% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 80 (0.490) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 2 (0.010) | 168 (0.970) | 94/508 | NT | 98.8% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 112 (0.660) | 70/500 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1387098 | 154 (0.890) | 4 (0.020) | 3/496 | NT | 2.6% | coding (379/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator, autorepressor, ATPase, phosphatase |
| ? | NC_000913 | = 1387248 | 154 (0.910) | coding (529/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator, autorepressor, ATPase, phosphatase | |||||
| * | ? | NC_000913 | 1580855 = | 151 (0.870) | 8 (0.050) | 4/506 | NT | 5.1% | coding (1670/1683 nt) | ydeN | putative Ser‑type periplasmic non‑aryl sulfatase |
| ? | NC_000913 | = 2290110 | NA (NA) | intergenic (‑31/+2) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 1606079 = | 134 (0.770) | 4 (0.020) | 4/508 | NT | 2.9% | intergenic (+6/‑21) | lsrB/lsrF | autoinducer 2‑binding protein/putative autoinducer‑2 (AI‑2) aldolase |
| ? | NC_000913 | = 2070271 | NA (NA) | intergenic (‑91/‑6) | insC1/yoeA | IS2 repressor TnpA/CP4‑44 prophage, putative disrupted hemin or colicin receptor,Phage or Prophage Related, interrupted by IS2 and C‑terminal deletion | |||||
| * | ? | NC_000913 | = 1606084 | 131 (0.760) | 5 (0.030) | 5/506 | NT | 3.7% | intergenic (+11/‑16) | lsrB/lsrF | autoinducer 2‑binding protein/putative autoinducer‑2 (AI‑2) aldolase |
| ? | NC_000913 | = 1651547 | NA (NA) | intergenic (+10/‑4) | insD1/intQ | IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1828681 | 117 (0.680) | 4 (0.020) | 3/490 | NT | 3.3% | coding (1054/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | NC_000913 | = 1828695 | 124 (0.740) | coding (1040/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 107 (0.640) | 70/492 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 129 (0.750) | 81/508 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 166 (0.960) | 93/508 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 2068941 = | NA (NA) | 5 (0.030) | 5/508 | NT | 2.5% | intergenic (+1/+11) | yoeA/insD1 | CP4‑44 prophage, putative disrupted hemin or colicin receptor,Phage or Prophage Related, interrupted by IS2 and C‑terminal deletion/IS2 transposase TnpB |
| ? | NC_000913 | 2241409 = | 195 (1.130) | coding (258/1041 nt) | galS | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor, mgl operon transcriptional repressor, autorepressor | |||||
| * | ? | NC_000913 | = 2894650 | 174 (1.010) | 4 (0.020) | 4/502 | NT | 2.6% | coding (457/576 nt) | ygcP | putative antiterminator regulatory protein |
| ? | NC_000913 | = 2894929 | 131 (0.770) | coding (849/861 nt) | ygcQ | putative flavoprotein | |||||
| * | ? | NC_000913 | 2996359 = | NA (NA) | 5 (0.030) | 5/508 | NT | 3.7% | intergenic (‑1/+11) | ygeO/insD1 | pseudogene, orgA family, part of T3SS PAI ETT2 remnant/IS2 transposase TnpB |
| ? | NC_000913 | 3368707 = | 130 (0.750) | coding (883/1128 nt) | yhcG | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily | |||||
| * | ? | NC_000913 | = 3220244 | 178 (1.030) | 5 (0.030) | 5/488 | NT | 2.7% | coding (753/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 3220396 | 188 (1.130) | coding (905/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | 3270591 = | 93 (0.540) | 3 (0.020) | 3/492 | NT | 3.3% | intergenic (‑1/+32) | rnpB/garK | RNase P, M1 RNA component/glycerate kinase I |
| ? | NC_000913 | 3270619 = | 85 (0.510) | intergenic (‑29/+4) | rnpB/garK | RNase P, M1 RNA component/glycerate kinase I | |||||
| * | ? | NC_000913 | = 3381845 | 157 (0.910) | 9 (0.050) | 8/490 | NT | 5.6% | coding (1105/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | NC_000913 | = 3381857 | 153 (0.920) | coding (1117/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | NC_000913 | 4295831 = | NA (NA) | 5 (0.030) | 5/430 | NT | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296395 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||