mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,214,658 | 0 | A | G | 26.0% | 119.9 / 16.6 | 82 | E538E (GAA→GAG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| Marginal new junction evidence (lowest skew 10 of 50 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 72 (0.850) | 14 (0.190) | 13/252 | 6.5 | 16.5% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 78 (1.040) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 69 (0.820) | 12 (0.160) | 11/252 | 7.3 | 14.9% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 76 (1.020) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 5 (0.060) | 5/266 | 11.0 | NA | coding (498/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274663 = | NA (NA) | coding (455/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 25 (0.310) | 5/272 | 11.2 | NA | coding (456/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | = 1428264 | NA (NA) | coding (463/981 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1670967 | 71 (0.840) | 4 (0.050) | 4/258 | 11.4 | 5.8% | intergenic (+15/‑409) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein |
| ? | NC_000913 | = 1670981 | 65 (0.850) | intergenic (+29/‑395) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | NC_000913 | 3832177 = | NA (NA) | 4 (0.050) | 4/264 | 11.6 | NA | noncoding (1/27 nt) | REP277 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP277 (repetitive extragenic palindromic) element, contains 1 REP sequences |
| ? | NC_000913 | 3832204 = | NA (NA) | intergenic (+39/+14) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase | |||||
| * | ? | NC_000913 | = 431106 | NA (NA) | 4 (0.050) | 4/262 | 11.6 | NA | intergenic (+154/+23) | yajD/tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| ? | NC_000913 | = 431111 | NA (NA) | intergenic (+159/+18) | yajD/tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K | |||||
| * | ? | NC_000913 | = 3091095 | 90 (1.070) | 4 (0.050) | 4/266 | 11.7 | 4.5% | intergenic (+43/‑37) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3091101 | 84 (1.070) | intergenic (+49/‑31) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 2066832 | 25 (0.300) | 6 (0.080) | 4/266 | 11.7 | 20.4% | coding (490/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | = 2102447 | NA (NA) | coding (465/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 845711 | NA (NA) | 5 (0.060) | 4/270 | 11.8 | NA | noncoding (81/99 nt) | RIP78 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP78 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 845722 | NA (NA) | noncoding (92/99 nt) | RIP78 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP78 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||