| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 62,822 | Δ16 bp | coding (428‑443/2907 nt) | rapA ← | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 62822 | 62837 | 16 | 57 [0] | [0] 57 | rapA | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 62821 | 0 (0.000) | 55 (0.950) | 48/280 | 0.1 | 100% | coding (444/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase |
| ? | NC_000913 | 62838 = | 0 (0.000) | coding (427/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase | |||||
GTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/62682‑62821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG > NC_000913/62838‑62978 GTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGCTGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGgc > 1:277529/1‑141 ATGCAGGATCACCCGGGCTTCCATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAA < 2:199480/143‑1 cagCCCGGCTTCGATGGTTTTCCCTAAACCCACGTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCGTGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCT < 2:79866/140‑1 cgatgttgTTCCCTAGATCCACTTCGTCTGCCAGCAGGATGCGCGGCGCGTGGCGGCGACCAACATCAGTGTCGATGGTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTAC < 1:271542/135‑1 CAATGGTGGTCCCGAAGCCGCCTGCGTCCGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTGAC < 1:412550/143‑1 ATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACCCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCAGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGC > 2:398072/1‑143 GGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGAACGGACCACGGAACTGTTAGACGCTATATTTACGCGC > 1:873818/1‑143 CCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATA < 2:947928/143‑1 CTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATGAC > 1:931091/1‑143 TAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCCCGATAACG > 2:767299/1‑143 AACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCA < 2:544547/143‑1 CCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGTGGGGGCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTCCGAGCGCGATAACGCAGC > 2:609450/1‑143 CCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGC < 2:919984/143‑1 ACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCA < 1:398303/143‑1 TTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAA < 2:445751/143‑1 TCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAG < 1:262891/143‑1 GTCGGCCGGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCG < 1:484157/143‑1 TCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAGCTGTTCGCGGGAATATTTACGCGCGCGATAGCGCAGCGCAAAGCGG > 2:222484/1‑143 AGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTC < 2:254564/143‑1 CCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGGGCGATGTTGAGCTGAGGCGGGATCAGGCTGGTACGCTGACCGGCATGCGGAAGTGTTCGCTGAAATAATAACGCGCGCGCGAACACAGAGCAAAACGGTACA > 1:541009/1‑143 CCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATCACGCAGCGCAAAGCGGTCCA > 2:745839/1‑143 cagcgCGCGCGGCGCGTGGCGGCGACCAACATGATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGATCGGCATACGTAACTGTTCGCTGGAATATTTACGCGCGCATGAACGTGGCTCAAAGCGGTCCATACG < 1:618684/138‑1 CAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACG < 1:489515/143‑1 gggtGCGGGGCGCTGGGCGGCGGCCAACATCATGAGCGATGTTGAGGTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGT < 1:384725/139‑1 GGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGT < 2:567479/143‑1 CGGCGCGGGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGAGCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTG < 1:281763/143‑1 GCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCCATCTGCC > 2:270582/1‑143 CGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGG < 2:503015/143‑1 gGGCGGCGACCAGCATCATGAGCGATGTTGGGCTGAGGCGGGATCAGGCGGGTGCGCGGACCGGCATACGGAACTGTTCGCTGGGATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCA < 1:489104/142‑1 ggcgggcagcgACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAA < 1:868694/132‑1 GCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGGACGGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGCCAAGCTGCCCGGCAAA > 1:561167/1‑143 CGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGAGAACGCAGCGCAAAGCGGGCCATACGGGCAATCTGCCCGGCAAcc > 1:416309/1‑141 ACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACG < 2:892336/143‑1 ggagcgagcgTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATCTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGT < 1:834692/133‑1 AGCGATGTGGAGCTGATGCGTGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGAAATAACTCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTT < 2:277300/143‑1 GCGATGGTGAGCGGAAGCGGGAGCAGGCGGGTACGCGGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTG < 2:263007/143‑1 CGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCGATCTGCCCGGCAAACAGACGGTCCGGCGGTTTGC > 2:661152/1‑143 TGTGGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATCCGGAGCTGTGCGCTGGAATATTTCCGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGA < 2:463304/143‑1 GTTGAGCTGAGGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAA < 1:271533/143‑1 gGAGCTGATGCGGGAGCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTGACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACA < 1:97338/142‑1 CTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCGATCTGCCCGGCAAACAGACGGTCCTTCGGTTTGCTGAACACCAG > 2:84838/1‑143 GATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTT > 2:432291/1‑143 GCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGC > 1:994718/1‑143 GATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATC > 1:149782/1‑143 GATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCACAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCGATC > 2:731226/1‑143 TCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAA < 2:588650/143‑1 CAGGCGGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAG < 1:7912/143‑1 AGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCCATTTGCTGCACACCAGCTCGCTATCAAGG > 1:347575/1‑143 GGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCGATACGGTCCATCTGCCCGGCAAACAGACGGTACTGCGGTTTGCTGGACACAAGGTTGCTTACAAGGA > 1:279869/1‑143 GGCTGGCACGCTGAGCGGCAGACGGCACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCGGGCAAACAGACGGTCCTGCGGTTTGCTGAATACCAGTTTGCTATCAAGGA < 1:831763/143‑1 GCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTCCGTATCAAGGAA > 1:543467/1‑143 GTACGCTGACCGGCATACGTAACTGTTCGCTGAAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACT < 2:277529/143‑1 ACGCTGACCGGCCTACGGAACTGTTCGTTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTC < 1:728559/143‑1 TGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGC > 2:806935/1‑143 CCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGG < 1:665621/143‑1 CGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCCGCGCACAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCAGCGGTTTGCTGCACACCCGTTTGGTATCAAGGCAACGTTCACGCAGGG > 1:663229/1‑143 GTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/62682‑62821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG > NC_000913/62838‑62978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |