Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 62,822 Δ16 bp coding (428‑443/2907 nt) rapA ← RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 62822 62837 16 57 [0] [0] 57 rapA RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 628210 (0.000)55 (0.950) 48/280 0.1 100% coding (444/2907 nt) rapA RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase
?NC_000913 62838 = 0 (0.000)coding (427/2907 nt) rapA RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase

CATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG  >  NC_000913/62698‑62978
                                                                                                                                            |                                                                                                                                            
gttgctgatgcaggatcatcccggcttcaatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgctgttgagctgatgcgggatcaggctggtacgctgaccgggc                                                                                                                                            >  1:277529‑M2/141‑141 (MQ=255)
       atgcaggatcacccgggcttccatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGaa                                                                                                                                     <  2:199480‑M2/10‑1 (MQ=255)
                cagcccggcttcgatggttttccctaaacccacgtcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcgtgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCt                                                                                                                            <  2:79866‑M2/19‑1 (MQ=255)
                           cgatgttgttccctagatccacttcgtctgccagcaggatgcgcggcgcgtggcggcgaccaacatcagtgtcgatggtgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTAc                                                                                                                 <  1:271542‑M2/30‑1 (MQ=255)
                           caatggtggtcccgaagccgcctgcgtccgccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTGAc                                                                                                                 <  1:412550‑M2/30‑1 (MQ=255)
                             atggttttccctaaacccacttcgtcagccagcaggacccgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcaggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTAcgc                                                                                                               >  2:398072‑M2/112‑143 (MQ=255)
                               ggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaacgGACCACGGAACTGTTAGACGCTATATTTAcgcgc                                                                                                             >  1:873818‑M2/110‑143 (MQ=255)
                                     ccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATa                                                                                                       <  2:947928‑M2/40‑1 (MQ=255)
                                       ctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATGAc                                                                                                     >  1:931091‑M2/102‑143 (MQ=255)
                                        taaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCCCGATAACg                                                                                                    >  2:767299‑M2/101‑143 (MQ=255)
                                          aacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCa                                                                                                  <  2:544547‑M2/45‑1 (MQ=255)
                                            cccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgtgggggcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTCCGAGCGCGATAACGCAgc                                                                                                >  2:609450‑M2/97‑143 (MQ=255)
                                            cccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAgc                                                                                                <  2:919984‑M2/47‑1 (MQ=255)
                                               acttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCa                                                                                             <  1:398303‑M2/50‑1 (MQ=255)
                                                 ttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCaaa                                                                                           <  2:445751‑M2/52‑1 (MQ=255)
                                                  tcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAg                                                                                          <  1:262891‑M2/53‑1 (MQ=255)
                                                    gtcggccggcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCg                                                                                        <  1:484157‑M2/55‑1 (MQ=255)
                                                     tcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAGCTGTTCGCGGGAATATTTACGCGCGCGATAGCGCAGCGCAAAGCgg                                                                                       >  2:222484‑M2/88‑143 (MQ=255)
                                                       agccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTc                                                                                     <  2:254564‑M2/58‑1 (MQ=255)
                                                         ccagcaggacgcgcggcgcgtggcggcgaccaacatcatgggcgatgttgagctgaggcgggatcaggctggtacgctgaccgGCATGCGGAAGTGTTCGCTGAAATAATAACGCGCGCGCGAACACAGAGCAAAACGGTACa                                                                                   >  1:541009‑M2/84‑143 (MQ=255)
                                                         ccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATCACGCAGCGCAAAGCGGTCCa                                                                                   >  2:745839‑M2/84‑143 (MQ=255)
                                                             caggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACg                                                                               <  1:489515‑M2/64‑1 (MQ=255)
                                                             cagcgcgcgcggcgcgtggcggcgaccaacatgatgagcgatgttgagctgatgcgggatcaggctggtacgctgatcgGCATACGTAACTGTTCGCTGGAATATTTACGCGCGCATGAACGTGGCTCAAAGCGGTCCATACg                                                                               <  1:618684‑M2/64‑1 (MQ=255)
                                                               gggtgcggggcgctgggcggcggccaacatcatgagcgatgttgaggtgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGt                                                                             <  1:384725‑M2/66‑1 (MQ=255)
                                                               ggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGt                                                                             <  2:567479‑M2/66‑1 (MQ=255)
                                                                      cggcgcggggcggcgaccaacatcatgagcgatgttgagctgatgcgggagcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTg                                                                      <  1:281763‑M2/73‑1 (MQ=255)
                                                                        gcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCCATCTGcc                                                                    >  2:270582‑M2/69‑143 (MQ=255)
                                                                           cgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCgg                                                                 <  2:503015‑M2/78‑1 (MQ=255)
                                                                             gggcggcgaccagcatcatgagcgatgttgggctgaggcgggatcaggcgggtgcgcggaccgGCATACGGAACTGTTCGCTGGGATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCa                                                               <  1:489104‑M2/80‑1 (MQ=255)
                                                                              ggcgggcagcgacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCaa                                                              <  1:868694‑M2/81‑1 (MQ=255)
                                                                               gcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGGACGGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGCCAAGCTGCCCGGCaaa                                                             >  1:561167‑M2/62‑143 (MQ=255)
                                                                                cggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGAGAACGCAGCGCAAAGCGGGCCATACGGGCAATCTGCCCGgcaacc                                                            >  1:416309‑M2/61‑141 (MQ=255)
                                                                                     accaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACg                                                       <  2:892336‑M2/88‑1 (MQ=255)
                                                                                               ggagcgagcgtgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATCTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGt                                             <  1:834692‑M2/98‑1 (MQ=255)
                                                                                                 agcgatgtggagctgatgcgtgatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGAAATAACTCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGttt                                           <  2:277300‑M2/100‑1 (MQ=255)
                                                                                                  gcgatggtgagcggaagcgggagcaggcgggtacgcggaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTg                                          <  2:263007‑M2/101‑1 (MQ=255)
                                                                                                   cgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCGATCTGCCCGGCAAACAGACGGTCCGGCGGTTTGc                                         >  2:661152‑M2/42‑143 (MQ=255)
                                                                                                      tgtggagctgatgcgggatcaggctggtacgctgaccgGCATCCGGAGCTGTGCGCTGGAATATTTCCGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGa                                      <  2:463304‑M2/105‑1 (MQ=255)
                                                                                                       gttgagctgaggcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGaa                                     <  1:271533‑M2/106‑1 (MQ=255)
                                                                                                         ggagctgatgcgggagcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTGACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAaca                                   <  1:97338‑M2/108‑1 (MQ=255)
                                                                                                             ctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCGATCTGCCCGGCAAACAGACGGTCCTTCGGTTTGCTGAACACCAg                               >  2:84838‑M2/32‑143 (MQ=255)
                                                                                                               gatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGtt                             >  2:432291‑M2/30‑143 (MQ=255)
                                                                                                                  gcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGc                          >  1:994718‑M2/27‑143 (MQ=255)
                                                                                                                      gatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATc                      >  1:149782‑M2/23‑143 (MQ=255)
                                                                                                                      gatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCACAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCGATc                      >  2:731226‑M2/23‑143 (MQ=255)
                                                                                                                        tcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCaa                    <  2:588650‑M2/123‑1 (MQ=255)
                                                                                                                         caggcgggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAg                   <  1:7912‑M2/124‑1 (MQ=255)
                                                                                                                          aggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCCATTTGCTGCACACCAGCTCGCTATCAAgg                  >  1:347575‑M2/19‑143 (MQ=255)
                                                                                                                           ggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCGATACGGTCCATCTGCCCGGCAAACAGACGGTACTGCGGTTTGCTGGACACAAGGTTGCTTACAAGGa                 >  1:279869‑M2/18‑143 (MQ=255)
                                                                                                                           ggctggcacgctgagcgGCAGACGGCACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCGGGCAAACAGACGGTCCTGCGGTTTGCTGAATACCAGTTTGCTATCAAGGa                 <  1:831763‑M2/126‑1 (MQ=255)
                                                                                                                            gctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTCCGTATCAAGGaa                >  1:543467‑M2/17‑143 (MQ=255)
                                                                                                                                gtacgctgaccgGCATACGTAACTGTTCGCTGAAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACt            <  2:277529‑M2/131‑1 (MQ=255)
                                                                                                                                  acgctgaccgGCCTACGGAACTGTTCGTTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTc          <  1:728559‑M2/133‑1 (MQ=255)
                                                                                                                                      tgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGc      >  2:806935‑M2/7‑143 (MQ=255)
                                                                                                                                         ccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAgg   <  1:665621‑M2/140‑1 (MQ=255)
                                                                                                                                         cccgCACACGTAACTGTTCGCTGGCCCATCTCCGCGCGCGATCAAGCACCACAAAGCGGACCATAAGGACAATCCGACCGGCAAACAGACCGTCCCGAGATTAACCGAAGAACAGCCTGCTATCAAGGAAAACTTCACGCAgg   <  1:942099/140‑1 (MQ=255)
                                                                                                                                          cgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCCGCGCACAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCAGCGGTTTGCTGCACACCCGTTTGGTATCAAGGCAACGTTCACGCAggg  >  1:663229‑M2/3‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG  >  NC_000913/62698‑62978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.