| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 62,822 | Δ16 bp | coding (428‑443/2907 nt) | rapA ← | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 62822 | 62837 | 16 | 57 [0] | [0] 57 | rapA | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 62821 | 0 (0.000) | 55 (0.950) | 48/280 | 0.1 | 100% | coding (444/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase |
| ? | NC_000913 | 62838 = | 0 (0.000) | coding (427/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase | |||||
CATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG > NC_000913/62698‑62978 | gttgctgatgcaggatcatcccggcttcaatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgctgttgagctgatgcgggatcaggctggtacgctgaccgggc > 1:277529‑M2/141‑141 (MQ=255) atgcaggatcacccgggcttccatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGaa < 2:199480‑M2/10‑1 (MQ=255) cagcccggcttcgatggttttccctaaacccacgtcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcgtgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCt < 2:79866‑M2/19‑1 (MQ=255) cgatgttgttccctagatccacttcgtctgccagcaggatgcgcggcgcgtggcggcgaccaacatcagtgtcgatggtgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTAc < 1:271542‑M2/30‑1 (MQ=255) caatggtggtcccgaagccgcctgcgtccgccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTGAc < 1:412550‑M2/30‑1 (MQ=255) atggttttccctaaacccacttcgtcagccagcaggacccgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcaggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTAcgc > 2:398072‑M2/112‑143 (MQ=255) ggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaacgGACCACGGAACTGTTAGACGCTATATTTAcgcgc > 1:873818‑M2/110‑143 (MQ=255) ccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATa < 2:947928‑M2/40‑1 (MQ=255) ctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATGAc > 1:931091‑M2/102‑143 (MQ=255) taaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCCCGATAACg > 2:767299‑M2/101‑143 (MQ=255) aacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCa < 2:544547‑M2/45‑1 (MQ=255) cccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgtgggggcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTCCGAGCGCGATAACGCAgc > 2:609450‑M2/97‑143 (MQ=255) cccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAgc < 2:919984‑M2/47‑1 (MQ=255) acttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCa < 1:398303‑M2/50‑1 (MQ=255) ttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCaaa < 2:445751‑M2/52‑1 (MQ=255) tcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAg < 1:262891‑M2/53‑1 (MQ=255) gtcggccggcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCg < 1:484157‑M2/55‑1 (MQ=255) tcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAGCTGTTCGCGGGAATATTTACGCGCGCGATAGCGCAGCGCAAAGCgg > 2:222484‑M2/88‑143 (MQ=255) agccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTc < 2:254564‑M2/58‑1 (MQ=255) ccagcaggacgcgcggcgcgtggcggcgaccaacatcatgggcgatgttgagctgaggcgggatcaggctggtacgctgaccgGCATGCGGAAGTGTTCGCTGAAATAATAACGCGCGCGCGAACACAGAGCAAAACGGTACa > 1:541009‑M2/84‑143 (MQ=255) ccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATCACGCAGCGCAAAGCGGTCCa > 2:745839‑M2/84‑143 (MQ=255) caggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACg < 1:489515‑M2/64‑1 (MQ=255) cagcgcgcgcggcgcgtggcggcgaccaacatgatgagcgatgttgagctgatgcgggatcaggctggtacgctgatcgGCATACGTAACTGTTCGCTGGAATATTTACGCGCGCATGAACGTGGCTCAAAGCGGTCCATACg < 1:618684‑M2/64‑1 (MQ=255) gggtgcggggcgctgggcggcggccaacatcatgagcgatgttgaggtgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGt < 1:384725‑M2/66‑1 (MQ=255) ggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGt < 2:567479‑M2/66‑1 (MQ=255) cggcgcggggcggcgaccaacatcatgagcgatgttgagctgatgcgggagcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTg < 1:281763‑M2/73‑1 (MQ=255) gcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCCATCTGcc > 2:270582‑M2/69‑143 (MQ=255) cgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCgg < 2:503015‑M2/78‑1 (MQ=255) gggcggcgaccagcatcatgagcgatgttgggctgaggcgggatcaggcgggtgcgcggaccgGCATACGGAACTGTTCGCTGGGATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCa < 1:489104‑M2/80‑1 (MQ=255) ggcgggcagcgacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCaa < 1:868694‑M2/81‑1 (MQ=255) gcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGGACGGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGCCAAGCTGCCCGGCaaa > 1:561167‑M2/62‑143 (MQ=255) cggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGAGAACGCAGCGCAAAGCGGGCCATACGGGCAATCTGCCCGgcaacc > 1:416309‑M2/61‑141 (MQ=255) accaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACg < 2:892336‑M2/88‑1 (MQ=255) ggagcgagcgtgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATCTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGt < 1:834692‑M2/98‑1 (MQ=255) agcgatgtggagctgatgcgtgatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGAAATAACTCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGttt < 2:277300‑M2/100‑1 (MQ=255) gcgatggtgagcggaagcgggagcaggcgggtacgcggaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTg < 2:263007‑M2/101‑1 (MQ=255) cgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCGATCTGCCCGGCAAACAGACGGTCCGGCGGTTTGc > 2:661152‑M2/42‑143 (MQ=255) tgtggagctgatgcgggatcaggctggtacgctgaccgGCATCCGGAGCTGTGCGCTGGAATATTTCCGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGa < 2:463304‑M2/105‑1 (MQ=255) gttgagctgaggcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGaa < 1:271533‑M2/106‑1 (MQ=255) ggagctgatgcgggagcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTGACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAaca < 1:97338‑M2/108‑1 (MQ=255) ctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCGATCTGCCCGGCAAACAGACGGTCCTTCGGTTTGCTGAACACCAg > 2:84838‑M2/32‑143 (MQ=255) gatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGtt > 2:432291‑M2/30‑143 (MQ=255) gcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGc > 1:994718‑M2/27‑143 (MQ=255) gatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATc > 1:149782‑M2/23‑143 (MQ=255) gatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCACAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCGATc > 2:731226‑M2/23‑143 (MQ=255) tcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCaa < 2:588650‑M2/123‑1 (MQ=255) caggcgggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAg < 1:7912‑M2/124‑1 (MQ=255) aggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCCATTTGCTGCACACCAGCTCGCTATCAAgg > 1:347575‑M2/19‑143 (MQ=255) ggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCGATACGGTCCATCTGCCCGGCAAACAGACGGTACTGCGGTTTGCTGGACACAAGGTTGCTTACAAGGa > 1:279869‑M2/18‑143 (MQ=255) ggctggcacgctgagcgGCAGACGGCACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCGGGCAAACAGACGGTCCTGCGGTTTGCTGAATACCAGTTTGCTATCAAGGa < 1:831763‑M2/126‑1 (MQ=255) gctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTCCGTATCAAGGaa > 1:543467‑M2/17‑143 (MQ=255) gtacgctgaccgGCATACGTAACTGTTCGCTGAAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACt < 2:277529‑M2/131‑1 (MQ=255) acgctgaccgGCCTACGGAACTGTTCGTTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTc < 1:728559‑M2/133‑1 (MQ=255) tgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGc > 2:806935‑M2/7‑143 (MQ=255) ccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAgg < 1:665621‑M2/140‑1 (MQ=255) cccgCACACGTAACTGTTCGCTGGCCCATCTCCGCGCGCGATCAAGCACCACAAAGCGGACCATAAGGACAATCCGACCGGCAAACAGACCGTCCCGAGATTAACCGAAGAACAGCCTGCTATCAAGGAAAACTTCACGCAgg < 1:942099/140‑1 (MQ=255) cgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCCGCGCACAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCAGCGGTTTGCTGCACACCCGTTTGGTATCAAGGCAACGTTCACGCAggg > 1:663229‑M2/3‑143 (MQ=255) | CATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG > NC_000913/62698‑62978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |