Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 62,822 Δ16 bp coding (428‑443/2907 nt) rapA ← RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 62822 62837 16 57 [0] [0] 57 rapA RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 628210 (0.000)55 (0.950) 48/280 0.1 100% coding (444/2907 nt) rapA RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase
?NC_000913 62838 = 0 (0.000)coding (427/2907 nt) rapA RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase

GTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGG  >  NC_000913/62682‑62962
                                                                                                                                           |                                                                                                                                             
gTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGCTGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGggc                                                                                                                                            >  1:277529‑M1/1‑140 (MQ=255)
     tGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGCTCAGGCTGGCACACTGACcggaatccgc                                                                                                                                       >  1:906360/1‑135 (MQ=255)
       aTGCAGGATCACCCGGGCTTCCATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaa                                                                                                                                     <  2:199480‑M1/143‑11 (MQ=255)
                cagcccggcTTCGATGGTTTTCCCTAAACCCACGTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCGTGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgct                                                                                                                            <  2:79866‑M1/140‑20 (MQ=255)
                           cgatgttgttccctagatCCACTTCGTCTGCCAGCAGGATGCGCGGCGCGTGGCGGCGACCAACATCAGTGTCGATGGTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttac                                                                                                                 <  1:271542‑M1/135‑31 (MQ=255)
                           cAATGGTGGTCCCGAAGCCGCCTGCGTCCGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatattgac                                                                                                                 <  1:412550‑M1/143‑31 (MQ=255)
                             aTGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACCCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCAGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgc                                                                                                               >  2:398072‑M1/1‑111 (MQ=255)
                               ggTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGAACGgaccacggaactgttagacgctatatttacgcgc                                                                                                             >  1:873818‑M1/1‑109 (MQ=255)
                                     cccTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgata                                                                                                       <  2:947928‑M1/143‑41 (MQ=255)
                                       cTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgatgac                                                                                                     >  1:931091‑M1/1‑101 (MQ=255)
                                        tAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcccgataacg                                                                                                    >  2:767299‑M1/1‑100 (MQ=255)
                                          aaCCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgca                                                                                                  <  2:544547‑M1/143‑46 (MQ=255)
                                            cccACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGTGGGGGCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttccgagcgcgataacgcagc                                                                                                >  2:609450‑M1/1‑96 (MQ=255)
                                            cccACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagc                                                                                                <  2:919984‑M1/143‑48 (MQ=255)
                                               aCTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgca                                                                                             <  1:398303‑M1/143‑51 (MQ=255)
                                                 ttCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaa                                                                                           <  2:445751‑M1/143‑53 (MQ=255)
                                                  tCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaag                                                                                          <  1:262891‑M1/143‑54 (MQ=255)
                                                    gTCGGCCGGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcg                                                                                        <  1:484157‑M1/143‑56 (MQ=255)
                                                     tCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggagctgttcgcgggaatatttacgcgcgcgatagcgcagcgcaaagcgg                                                                                       >  2:222484‑M1/1‑87 (MQ=255)
                                                       agccagcAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtc                                                                                     <  2:254564‑M1/143‑59 (MQ=255)
                                                         ccagcAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGGGCGATGTTGAGCTGAGGCGGGATCAGGCTGGTACGCTGACCGgcatgcggaagtgttcgctgaaataataacgcgcgcgcgaacacagagcaaaacggtaca                                                                                   >  1:541009‑M1/1‑83 (MQ=255)
                                                         ccagcAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgatcacgcagcgcaaagcggtcca                                                                                   >  2:745839‑M1/1‑83 (MQ=255)
                                                             cagcgcgcgcggcgcgTGGCGGCGACCAACATGATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGATCGgcatacgtaactgttcgctggaatatttacgcgcgcatgaacgtggctcaaagcggtccatacg                                                                               <  1:618684‑M1/138‑65 (MQ=255)
                                                             cagGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacg                                                                               <  1:489515‑M1/143‑65 (MQ=255)
                                                               gggtgcggggcgctgggcGGCGGCCAACATCATGAGCGATGTTGAGGTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggt                                                                             <  1:384725‑M1/139‑67 (MQ=255)
                                                               ggACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggt                                                                             <  2:567479‑M1/143‑67 (MQ=255)
                                                                      cggcgcgGGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGAGCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctg                                                                      <  1:281763‑M1/143‑74 (MQ=255)
                                                                        gcgcgTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtccatctgcc                                                                    >  2:270582‑M1/1‑68 (MQ=255)
                                                                           cgTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccgg                                                                 <  2:503015‑M1/143‑79 (MQ=255)
                                                                             gggcggcgACCAGCATCATGAGCGATGTTGGGCTGAGGCGGGATCAGGCGGGTGCGCGGACCGgcatacggaactgttcgctgggatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggca                                                               <  1:489104‑M1/142‑81 (MQ=255)
                                                                              ggcgggcagcgacatcatgagcgATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaa                                                              <  1:868694‑M1/132‑82 (MQ=255)
                                                                               gcggcgACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacgggacggttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggccaagctgcccggcaaa                                                             >  1:561167‑M1/1‑61 (MQ=255)
                                                                                cggcgACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgagaacgcagcgcaaagcgggccatacgggcaatctgcccggcaacc                                                            >  1:416309‑M1/1‑60 (MQ=255)
                                                                                     aCCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacg                                                       <  2:892336‑M1/143‑89 (MQ=255)
                                                                                               ggagcgagcgtgagctgatgcGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatctacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggt                                             <  1:834692‑M1/133‑99 (MQ=255)
                                                                                                 aGCGATGTGGAGCTGATGCGTGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgaaataactcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggttt                                           <  2:277300‑M1/143‑101 (MQ=255)
                                                                                                  gCGATGGTGAGCGGAAGCGGGAGCAGGCGGGTACGCGGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttg                                          <  2:263007‑M1/143‑102 (MQ=255)
                                                                                                   cGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcgatctgcccggcaaacagacggtccggcggtttgc                                         >  2:661152‑M1/1‑41 (MQ=255)
                                                                                                      tgtgGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatccggagctgtgcgctggaatatttccgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctga                                      <  2:463304‑M1/143‑106 (MQ=255)
                                                                                                       gTTGAGCTGAGGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaa                                     <  1:271533‑M1/143‑107 (MQ=255)
                                                                                                         ggaGCTGATGCGGGAGCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatattgacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaaca                                   <  1:97338‑M1/142‑109 (MQ=255)
                                                                                                             cTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcgatctgcccggcaaacagacggtccttcggtttgctgaacaccag                               >  2:84838‑M1/1‑31 (MQ=255)
                                                                                                               gATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtt                             >  2:432291‑M1/1‑29 (MQ=255)
                                                                                                                  gCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgc                          >  1:994718‑M1/1‑26 (MQ=255)
                                                                                                                      gATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatc                      >  1:149782‑M1/1‑22 (MQ=255)
                                                                                                                      gATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcacaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgcgatc                      >  2:731226‑M1/1‑22 (MQ=255)
                                                                                                                        tCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaa                    <  2:588650‑M1/143‑124 (MQ=255)
                                                                                                                         cAGGCGGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaag                   <  1:7912‑M1/143‑125 (MQ=255)
                                                                                                                          aGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgccatttgctgcacaccagctcgctatcaagg                  >  1:347575‑M1/1‑18 (MQ=255)
                                                                                                                           ggCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtcgatacggtccatctgcccggcaaacagacggtactgcggtttgctggacacaaggttgcttacaagga                 >  1:279869‑M1/1‑17 (MQ=255)
                                                                                                                           ggCTGGCACGCTGAGCGgcagacggcactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgccgggcaaacagacggtcctgcggtttgctgaataccagtttgctatcaagga                 <  1:831763‑M1/143‑127 (MQ=255)
                                                                                                                            gCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagttccgtatcaaggaa                >  1:543467‑M1/1‑16 (MQ=255)
                                                                                                                                gTACGCTGACCGgcatacgtaactgttcgctgaaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaaggaaaact            <  2:277529‑M1/143‑132 (MQ=255)
                                                                                                                                  aCGCTGACCGgcctacggaactgttcgttggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaaggaaaacttc          <  1:728559‑M1/143‑134 (MQ=255)
                                                                                                                                      tGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaaggaaaacttcacgc      >  2:806935‑M1/1‑6 (MQ=255)
                                                                                                                                         ccGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaaggaaaacttcacgcagg   <  1:665621‑M1/143‑141 (MQ=255)
                                                                                                                                          cGgcatacggaactgttcgctggaatatttacgcgcgcgataacgccgcgcacagcggtccatacggtcaatctgcccggcaaacagacggtccagcggtttgctgcacacccgtttggtatcaaggcaacgttcacgcaggg  >  1:663229‑M1/1‑2 (MQ=255)
                                                                                                                                           |                                                                                                                                             
GTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGG  >  NC_000913/62682‑62962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.