mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4430455 | 197 (1.210) | 4 (0.030) | 4/490 | NT | 2.0% | coding (591/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | NC_000913 | = 4430466 | 195 (1.240) | coding (602/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | NC_000913 | = 4273475 | 177 (1.090) | 3 (0.020) | 3/498 | NT | 1.6% | coding (396/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913 | = 4273489 | 186 (1.160) | coding (382/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| * | ? | NC_000913 | = 3154351 | 159 (0.980) | 4 (0.030) | 4/488 | NT | 2.5% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | NC_000913 | = 3154364 | 159 (1.020) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
| * | ? | NC_000913 | 2706124 = | 172 (1.060) | 3 (0.020) | 3/490 | NT | 1.8% | coding (999/1800 nt) | lepA | back‑translocating elongation factor EF4, GTPase |
| ? | NC_000913 | 2706188 = | 166 (1.060) | coding (935/1800 nt) | lepA | back‑translocating elongation factor EF4, GTPase | |||||
| * | ? | NC_000913 | = 2537073 | 170 (1.050) | 3 (0.020) | 3/490 | NT | 1.8% | coding (163/852 nt) | pdxK | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| ? | NC_000913 | = 2537074 | 168 (1.070) | coding (162/852 nt) | pdxK | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase | |||||
| * | ? | NC_000913 | = 1497317 | 172 (1.060) | 3 (0.020) | 3/490 | NT | 1.8% | coding (462/1656 nt) | opgD | OPG biosynthetic periplasmic protein |
| ? | NC_000913 | = 1497324 | 167 (1.060) | coding (469/1656 nt) | opgD | OPG biosynthetic periplasmic protein | |||||
| * | ? | NC_000913 | = 1192080 | 140 (0.860) | 3 (0.020) | 3/490 | NT | 2.2% | coding (552/642 nt) | hflD | putative lysogenization regulator |
| ? | NC_000913 | = 1192096 | 137 (0.870) | coding (536/642 nt) | hflD | putative lysogenization regulator | |||||
| * | ? | NC_000913 | 582112 = | 204 (1.260) | 3 (0.020) | 3/490 | NT | 1.5% | intergenic (+15/+40) | tfaD/ybcY | pseudogene, DLP12 prophage, tail fiber assembly protein family,Phage or Prophage Related/pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| ? | NC_000913 | 582145 = | 187 (1.190) | intergenic (+48/+7) | tfaD/ybcY | pseudogene, DLP12 prophage, tail fiber assembly protein family,Phage or Prophage Related/pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related | |||||