mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,348,021 | 0 | G | A | 56.1% | 13.9 / 40.6 | 41 | A20T (GCA→ACA) | npr | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr) |
| * | NC_000913 | 67,887 | 2 | . | T | 38.1% | 23.2 / 69.1 | 42 | coding (451/1503 nt) | araA | L‑arabinose isomerase |
| * | NC_000913 | 67,887 | 1 | . | G | 36.6% | 27.9 / 68.2 | 42 | coding (451/1503 nt) | araA | L‑arabinose isomerase |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1097282 | 10 (0.220) | 8 (0.180) | 6/268 | 5.0 | 43.9% | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097286 | 11 (0.250) | intergenic (+457/+279) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097105 | NA (NA) | 7 (0.160) | 6/268 | 5.0 | 42.6% | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097282 | 10 (0.220) | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 7 (0.150) | 6/280 | 5.3 | 12.0% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040682 | 52 (1.120) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | = 1097463 | 9 (0.190) | 8 (0.180) | 5/268 | 5.5 | 48.5% | intergenic (+634/+102) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097467 | NA (NA) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097294 | 16 (0.350) | 7 (0.160) | 5/268 | 5.5 | 39.9% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097455 | 6 (0.140) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097101 | 34 (0.730) | 8 (0.180) | 5/268 | 5.5 | 27.1% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097286 | 11 (0.250) | intergenic (+457/+279) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097101 | 34 (0.730) | 8 (0.180) | 5/268 | 5.5 | 20.0% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097105 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 3946823 | 6 (0.130) | 7 (0.150) | 5/280 | 5.8 | 19.5% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040680 | 52 (1.140) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 4542683 = | 38 (0.820) | 4 (0.090) | 4/266 | 6.0 | 8.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542997 = | 52 (1.200) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1826807 | 49 (1.060) | 4 (0.090) | 4/272 | 6.1 | 7.9% | coding (117/969 nt) | astE | succinylglutamate desuccinylase |
| ? | NC_000913 | = 1826851 | 46 (1.040) | coding (73/969 nt) | astE | succinylglutamate desuccinylase | |||||