Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,720,634 Δ1,442 bp IS150‑mediated insJ–insK insJ, insK

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3720634 3722075 1442 107 [0] [0] 101 insJ–insK insJ,insK

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 37206330 (0.000)101 (1.400) 40/68 0.0 100% noncoding (1/1443 nt) IS150 repeat region
?NC_000913 3722076 = 0 (0.000)intergenic (+27/+252) insK/glyS IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

Only 100 of 107 total aligned reads displayed.

ATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  NC_000913/3720599‑3720667
                                  |                                  
aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                    >  1:3542725/1‑35 (MQ=255)
aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                    <  1:6973225/35‑1 (MQ=255)
aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                    <  1:1226725/35‑1 (MQ=255)
aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                    <  1:2673622/35‑1 (MQ=255)
aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                    <  1:2043053/35‑1 (MQ=255)
aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                    <  1:6268415/35‑1 (MQ=255)
 ttCCCCGCCTCCTGTGTTGATTTCCAACGAGTATa                                   >  1:1454021‑M1/1‑34 (MQ=255)
 ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                   <  1:1086815‑M1/35‑2 (MQ=255)
 ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                   <  1:68042‑M1/35‑2 (MQ=255)
 ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                   >  1:2315331‑M1/1‑34 (MQ=255)
 ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                   >  1:6492388‑M1/1‑34 (MQ=255)
  tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                  <  1:6089973‑M1/35‑3 (MQ=255)
  tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                  <  1:4844713‑M1/35‑3 (MQ=255)
  tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                  <  1:5161525‑M1/35‑3 (MQ=255)
   cccAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                 >  1:1955185‑M1/1‑32 (MQ=255)
   cccAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                 <  1:4163094‑M1/35‑4 (MQ=255)
   cccAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                 >  1:1986950‑M1/1‑32 (MQ=255)
   cccAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                 <  1:483656‑M1/35‑4 (MQ=255)
   cccAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                 >  1:665038‑M1/1‑32 (MQ=255)
    ccAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                >  1:13372‑M1/1‑31 (MQ=255)
     cAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                               <  1:7466642‑M1/35‑6 (MQ=255)
     cAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                               <  1:4642287‑M1/35‑6 (MQ=255)
      aGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                              <  1:1629354‑M1/35‑7 (MQ=255)
      aGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                              >  1:2798842‑M1/1‑29 (MQ=255)
       gCCTCCTGTGTTGATTTCCAACGAGTATaactttg                             <  1:89965‑M1/35‑8 (MQ=255)
         ctcctGTGTTGATTTCCAACGAGTATaactttgat                           <  1:7403102‑M1/35‑10 (MQ=255)
          tcctGTGTTGATTTCCAACGAGTATaactttgatt                          >  1:1783786‑M1/1‑25 (MQ=255)
          tcctGTGTTGATTTCCAACGAGTATaactttgatt                          <  1:94625‑M1/35‑11 (MQ=255)
          tcctGTGTTGATTTCCAACGAGTATaactttgatt                          <  1:461387‑M1/35‑11 (MQ=255)
          tcctGTGTTGATTTCCAACGAGTATaactttgatt                          >  1:6766802‑M1/1‑25 (MQ=255)
          tcctGTGTTGATTTCCAACGAGTATaactttgatt                          <  1:5997961‑M1/35‑11 (MQ=255)
           cctGTGTTGATTTCCAACGAGTATaactttgattt                         <  1:2220263‑M1/35‑12 (MQ=255)
           cctGTGTTGATTTCCAACGAGTATaactttgattt                         <  1:526757‑M1/35‑12 (MQ=255)
           cctGTGTTGATTTCCAACGAGTATaactttgattt                         <  1:5383226‑M1/35‑12 (MQ=255)
           cctGTGTTGATTTCCAACGAGTATaactttgattt                         <  1:1846729‑M1/35‑12 (MQ=255)
            ctGTGTTGATTTCCAACGAGTATaactttgattta                        <  1:5120050‑M1/35‑13 (MQ=255)
            ctGTGTTGATTTCCAACGAGTATaactttgattta                        <  1:6648230‑M1/35‑13 (MQ=255)
            ctGTGTTGATTTCCAACGAGTATaactttgattta                        <  1:7503629‑M1/35‑13 (MQ=255)
            ctGTGTTGATTTCCAACGAGTATaactttgattta                        <  1:7189511‑M1/35‑13 (MQ=255)
            ctGTGTTGATTTCCAACGAGTATaactttgattta                        <  1:4132153‑M1/35‑13 (MQ=255)
            ctGTGTTGATTTCCAACGAGTATaactttgattta                        <  1:2288419‑M1/35‑13 (MQ=255)
             tgtgTTGATTTCCAACGAGTGTaactttgatttat                       <  1:2031410‑M1/35‑14 (MQ=255)
             tgtgTTGATTTCCAACGAGTATaactttgatttat                       <  1:1943036‑M1/35‑14 (MQ=255)
             tgtgTTGATTTCCAACGAGTATaactttgatttat                       <  1:1942992‑M1/35‑14 (MQ=255)
             tgtgTTGATTTCCAACGAGTATaactttgatttat                       <  1:4813820‑M1/35‑14 (MQ=255)
             tgtgTTGATTTCCAACGAGTATaactttgatttat                       <  1:1519044‑M1/35‑14 (MQ=255)
              gtgtTGATTTCCAACGAGTATaactttgatttata                      <  1:3472510‑M1/35‑15 (MQ=255)
              gtgtTGATTTCCAACGAGTATaactttgatttata                      <  1:701301‑M1/35‑15 (MQ=255)
              gtgtTGATTTCCAACGAGTATaactttgatttata                      <  1:2804961‑M1/35‑15 (MQ=255)
              gtgtTGATTTCCAACGAGTATaactttgatttata                      <  1:1252242‑M1/35‑15 (MQ=255)
              gtgtTGATTTCCAACGAGTATaactttgatttata                      <  1:3325139‑M1/35‑15 (MQ=255)
               tgtTGATTTCCAACGAGTATaactttgatttatag                     >  1:5453091‑M1/1‑20 (MQ=255)
               tgtTGATTTCCAACGAGTATaactttgatttatag                     >  1:123783‑M1/1‑20 (MQ=255)
               tgtTGATTTCCAACGAGTATaactttgatttatag                     <  1:4634182‑M1/35‑16 (MQ=255)
               tgtTGATTTCCAACGAGTATaactttgatttatag                     <  1:1268314‑M1/35‑16 (MQ=255)
                gtTGATTTCCAACGAGTATaactttgatttatagc                    >  1:6398266‑M1/1‑19 (MQ=255)
                 ttGATTTCCAACGAGTATaactttgatttatagtc                   >  1:829686‑M1/1‑18 (MQ=255)
                 ttGATTTCCAACGAGTATaactttgatttatagtc                   >  1:2119635‑M1/1‑18 (MQ=255)
                 ttGATTTCCAACGAGTATaactttgatttatagtc                   >  1:2368303‑M1/1‑18 (MQ=255)
                 ttGATTTCCAACGAGTATaactttgatttatagtc                   <  1:753642‑M1/35‑18 (MQ=255)
                 ttGATTTCCAACGAGTATaactttgatttatagtc                   >  1:2927090‑M1/1‑18 (MQ=255)
                   gATTTCCAACGAGTATaactttgatttatagtcag                 >  1:4203730‑M1/1‑16 (MQ=255)
                   gATTTCCAACGAGTATaactttgatttatagtcag                 >  1:5496023‑M1/1‑16 (MQ=255)
                    aTTTCCAACGAGTATaactttgatttatagtcagg                >  1:6464027‑M1/1‑15 (MQ=255)
                    aTTTCCAACGAGTATaactttgatttatagtcagg                >  1:6391391‑M1/1‑15 (MQ=255)
                       tCCAACGAGTATaactttgatttatagtcaggtgg             >  1:709233‑M1/1‑12 (MQ=255)
                         cAACGAGTATaactttgatttatagtcaggtgggg           >  1:5254456‑M1/1‑10 (MQ=255)
                          aaCGAGTATaactttgatttatagtcaggtggggc          >  1:1646513‑M1/1‑9 (MQ=255)
                          aaCGAGTATaactttgatttatagtcaggtggggc          <  1:286642‑M1/35‑27 (MQ=255)
                           aCGAGTATaactttgatttatagtcaggtggggct         >  1:5291507‑M1/1‑8 (MQ=255)
                           aCGAGTATaactttgatttatagtcaggtggggct         <  1:7508697‑M1/35‑28 (MQ=255)
                           aCGAGTATaactttgatttatagtcaggtggggct         <  1:1203909‑M1/35‑28 (MQ=255)
                           aCGAGTATaactttgatttatagtcaggtggggct         >  1:5620540‑M1/1‑8 (MQ=255)
                            cGAGTATaactttgatttatagtcaggtggggctt        >  1:3404942‑M1/1‑7 (MQ=255)
                            cGAGTATaactttgatttatagtcaggtggggctt        >  1:47347‑M1/1‑7 (MQ=255)
                            cGAGTATaactttgatttatagtcaggtggggctt        >  1:3869798‑M1/1‑7 (MQ=255)
                             gAGTATaactttgatttatagtcaggtggggcttt       <  1:7650784‑M1/35‑30 (MQ=255)
                             gAGTATaactttgatttatagtcaggtggggcttt       <  1:1401057‑M1/35‑30 (MQ=255)
                             gAGTATaactttgatttatagtcaggtggggcttt       <  1:2682189‑M1/35‑30 (MQ=255)
                             gAGTATaactttgatttatagtcaggtggggcttt       <  1:3681736‑M1/35‑30 (MQ=255)
                              aGTATaactttgatttatagtcaggtggggctttt      >  1:822943‑M1/1‑5 (MQ=255)
                              aGTATaactttgatttatagtcaggtggggctttt      >  1:2304342‑M1/1‑5 (MQ=255)
                               gTATaactttgatttatagtcaggtggggcttttc     >  1:5842753‑M1/1‑4 (MQ=255)
                               gTATaactttgatttatagtcaggtggggcttttc     <  1:5769494‑M1/35‑32 (MQ=255)
                               gTATaactttgatttatagtcaggtggggcttttc     <  1:5387027‑M1/35‑32 (MQ=255)
                               gTATaactttgatttatagtcaggtggggcttttc     >  1:2432812‑M1/1‑4 (MQ=255)
                               gTATaactttgatttatagtcaggtggggcttttc     >  1:6831000‑M1/1‑4 (MQ=255)
                               gTATaactttgatttatagtcaggtggggcttttc     >  1:3768612‑M1/1‑4 (MQ=255)
                                tataactttgatttatagtcaggtggggcttttct    >  1:274294‑M1/1‑3 (MQ=255)
                                 ataactttgatttatagtcaggtggggcttttctc   >  1:4407293‑M1/1‑2 (MQ=255)
                                 ataactttgatttatagtcaggtggggcttttctc   >  1:6547392‑M1/1‑2 (MQ=255)
                                 ataactttgatttatagtcaggtggggcttttctc   >  1:5355545‑M1/1‑2 (MQ=255)
                                 ataactttgatttatagtcaggtggggcttttctc   >  1:5355516‑M1/1‑2 (MQ=255)
                                 ataactttgatttatagtcaggtggggcttttctc   >  1:1001608‑M1/1‑2 (MQ=255)
                                 ataactttgatttatagtcaggtggggcttttctc   >  1:2010864‑M1/1‑2 (MQ=255)
                                  taactttgatttatagtcaggtggggcttttctct  >  1:6443903‑M1/1‑1 (MQ=255)
                                  taactttgatttatagtcaggtggggcttttctct  >  1:2159572‑M1/1‑1 (MQ=255)
                                  taactttgatttatagtcaggtggggcttttctct  >  1:1968837‑M1/1‑1 (MQ=255)
                                  taactttgatttatagtcaggtggggcttttctct  >  1:1645727‑M1/1‑1 (MQ=255)
                                  taactttgatttatagtcaggtggggcttttctct  >  1:1065889‑M1/1‑1 (MQ=255)
                                  |                                  
ATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  NC_000913/3720599‑3720667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑