BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,720,634	Δ1,442 bp	IS150‑mediated	insJ–insK	insJ, insK

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3720634	3722075	1442	107 [0]	[0] 101	insJ–insK	insJ,insK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3720633	0 (0.000)	101 (1.400)	40/68	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region
*	?	NC_000913	3722076 =	0 (0.000)	101 (1.400)	40/68	0.0	100%	intergenic (+27/+252)	insK/glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

Only 100 of 101 total aligned reads displayed.

GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCT > NC_000913/3722042‑3722109

ttccccgcctcctgtgttgatttccaacgagtata                                   >  1:1454021‑M2/35‑35 (MQ=255)

ttcccagcctcctgtgttgatttccaacgagtata                                   >  1:6492388‑M2/35‑35 (MQ=255)

ttcccagcctcctgtgttgatttccaacgagtata                                   >  1:2315331‑M2/35‑35 (MQ=255)

ttcccagcctcctgtgttgatttccaacgagtata                                   <  1:68042‑M2/1‑1 (MQ=255)

ttcccagcctcctgtgttgatttccaacgagtata                                   <  1:1086815‑M2/1‑1 (MQ=255)

 tcccagcctcctgtgttgatttccaacgagtataa                                  <  1:4844713‑M2/2‑1 (MQ=255)

 tcccagcctcctgtgttgatttccaacgagtataa                                  <  1:5161525‑M2/2‑1 (MQ=255)

 tcccagcctcctgtgttgatttccaacgagtataa                                  <  1:6089973‑M2/2‑1 (MQ=255)

  cccagcctcctgtgttgatttccaacgagtatAAc                                 >  1:1955185‑M2/33‑35 (MQ=255)

  cccagcctcctgtgttgatttccaacgagtatAAc                                 <  1:483656‑M2/3‑1 (MQ=255)

  cccagcctcctgtgttgatttccaacgagtatAAc                                 >  1:665038‑M2/33‑35 (MQ=255)

  cccagcctcctgtgttgatttccaacgagtatAAc                                 <  1:4163094‑M2/3‑1 (MQ=255)

  cccagcctcctgtgttgatttccaacgagtatAAc                                 >  1:1986950‑M2/33‑35 (MQ=255)

   ccagcctcctgtgttgatttccaacgagtatAACt                                >  1:13372‑M2/32‑35 (MQ=255)

    cagcctcctgtgttgatttccaacgagtatAACtt                               <  1:4642287‑M2/5‑1 (MQ=255)

    cagcctcctgtgttgatttccaacgagtatAACtt                               <  1:7466642‑M2/5‑1 (MQ=255)

     agcctcctgtgttgatttccaacgagtatAACttt                              <  1:1629354‑M2/6‑1 (MQ=255)

     agcctcctgtgttgatttccaacgagtatAACttt                              >  1:2798842‑M2/30‑35 (MQ=255)

     agcctcctgggttgatttccaacgagtatAACttt                              >  1:1756712‑M2/30‑35 (MQ=255)

      gcctcctgtgttgatttccaacgagtatAACTTTg                             <  1:89965‑M2/7‑1 (MQ=255)

        ctcctgtgttgatttccaacgagtatAACTTTGAt                           <  1:7403102‑M2/9‑1 (MQ=255)

         tcctgtgttgatttccaacgagtatAACTTTGAtt                          <  1:5997961‑M2/10‑1 (MQ=255)

         tcctgtgttgatttccaacgagtatAACTTTGAtt                          <  1:461387‑M2/10‑1 (MQ=255)

         tcctgtgttgatttccaacgagtatAACTTTGAtt                          >  1:6766802‑M2/26‑35 (MQ=255)

         tcctgtgttgatttccaacgagtatAACTTTGAtt                          <  1:94625‑M2/10‑1 (MQ=255)

         tcctgtgttgatttccaacgagtatAACTTTGAtt                          >  1:1783786‑M2/26‑35 (MQ=255)

          cctgtgttgatttccaacgagtatAACTTTGAttt                         <  1:2220263‑M2/11‑1 (MQ=255)

          cctgtgttgatttccaacgagtatAACTTTGAttt                         <  1:5383226‑M2/11‑1 (MQ=255)

          cctgtgttgatttccaacgagtatAACTTTGAttt                         <  1:526757‑M2/11‑1 (MQ=255)

          cctgtgttgatttccaacgagtatAACTTTGAttt                         <  1:1846729‑M2/11‑1 (MQ=255)

           ctgtgttgatttccaacgagtatAACTTTGATTta                        <  1:2288419‑M2/12‑1 (MQ=255)

           ctgtgttgatttccaacgagtatAACTTTGATTta                        <  1:6648230‑M2/12‑1 (MQ=255)

           ctgtgttgatttccaacgagtatAACTTTGATTta                        <  1:7503629‑M2/12‑1 (MQ=255)

           ctgtgttgatttccaacgagtatAACTTTGATTta                        <  1:4132153‑M2/12‑1 (MQ=255)

           ctgtgttgatttccaacgagtatAACTTTGATTta                        <  1:5120050‑M2/12‑1 (MQ=255)

           ctgtgttgatttccaacgagtatAACTTTGATTta                        <  1:7189511‑M2/12‑1 (MQ=255)

            tgtgttgatttccaacgagtgtAACTTTGATTtat                       <  1:2031410‑M2/13‑1 (MQ=255)

            tgtgttgatttccaacgagtatAACTTTGATTtat                       <  1:4813820‑M2/13‑1 (MQ=255)

            tgtgttgatttccaacgagtatAACTTTGATTtat                       <  1:1942992‑M2/13‑1 (MQ=255)

            tgtgttgatttccaacgagtatAACTTTGATTtat                       <  1:1943036‑M2/13‑1 (MQ=255)

            tgtgttgatttccaacgagtatAACTTTGATTtat                       <  1:1519044‑M2/13‑1 (MQ=255)

             gtgttgatttccaacgagtatAACTTTGATTtata                      <  1:3472510‑M2/14‑1 (MQ=255)

             gtgttgatttccaacgagtatAACTTTGATTtata                      <  1:1252242‑M2/14‑1 (MQ=255)

             gtgttgatttccaacgagtatAACTTTGATTtata                      <  1:3325139‑M2/14‑1 (MQ=255)

             gtgttgatttccaacgagtatAACTTTGATTtata                      <  1:2804961‑M2/14‑1 (MQ=255)

             gtgttgatttccaacgagtatAACTTTGATTtata                      <  1:701301‑M2/14‑1 (MQ=255)

              tgttgatttccaacgagtatAACTTTGATTTATAg                     <  1:4634182‑M2/15‑1 (MQ=255)

              tgttgatttccaacgagtatAACTTTGATTTATAg                     <  1:1268314‑M2/15‑1 (MQ=255)

              tgttgatttccaacgagtatAACTTTGATTTATAg                     <  1:3532358‑M2/15‑1 (MQ=255)

              tgttgatttccaacgagtatAACTTTGATTTATAg                     >  1:123783‑M2/21‑35 (MQ=255)

              tgttgatttccaacgagtatAACTTTGATTTATAg                     >  1:5453091‑M2/21‑35 (MQ=255)

               gttgatttccaacgagtatAACTTTGATTTATagc                    >  1:6398266‑M2/20‑34 (MQ=255)

               gttgatttccaacgagtatAACTTTGATTTATAGt                    <  1:4856262‑M2/16‑1 (MQ=255)

                ttgatttccaacgagtatAACTTTGATTTATAGTc                   >  1:2368303‑M2/19‑35 (MQ=255)

                ttgatttccaacgagtatAACTTTGATTTATAGTc                   >  1:829686‑M2/19‑35 (MQ=255)

                ttgatttccaacgagtatAACTTTGATTTATAGTc                   >  1:2927090‑M2/19‑35 (MQ=255)

                ttgatttccaacgagtatAACTTTGATTTATAGTc                   <  1:753642‑M2/17‑1 (MQ=255)

                ttgatttccaacgagtatAACTTTGATTTATAGTc                   >  1:2119635‑M2/19‑35 (MQ=255)

                  gatttccaacgagtatAACTTTGATTTATAGTCAg                 <  1:6857790‑M2/19‑1 (MQ=255)

                  gatttccaacgagtatAACTTTGATTTATAGTCAg                 >  1:4203730‑M2/17‑35 (MQ=255)

                  gatttccaacgagtatAACTTTGATTTATAGTCAg                 >  1:5496023‑M2/17‑35 (MQ=255)

                   atttccaacgagtatAACTTTGATTTATAGTCAgg                >  1:6464027‑M2/16‑35 (MQ=255)

                   atttccaacgagtatAACTTTGATTTATAGTCAgg                >  1:6391391‑M2/16‑35 (MQ=255)

                      tccaacgagtatAACTTTGATTTATAGTCAGGTgg             >  1:709233‑M2/13‑35 (MQ=255)

                        caacgagtatAACTTTGATTTATAGTCAGGTgggg           >  1:5254456‑M2/11‑35 (MQ=255)

                         aacgagtatAACTTTGATTTATAGTCAGGTGGGGc          <  1:286642‑M2/26‑1 (MQ=255)

                         aacgagtatAACTTTGATTTATAGTCAGGTGGGGc          >  1:1646513‑M2/10‑35 (MQ=255)

                          acgagtatAACTTTGATTTATAGTCAGGTGGGGCt         <  1:1203909‑M2/27‑1 (MQ=255)

                          acgagtatAACTTTGATTTATAGTCAGGTGGGGCt         <  1:7508697‑M2/27‑1 (MQ=255)

                          acgagtatAACTTTGATTTATAGTCAGGTGGGGCt         >  1:5291507‑M2/9‑35 (MQ=255)

                          acgagtatAACTTTGATTTATAGTCAGGTGGGGCt         >  1:5620540‑M2/9‑35 (MQ=255)

                           cgagtatAACTTTGATTTATAGTCAGGTGGGGCtt        >  1:3404942‑M2/8‑35 (MQ=255)

                           cgagtatAACTTTGATTTATAGTCAGGTGGGGCtt        >  1:3869798‑M2/8‑35 (MQ=255)

                           cgagtatAACTTTGATTTATAGTCAGGTGGGGCtt        >  1:47347‑M2/8‑35 (MQ=255)

                            gagtatAACTTTGATTTATAGTCAGGTGGGGCttt       <  1:7650784‑M2/29‑1 (MQ=255)

                            gagtatAACTTTGATTTATAGTCAGGTGGGGCttt       <  1:2682189‑M2/29‑1 (MQ=255)

                            gagtatAACTTTGATTTATAGTCAGGTGGGGCttt       <  1:3681736‑M2/29‑1 (MQ=255)

                            gagtatAACTTTGATTTATAGTCAGGTGGGGCttt       <  1:1401057‑M2/29‑1 (MQ=255)

                             agtatAACTTTGATTTATAGTCAGGTGGGGCtttt      >  1:2304342‑M2/6‑35 (MQ=255)

                             agtatAACTTTGATTTATAGTCAGGTGGGGCtttt      >  1:822943‑M2/6‑35 (MQ=255)

                              gtatAACTTTGATTTATAGTCAGGTGGGGCTTTtc     >  1:5842753‑M2/5‑35 (MQ=255)

                              gtatAACTTTGATTTATAGTCAGGTGGGGCTTTtc     >  1:2432812‑M2/5‑35 (MQ=255)

                              gtatAACTTTGATTTATAGTCAGGTGGGGCTTTtc     >  1:3768612‑M2/5‑35 (MQ=255)

                              gtatAACTTTGATTTATAGTCAGGTGGGGCTTTtc     >  1:6831000‑M2/5‑35 (MQ=255)

                              gtatAACTTTGATTTATAGTCAGGTGGGGCTTTtc     <  1:5387027‑M2/31‑1 (MQ=255)

                              gtatAACTTTGATTTATAGTCAGGTGGGGCTTTtc     <  1:5769494‑M2/31‑1 (MQ=255)

                               tatAACTTTGATTTATAGTCAGGTGGGGCTTTtct    >  1:274294‑M2/4‑35 (MQ=255)

                                atAACTTTGATTTATAGTCAGGTGGGGCTTTtctc   >  1:1001608‑M2/3‑35 (MQ=255)

                                atAACTTTGATTTATAGTCAGGTGGGGCTTTtctc   >  1:4407293‑M2/3‑35 (MQ=255)

                                atAACTTTGATTTATAGTCAGGTGGGGCTTTtctc   >  1:2010864‑M2/3‑35 (MQ=255)

                                atAACTTTGATTTATAGTCAGGTGGGGCTTTtctc   >  1:6547392‑M2/3‑35 (MQ=255)

                                atAACTTTGATTTATAGTCAGGTGGGGCTTTtctc   >  1:5355516‑M2/3‑35 (MQ=255)

                                atAACTTTGATTTATAGTCAGGTGGGGCTTTtctc   >  1:5355545‑M2/3‑35 (MQ=255)

                                atAACTTTGATTTATAGTCAGGTGGGGCTTTtctc   <  1:5967955‑M2/33‑1 (MQ=255)

                                atAACTTTGATTTATAGTCAGGTGGGGCTTTtctc   >  1:2303448‑M2/3‑35 (MQ=255)

                                 tAACTTTGATTTATAGTCAGGTGGGGCTTTTctct  >  1:1968837‑M2/2‑35 (MQ=255)

                                 tAACTTTGATTTATAGTCAGGTGGGGCTTTTctct  >  1:1645727‑M2/2‑35 (MQ=255)

                                 tAACTTTGATTTATAGTCAGGTGGGGCTTTTctct  >  1:2159572‑M2/2‑35 (MQ=255)

                                 tAACTTTGATTTATAGTCAGGTGGGGCTTTTctct  >  1:6443903‑M2/2‑35 (MQ=255)

                                 tAACTTTGATTTATAGTCAGGTGGGGCTTTTctct  >  1:1065889‑M2/2‑35 (MQ=255)

GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCT > NC_000913/3722042‑3722109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`