Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,997,112 Δ26,567 bp [tcyN]–[fliR] 32 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1997112 2023678 26567 112 [0] [0] 114 [tcyN]–[fliR] [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19971110 (0.000)110 (1.380) 63/98 0.0 100% coding (704/753 nt) tcyN cystine ABC transporter ATP binding subunit
?NC_000913 2023679 = 0 (0.000)intergenic (+1/‑289) fliR/rcsA flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA

Only 100 of 112 total aligned reads displayed.

TTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG  >  NC_000913/1997062‑1997160
                                                 |                                                 
ttattGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCgg                                                   <  1:4213326/50‑1 (MQ=255)
ttattGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCgg                                                   <  1:1381787/50‑1 (MQ=255)
  aTTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGGGGCCGCTCGGtt                                                 >  1:2649279‑M1/1‑48 (MQ=255)
  aTTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGt                                                  <  1:5800842‑M1/49‑2 (MQ=255)
   ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGtt                                                 <  1:1784311‑M1/49‑3 (MQ=255)
    tGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc                                               >  1:5240258‑M1/1‑46 (MQ=255)
     gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccg                                              >  1:1752206‑M1/1‑45 (MQ=255)
     gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc                                               <  1:5688720‑M1/49‑5 (MQ=255)
     gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc                                               <  1:377165‑M1/49‑5 (MQ=255)
      cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgt                                             <  1:716517‑M1/50‑7 (MQ=255)
      cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccg                                              <  1:4550400‑M1/49‑6 (MQ=255)
      cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccg                                              >  1:3283022‑M1/1‑44 (MQ=255)
         cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaac                                          <  1:3497458‑M1/50‑10 (MQ=255)
         cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCCGCTCGGgtccgtaac                                          >  1:5023259‑M1/1‑41 (MQ=255)
          agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg                                         >  1:2501745‑M1/1‑40 (MQ=255)
          agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacg                                         >  1:1210705‑M1/1‑40 (MQ=255)
           gAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgt                                        <  1:2934108‑M1/50‑12 (MQ=255)
            aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtt                                       <  1:3529273‑M1/50‑13 (MQ=255)
            aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtt                                       >  1:1305173‑M1/1‑38 (MQ=255)
            aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtt                                       <  1:778036‑M1/50‑13 (MQ=255)
            aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacgtt                                       >  1:5922957‑M1/1‑38 (MQ=255)
            aaaCTTCTCGAGGAACTGGCGGGGGGGAGGCTGCTCGGttccgtaacgtt                                       >  1:1638188‑M1/1‑38 (MQ=255)
             aaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttt                                      <  1:3754712‑M1/50‑14 (MQ=255)
             aaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttt                                      <  1:2290017‑M1/50‑14 (MQ=255)
             aaCTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGgtccgtaacgttt                                      >  1:4926616‑M1/1‑37 (MQ=255)
                  ctcGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatc                                   <  1:154033‑M1/48‑17 (MQ=255)
                    cGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt                               >  1:1803947‑M1/1‑30 (MQ=255)
                    cGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt                               >  1:694274‑M1/1‑30 (MQ=255)
                     gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtt                              <  1:2772509‑M1/50‑22 (MQ=255)
                     gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtt                              <  1:5510577‑M1/50‑22 (MQ=255)
                     gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt                               <  1:2161321‑M1/49‑21 (MQ=255)
                     gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt                               <  1:1516585‑M1/49‑21 (MQ=255)
                     gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt                               >  1:2894831‑M1/1‑29 (MQ=255)
                     gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcat                                 <  1:346196‑M1/47‑19 (MQ=255)
                     gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcat                                 <  1:3622608‑M1/47‑19 (MQ=255)
                     gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcat                                 <  1:1778796‑M1/47‑19 (MQ=255)
                      aGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta                             <  1:2069572‑M1/50‑23 (MQ=255)
                      aGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta                             <  1:1167760‑M1/50‑23 (MQ=255)
                      aGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacgtttatcatgtta                             >  1:2041956‑M1/1‑28 (MQ=255)
                       ggAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttat                            <  1:2450148‑M1/50‑24 (MQ=255)
                       ggAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttat                            <  1:2633724‑M1/50‑24 (MQ=255)
                        gAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatc                           <  1:5568620‑M1/50‑25 (MQ=255)
                         aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc                          <  1:3029531‑M1/50‑26 (MQ=255)
                         aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc                          >  1:2847491‑M1/1‑25 (MQ=255)
                          aCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct                         <  1:4172063‑M1/50‑27 (MQ=255)
                              gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagg                     <  1:1773369‑M1/50‑31 (MQ=255)
                              gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaag                      <  1:307712‑M1/49‑30 (MQ=255)
                              gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaag                      <  1:4480834‑M1/49‑30 (MQ=255)
                              gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaag                      <  1:4342477‑M1/49‑30 (MQ=255)
                              gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaag                      <  1:3821122‑M1/49‑30 (MQ=255)
                               cGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagga                    <  1:1190029‑M1/50‑32 (MQ=255)
                               cGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagga                    <  1:3244073‑M1/50‑32 (MQ=255)
                                gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat                   >  1:4987531‑M1/1‑18 (MQ=255)
                                gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat                   >  1:2173885‑M1/1‑18 (MQ=255)
                                gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat                   >  1:2082658‑M1/1‑18 (MQ=255)
                                gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat                   <  1:705061‑M1/50‑33 (MQ=255)
                                gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat                   >  1:806788‑M1/1‑18 (MQ=255)
                                 ggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatt                  <  1:1005842‑M1/50‑34 (MQ=255)
                                 ggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatt                  <  1:5597970‑M1/50‑34 (MQ=255)
                                 ggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat                   >  1:4379556‑M1/1‑17 (MQ=255)
                                  gTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatta                 >  1:1949287‑M1/1‑16 (MQ=255)
                                   tGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattat                <  1:3953101‑M1/50‑36 (MQ=255)
                                   tGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattat                <  1:4823309‑M1/50‑36 (MQ=255)
                                    gCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatc               >  1:1461982‑M1/1‑14 (MQ=255)
                                     cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc              <  1:5421871‑M1/50‑38 (MQ=255)
                                      gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg             <  1:4510990‑M1/50‑39 (MQ=255)
                                      gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg             <  1:3086209‑M1/50‑39 (MQ=255)
                                      gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc              >  1:2347966‑M1/1‑12 (MQ=255)
                                        ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccgaa           <  1:5711419‑M1/50‑41 (MQ=255)
                                        ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccgaa           <  1:5145781‑M1/50‑41 (MQ=255)
                                        ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccga            >  1:3087943‑M1/1‑10 (MQ=255)
                                         gctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa          <  1:1795902‑M1/50‑42 (MQ=255)
                                          ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaa         <  1:3330860‑M1/50‑43 (MQ=255)
                                          ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaa         <  1:660251‑M1/50‑43 (MQ=255)
                                          ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa          >  1:4195912‑M1/1‑8 (MQ=255)
                                            gctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa        >  1:2792859‑M1/1‑6 (MQ=255)
                                             ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaata      <  1:4365493‑M1/50‑46 (MQ=255)
                                             ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat       <  1:1658092‑M1/49‑45 (MQ=255)
                                             ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat       <  1:1796961‑M1/49‑45 (MQ=255)
                                             ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat       <  1:5261789‑M1/49‑45 (MQ=255)
                                             ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat       >  1:160820‑M1/1‑5 (MQ=255)
                                             ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat       <  1:189793‑M1/49‑45 (MQ=255)
                                             ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa        <  1:2041536‑M1/48‑44 (MQ=255)
                                             ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa        <  1:4637669‑M1/48‑44 (MQ=255)
                                               cGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa     >  1:1030460‑M1/1‑3 (MQ=255)
                                                ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata   <  1:3254150‑M1/50‑49 (MQ=255)
                                                ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata   <  1:6011462‑M1/50‑49 (MQ=255)
                                                ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata   >  1:1891149‑M1/1‑2 (MQ=255)
                                                ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa     <  1:287996‑M1/48‑47 (MQ=255)
                                                ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa     <  1:5945914‑M1/48‑47 (MQ=255)
                                                ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa     <  1:2062447‑M1/48‑47 (MQ=255)
                                                ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa     <  1:895043‑M1/48‑47 (MQ=255)
                                                 gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac  <  1:5266790‑M1/50‑50 (MQ=255)
                                                 gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac  >  1:4423180‑M1/1‑1 (MQ=255)
                                                 gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac  <  1:3323506‑M1/50‑50 (MQ=255)
                                                 gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac  >  1:3256180‑M1/1‑1 (MQ=255)
                                                 gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac  <  1:2781971‑M1/50‑50 (MQ=255)
                                                 gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac  <  1:2619670‑M1/50‑50 (MQ=255)
                                                 gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac  >  1:1976721‑M1/1‑1 (MQ=255)
                                                 gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac  >  1:1838939‑M1/1‑1 (MQ=255)
                                                 |                                                 
TTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG  >  NC_000913/1997062‑1997160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.