| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 86 [0] | [0] 81 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 73 (0.650) | 52/96 | 0.1 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765157‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > NC_000913/770613‑770661 CGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1672278/1‑50CGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:8282773/1‑50 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:5075602/49‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1457128/1‑49 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:7821366/49‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:8379467/49‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATA < 1:3138885/50‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATA < 1:2548882/50‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:3237506/1‑48 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:7085942/1‑48 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG < 1:212790/50‑1 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG < 1:544961/50‑1 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG < 1:5470644/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 1:8224056/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 1:4477558/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:4354925/1‑49 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 1:8117570/50‑1 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 1:1056498/50‑1 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC > 1:6036969/1‑49 GATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA > 1:5963811/1‑50 GATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA > 1:4491378/1‑50 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:879347/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:6563742/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:3411019/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:1888119/1‑50 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA < 1:4448062/49‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:6355479/50‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:2377968/1‑49 TTTTCGCTGCGCTATCAGGGTAAA‑GTATAGTCATCGGTATTATAGCAATC < 1:2839883/50‑1 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:8528141/49‑1 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA > 1:5610687/1‑50 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA > 1:6031013/1‑50 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA < 1:4284964/49‑1 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC > 1:3965157/1‑50 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC > 1:3192684/1‑50 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:5776798/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC < 1:3770112/49‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 1:5321173/1‑49 TGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG > 1:4530551/1‑49 GCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG > 1:1387874/1‑48 GCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG > 1:6724591/1‑48 GCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG > 1:3332382/1‑48 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGA < 1:8457065/48‑1 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC < 1:5610326/50‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCC < 1:1527339/50‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCC < 1:6412930/50‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCC < 1:7431767/50‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:237316/1‑49 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:3916456/1‑50 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 1:1402414/48‑1 CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:4538331/1‑49 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA < 1:4886289/50‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA > 1:4386697/1‑50 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:622089/1‑50 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:8079841/50‑1 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG < 1:6612840/50‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC < 1:8078016/50‑1 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG < 1:1929790/49‑1 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:4297278/1‑50 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 1:1897030/49‑1 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:2497829/1‑48 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:3921720/1‑48 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:2223988/1‑47 AGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:8569395/1‑46 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAT > 1:5949561/1‑50 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT < 1:3801588/50‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG < 1:3845970/49‑1 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT < 1:3316599/50‑1 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:6882530/1‑50 CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:3262509/1‑49 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA < 1:8088332/50‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:7396752/1‑50 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:720044/49‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:2505968/49‑1 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACA < 1:5411160/50‑1 ATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACA > 1:7930213/1‑49 ATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACA > 1:6749991/1‑49 ATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACA > 1:4613693/1‑49 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 1:1972454/49‑1 TATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > 1:6691397/1‑50 TATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > 1:1089576/1‑50 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > 1:2277201/1‑50 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > 1:2116089/1‑50 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG < 1:6049085/49‑1 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG < 1:4458763/49‑1 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG < 1:5605753/49‑1 CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765157‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGG > NC_000913/770613‑770661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |