Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 86 [0] | [0] 81 | [mngR]–mngB | [mngR],mngA,mngB |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 765207 | 0 (0.000) | 73 (0.650) | 52/96 | 0.1 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCAC > NC_000913/765157‑765256 | cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1672278‑M1/1‑50 (MQ=255) cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:8282773‑M1/1‑50 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:5075602‑M1/49‑1 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1457128‑M1/1‑49 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:7821366‑M1/49‑1 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:8379467‑M1/49‑1 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta < 1:3138885‑M1/50‑3 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta < 1:2548882‑M1/50‑3 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:3237506‑M1/1‑48 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:7085942‑M1/1‑48 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag < 1:212790‑M1/50‑4 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag < 1:544961‑M1/50‑4 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag < 1:5470644‑M1/50‑4 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 1:8224056‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 1:4477558‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:4354925‑M1/1‑46 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:8117570‑M1/50‑6 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:1056498‑M1/50‑6 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc > 1:6036969‑M1/1‑45 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:5963811‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:4491378‑M1/1‑44 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:879347‑M1/50‑8 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:6563742‑M1/50‑8 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:3411019‑M1/50‑8 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:1888119‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa < 1:4448062‑M1/49‑7 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:6355479‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:2377968‑M1/1‑42 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑GTATAGTCATCGGTATTAtagcaatc < 1:2839883‑M1/50‑9 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 1:8528141‑M1/49‑10 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa > 1:5610687‑M1/1‑39 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa > 1:6031013‑M1/1‑39 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa < 1:4284964‑M1/49‑11 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:3965157‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:3192684‑M1/1‑38 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:5776798‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac < 1:3770112‑M1/49‑13 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 1:5321173‑M1/1‑36 (MQ=255) tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:4530551‑M1/1‑35 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:1387874‑M1/1‑34 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:6724591‑M1/1‑34 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:3332382‑M1/1‑34 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccga < 1:8457065‑M1/48‑16 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc < 1:5610326‑M1/50‑19 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc < 1:1527339‑M1/50‑20 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc < 1:6412930‑M1/50‑20 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc < 1:7431767‑M1/50‑20 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:237316‑M1/1‑31 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:3916456‑M1/1‑30 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca < 1:1402414‑M1/48‑21 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:4538331‑M1/1‑27 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata < 1:4886289‑M1/50‑25 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata > 1:4386697‑M1/1‑26 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat > 1:622089‑M1/1‑25 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 1:8079841‑M1/50‑26 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg < 1:6612840‑M1/50‑27 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:8078016‑M1/50‑28 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg < 1:1929790‑M1/49‑32 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:4297278‑M1/1‑18 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcc < 1:1897030‑M1/49‑34 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:2497829‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:3921720‑M1/1‑16 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:2223988‑M1/1‑15 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:8569395‑M1/1‑14 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat > 1:5949561‑M1/1‑13 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt < 1:3801588‑M1/50‑39 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg < 1:3845970‑M1/49‑40 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt < 1:3316599‑M1/50‑42 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt > 1:6882530‑M1/1‑9 (MQ=255) cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt > 1:3262509‑M1/1‑8 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga < 1:8088332‑M1/50‑44 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 1:7396752‑M1/1‑7 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 1:720044‑M1/49‑43 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 1:2505968‑M1/49‑43 (MQ=255) tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca < 1:5411160‑M1/50‑46 (MQ=255) attatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca > 1:7930213‑M1/1‑4 (MQ=255) attatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca > 1:6749991‑M1/1‑4 (MQ=255) attatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca > 1:4613693‑M1/1‑4 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa < 1:1972454‑M1/49‑47 (MQ=255) tatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag > 1:6691397‑M1/1‑2 (MQ=255) tatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag > 1:1089576‑M1/1‑2 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaagg > 1:2277201‑M1/1‑1 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaagg > 1:2116089‑M1/1‑1 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag < 1:6049085‑M1/49‑49 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag < 1:4458763‑M1/49‑49 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag < 1:5605753‑M1/49‑49 (MQ=255) | CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCAC > NC_000913/765157‑765256 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |