| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 86 [0] | [0] 81 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 73 (0.650) | 52/96 | 0.1 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
CTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770565‑770662 | cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata < 1:2548882‑M2/2‑1 (MQ=255)cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata < 1:3138885‑M2/2‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg < 1:544961‑M2/3‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg < 1:212790‑M2/3‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg < 1:5470644‑M2/3‑1 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:4354925‑M2/47‑49 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc < 1:4477558‑M2/4‑1 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc < 1:8224056‑M2/4‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc > 1:6036969‑M2/46‑49 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:8117570‑M2/5‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:1056498‑M2/5‑1 (MQ=255) gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa > 1:5963811‑M2/45‑50 (MQ=255) gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa > 1:4491378‑M2/45‑50 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa < 1:4448062‑M2/6‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt < 1:6563742‑M2/7‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt < 1:879347‑M2/7‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt < 1:3411019‑M2/7‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt > 1:1888119‑M2/44‑50 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt > 1:2377968‑M2/43‑49 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 1:6355479‑M2/8‑1 (MQ=255) ttttcgctgcgctatcagggtaaagtatagtcatcggtattaTAGCAATc < 1:2839883‑M2/8‑1 (MQ=255) ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa < 1:8528141‑M2/9‑1 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa > 1:5610687‑M2/40‑50 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa > 1:6031013‑M2/40‑50 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:4284964‑M2/10‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:3192684‑M2/39‑50 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:3965157‑M2/39‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:5776798‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc < 1:3770112‑M2/12‑1 (MQ=255) ctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:5321173‑M2/37‑49 (MQ=255) tgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg > 1:4530551‑M2/36‑49 (MQ=255) gcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg > 1:6724591‑M2/35‑48 (MQ=255) gcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg > 1:1387874‑M2/35‑48 (MQ=255) gcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg > 1:3332382‑M2/35‑48 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGa < 1:8457065‑M2/15‑1 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc < 1:5610326‑M2/18‑1 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc < 1:7431767‑M2/19‑1 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc < 1:1527339‑M2/19‑1 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc < 1:6412930‑M2/19‑1 (MQ=255) ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:237316‑M2/32‑49 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:3916456‑M2/31‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca < 1:1402414‑M2/20‑1 (MQ=255) cagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:4538331‑M2/28‑49 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata > 1:4386697‑M2/27‑50 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata < 1:4886289‑M2/24‑1 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat > 1:622089‑M2/26‑50 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat < 1:8079841‑M2/25‑1 (MQ=255) ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg < 1:6612840‑M2/26‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc < 1:8078016‑M2/27‑1 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg < 1:1929790‑M2/31‑1 (MQ=255) ttatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:4297278‑M2/19‑50 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGcc < 1:1897030‑M2/33‑1 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:3921720‑M2/17‑48 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:2497829‑M2/17‑48 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:2223988‑M2/16‑47 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:8569395‑M2/15‑46 (MQ=255) gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAt > 1:5949561‑M2/14‑50 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt < 1:3801588‑M2/38‑1 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg < 1:3845970‑M2/39‑1 (MQ=255) tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:6882530‑M2/10‑50 (MQ=255) tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt < 1:3316599‑M2/41‑1 (MQ=255) cggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:3262509‑M2/9‑49 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 1:720044‑M2/42‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 1:2505968‑M2/42‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa < 1:8088332‑M2/43‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:7396752‑M2/8‑50 (MQ=255) tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa < 1:5411160‑M2/45‑1 (MQ=255) attaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:6749991‑M2/5‑49 (MQ=255) attaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:4613693‑M2/5‑49 (MQ=255) attaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:7930213‑M2/5‑49 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa < 1:1972454‑M2/46‑1 (MQ=255) taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg > 1:1089576‑M2/3‑50 (MQ=255) taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg > 1:6691397‑M2/3‑50 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg > 1:2116089‑M2/2‑50 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg > 1:2277201‑M2/2‑50 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg < 1:6049085‑M2/48‑1 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg < 1:5605753‑M2/48‑1 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg < 1:4458763‑M2/48‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAggg < 1:2240524/50‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg < 1:7541260/49‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg < 1:204365/49‑1 (MQ=255) | CTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770565‑770662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |