BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	765,208	Δ5,405 bp		[mngR]–mngB	[mngR], mngA, mngB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	765208	770612	5405	86 [0]	[0] 81	[mngR]–mngB	[mngR],mngA,mngB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 765207	0 (0.000)	73 (0.650)	52/96	0.1	100%	coding (669/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
*	?	NC_000913	770613 =	0 (0.000)	73 (0.650)	52/96	0.1	100%	intergenic (+2/‑845)	mngB/cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I

CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCAC  >  NC_000913/765157‑765256

cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                   >  1:1672278‑M1/1‑50 (MQ=255)

cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                   >  1:8282773‑M1/1‑50 (MQ=255)

 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                   <  1:5075602‑M1/49‑1 (MQ=255)

 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                   >  1:1457128‑M1/1‑49 (MQ=255)

 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                   <  1:7821366‑M1/49‑1 (MQ=255)

 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                   <  1:8379467‑M1/49‑1 (MQ=255)

  cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta                                                 <  1:3138885‑M1/50‑3 (MQ=255)

  cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta                                                 <  1:2548882‑M1/50‑3 (MQ=255)

  cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                   >  1:3237506‑M1/1‑48 (MQ=255)

  cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                   >  1:7085942‑M1/1‑48 (MQ=255)

   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                                <  1:212790‑M1/50‑4 (MQ=255)

   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                                <  1:544961‑M1/50‑4 (MQ=255)

   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                                <  1:5470644‑M1/50‑4 (MQ=255)

    atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                                               <  1:8224056‑M1/50‑5 (MQ=255)

    atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                                               <  1:4477558‑M1/50‑5 (MQ=255)

    atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                                >  1:4354925‑M1/1‑46 (MQ=255)

     tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                                              <  1:8117570‑M1/50‑6 (MQ=255)

     tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                                              <  1:1056498‑M1/50‑6 (MQ=255)

     tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                                               >  1:6036969‑M1/1‑45 (MQ=255)

      gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                             >  1:5963811‑M1/1‑44 (MQ=255)

      gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                             >  1:4491378‑M1/1‑44 (MQ=255)

       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                            <  1:879347‑M1/50‑8 (MQ=255)

       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                            <  1:6563742‑M1/50‑8 (MQ=255)

       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                            <  1:3411019‑M1/50‑8 (MQ=255)

       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                            >  1:1888119‑M1/1‑43 (MQ=255)

       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                             <  1:4448062‑M1/49‑7 (MQ=255)

        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                                           <  1:6355479‑M1/50‑9 (MQ=255)

        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                            >  1:2377968‑M1/1‑42 (MQ=255)

        ttttCGCTGCGCTATCAGGGTAAA‑GTATAGTCATCGGTATTAtagcaatc                                           <  1:2839883‑M1/50‑9 (MQ=255)

          ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca                                          <  1:8528141‑M1/49‑10 (MQ=255)

           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                                        >  1:5610687‑M1/1‑39 (MQ=255)

           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                                        >  1:6031013‑M1/1‑39 (MQ=255)

           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                                         <  1:4284964‑M1/49‑11 (MQ=255)

            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                       >  1:3965157‑M1/1‑38 (MQ=255)

            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                       >  1:3192684‑M1/1‑38 (MQ=255)

             gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                      <  1:5776798‑M1/50‑14 (MQ=255)

             gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                       <  1:3770112‑M1/49‑13 (MQ=255)

              cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                      >  1:5321173‑M1/1‑36 (MQ=255)

               tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                     >  1:4530551‑M1/1‑35 (MQ=255)

                gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                     >  1:1387874‑M1/1‑34 (MQ=255)

                gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                     >  1:6724591‑M1/1‑34 (MQ=255)

                gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                     >  1:3332382‑M1/1‑34 (MQ=255)

                 cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccga                                    <  1:8457065‑M1/48‑16 (MQ=255)

                  gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                 <  1:5610326‑M1/50‑19 (MQ=255)

                   cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc                                <  1:1527339‑M1/50‑20 (MQ=255)

                   cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc                                <  1:6412930‑M1/50‑20 (MQ=255)

                   cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc                                <  1:7431767‑M1/50‑20 (MQ=255)

                   cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                 >  1:237316‑M1/1‑31 (MQ=255)

                    tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                               >  1:3916456‑M1/1‑30 (MQ=255)

                      tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                               <  1:1402414‑M1/48‑21 (MQ=255)

                       cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca                             >  1:4538331‑M1/1‑27 (MQ=255)

                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata                           <  1:4886289‑M1/50‑25 (MQ=255)

                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata                           >  1:4386697‑M1/1‑26 (MQ=255)

                         gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat                          >  1:622089‑M1/1‑25 (MQ=255)

                         gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat                          <  1:8079841‑M1/50‑26 (MQ=255)

                          ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg                         <  1:6612840‑M1/50‑27 (MQ=255)

                           gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                        <  1:8078016‑M1/50‑28 (MQ=255)

                                attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg                    <  1:1929790‑M1/49‑32 (MQ=255)

                                 ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                   >  1:4297278‑M1/1‑18 (MQ=255)

                                   ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcc                  <  1:1897030‑M1/49‑34 (MQ=255)

                                   ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                   >  1:2497829‑M1/1‑16 (MQ=255)

                                   ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                   >  1:3921720‑M1/1‑16 (MQ=255)

                                    taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                   >  1:2223988‑M1/1‑15 (MQ=255)

                                     aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                   >  1:8569395‑M1/1‑14 (MQ=255)

                                      gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat              >  1:5949561‑M1/1‑13 (MQ=255)

                                       tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt             <  1:3801588‑M1/50‑39 (MQ=255)

                                         aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg            <  1:3845970‑M1/49‑40 (MQ=255)

                                          tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt          <  1:3316599‑M1/50‑42 (MQ=255)

                                          tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt          >  1:6882530‑M1/1‑9 (MQ=255)

                                           cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt          >  1:3262509‑M1/1‑8 (MQ=255)

                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga        <  1:8088332‑M1/50‑44 (MQ=255)

                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga        >  1:7396752‑M1/1‑7 (MQ=255)

                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg         <  1:720044‑M1/49‑43 (MQ=255)

                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg         <  1:2505968‑M1/49‑43 (MQ=255)

                                              tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca      <  1:5411160‑M1/50‑46 (MQ=255)

                                               attatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca      >  1:7930213‑M1/1‑4 (MQ=255)

                                               attatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca      >  1:6749991‑M1/1‑4 (MQ=255)

                                               attatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca      >  1:4613693‑M1/1‑4 (MQ=255)

                                                ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa     <  1:1972454‑M1/49‑47 (MQ=255)

                                                 tatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag   >  1:6691397‑M1/1‑2 (MQ=255)

                                                 tatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag   >  1:1089576‑M1/1‑2 (MQ=255)

                                                  atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaagg  >  1:2277201‑M1/1‑1 (MQ=255)

                                                  atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaagg  >  1:2116089‑M1/1‑1 (MQ=255)

                                                  atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag   <  1:6049085‑M1/49‑49 (MQ=255)

                                                  atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag   <  1:4458763‑M1/49‑49 (MQ=255)

                                                  atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag   <  1:5605753‑M1/49‑49 (MQ=255)

CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCAC  >  NC_000913/765157‑765256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`