| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 96 [0] | [0] 97 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 94 (0.820) | 54/98 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATT > NC_000913/3090296‑3090393 | aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:7079160/1‑50 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg < 1:2484920/49‑1 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc < 1:5577497‑M1/50‑2 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:3195022‑M1/1‑48 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct < 1:4542426‑M1/50‑4 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:8444061‑M1/1‑47 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:7885140‑M1/1‑47 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:6448168‑M1/1‑47 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:1850098‑M1/50‑5 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:7730306‑M1/50‑5 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:4407493‑M1/1‑46 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:7090678‑M1/50‑6 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:128747‑M1/50‑6 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:3061984‑M1/50‑7 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:3005404‑M1/50‑7 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:3504571‑M1/50‑8 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:5312770‑M1/1‑43 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:2535690‑M1/50‑8 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:3911184‑M1/1‑42 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:3031349‑M1/50‑10 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:1771960‑M1/50‑10 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacaata < 1:3091266‑M1/50‑10 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:1272026‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:5227846‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:2946804‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag > 1:6814688‑M1/1‑40 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag > 1:7768489‑M1/1‑40 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag > 1:1365435‑M1/1‑40 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:7539109‑M1/1‑37 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:6770918‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:3812331‑M1/48‑12 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg < 1:2699643‑M1/49‑14 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:6299606‑M1/1‑36 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:2270297‑M1/1‑36 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:5152852‑M1/1‑36 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:5186906‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:956736‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 1:2251407‑M1/49‑15 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat < 1:7919807‑M1/50‑17 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:6153506‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:7070068‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:2976115‑M1/1‑33 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 1:3664364‑M1/1‑32 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 1:3617884‑M1/50‑20 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:6906099‑M1/49‑19 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:3606194‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:2566692‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:7906039‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:4662054‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:8108855‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:3936185‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:8330432‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:3558073‑M1/1‑30 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:578730‑M1/50‑22 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:821909‑M1/50‑22 (MQ=255) ttGCCGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt > 1:1276473‑M1/1‑29 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:3444406‑M1/1‑28 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt > 1:4643808‑M1/1‑27 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:2678520‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:872409‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:2234484‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:5759135‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGGGcctacactagcgggattctttt < 1:4093826‑M1/49‑23 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg < 1:2377525‑M1/50‑25 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:7677597‑M1/49‑24 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:3442780‑M1/49‑24 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:8020062‑M1/1‑25 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:2457326‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:1041138‑M1/1‑23 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:2139325‑M1/1‑23 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt < 1:1959958‑M1/48‑26 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa < 1:4969114‑M1/50‑29 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa > 1:5349873‑M1/1‑22 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac > 1:7043675‑M1/1‑21 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac > 1:3855854‑M1/1‑21 (MQ=255) cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc > 1:1272685‑M1/1‑20 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:5523179‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:6803244‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:6117983‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:3970684‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:5277129‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc < 1:336771‑M1/49‑31 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:6967188‑M1/1‑18 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:755983‑M1/50‑33 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:3427811‑M1/50‑33 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:7835409‑M1/50‑33 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:1419456‑M1/49‑35 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:3215830‑M1/49‑35 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc > 1:3579312‑M1/1‑14 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc > 1:1856248‑M1/1‑14 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc > 1:6017482‑M1/1‑14 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac < 1:5457098‑M1/49‑36 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc > 1:3698537‑M1/1‑12 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca < 1:6635604‑M1/50‑40 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:1420015‑M1/3‑7 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtaca < 1:3790771‑M1/50‑48 (MQ=255) | ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATT > NC_000913/3090296‑3090393 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |