BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,090,347	Δ708 bp	coding (1‑708/708 nt)	endA →	DNA‑specific endonuclease I

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3090347	3091054	708	96 [0]	[0] 97	endA	DNA‑specific endonuclease I

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3090346	0 (0.000)	94 (0.820)	54/98	0.1	100%	intergenic (+94/‑1)	yggI/endA	conserved protein YggI/DNA‑specific endonuclease I
*	?	NC_000913	3091055 =	0 (0.000)	94 (0.820)	54/98	0.1	100%	intergenic (+1/‑79)	endA/rsmE	DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase

CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC  >  NC_000913/3091006‑3091104

ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc                                                   <  1:5577497‑M2/1‑1 (MQ=255)

 caaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc                                                  >  1:3195022‑M2/49‑50 (MQ=255)

  aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc                                                  >  1:8444061‑M2/48‑49 (MQ=255)

  aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc                                                  >  1:7885140‑M2/48‑49 (MQ=255)

  aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc                                                  >  1:6448168‑M2/48‑49 (MQ=255)

  aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCt                                                 <  1:4542426‑M2/3‑1 (MQ=255)

   aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa                                                >  1:4407493‑M2/47‑50 (MQ=255)

   aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa                                                <  1:7730306‑M2/4‑1 (MQ=255)

   aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa                                                <  1:1850098‑M2/4‑1 (MQ=255)

    aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTac                                               <  1:128747‑M2/5‑1 (MQ=255)

    aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTac                                               <  1:7090678‑M2/5‑1 (MQ=255)

     acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca                                              <  1:3061984‑M2/6‑1 (MQ=255)

     acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca                                              <  1:3005404‑M2/6‑1 (MQ=255)

      cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac                                             <  1:3504571‑M2/7‑1 (MQ=255)

      cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac                                             >  1:5312770‑M2/44‑50 (MQ=255)

      cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac                                             <  1:2535690‑M2/7‑1 (MQ=255)

       agctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac                                             >  1:3911184‑M2/43‑49 (MQ=255)

        gctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTa                                           <  1:3031349‑M2/9‑1 (MQ=255)

        gctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTa                                           <  1:1771960‑M2/9‑1 (MQ=255)

        gctttcgctacgttgctggctcgttttaacacggagaagtgCCTACAATa                                           <  1:3091266‑M2/9‑1 (MQ=255)

         ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg                                          >  1:6814688‑M2/41‑50 (MQ=255)

         ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg                                          <  1:5227846‑M2/10‑1 (MQ=255)

         ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg                                          <  1:1272026‑M2/10‑1 (MQ=255)

         ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg                                          <  1:2946804‑M2/10‑1 (MQ=255)

         ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg                                          >  1:1365435‑M2/41‑50 (MQ=255)

         ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg                                          >  1:7768489‑M2/41‑50 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc                                         <  1:3812331‑M2/11‑1 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  1:7539109‑M2/38‑50 (MQ=255)

            tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg                                        <  1:6770918‑M2/12‑1 (MQ=255)

             cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  1:6299606‑M2/37‑49 (MQ=255)

             cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  1:5152852‑M2/37‑49 (MQ=255)

             cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       <  1:2699643‑M2/13‑1 (MQ=255)

             cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg                                       >  1:2270297‑M2/37‑49 (MQ=255)

              gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCggg                                      <  1:2251407‑M2/14‑1 (MQ=255)

              gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa                                     <  1:5186906‑M2/15‑1 (MQ=255)

              gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa                                     >  1:956736‑M2/36‑50 (MQ=255)

               ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt                                    <  1:7919807‑M2/16‑1 (MQ=255)

                tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt                                   >  1:6153506‑M2/34‑50 (MQ=255)

                tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt                                   >  1:7070068‑M2/34‑50 (MQ=255)

                tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt                                   >  1:2976115‑M2/34‑50 (MQ=255)

                 acgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc                                  >  1:3664364‑M2/33‑50 (MQ=255)

                  cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc                                  <  1:6906099‑M2/18‑1 (MQ=255)

                  cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCt                                 <  1:3617884‑M2/19‑1 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                >  1:3558073‑M2/31‑50 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                <  1:2566692‑M2/20‑1 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                <  1:4662054‑M2/20‑1 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                >  1:7906039‑M2/31‑50 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                >  1:3936185‑M2/31‑50 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                >  1:3606194‑M2/31‑50 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                >  1:8108855‑M2/31‑50 (MQ=255)

                   gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt                                >  1:8330432‑M2/31‑50 (MQ=255)

                    ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt                               <  1:578730‑M2/21‑1 (MQ=255)

                    ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt                               <  1:821909‑M2/21‑1 (MQ=255)

                    ttgccggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt                               >  1:1276473‑M2/30‑50 (MQ=255)

                     tgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              >  1:3444406‑M2/29‑50 (MQ=255)

                      gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt                             >  1:4643808‑M2/28‑50 (MQ=255)

                      gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              <  1:2678520‑M2/22‑1 (MQ=255)

                      gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              <  1:5759135‑M2/22‑1 (MQ=255)

                      gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              <  1:2234484‑M2/22‑1 (MQ=255)

                      gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt                              <  1:872409‑M2/22‑1 (MQ=255)

                      gctggctcgttttaacacggagaagggCCTACACTAGCGGGATTCtttt                              <  1:4093826‑M2/22‑1 (MQ=255)

                       ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt                             <  1:7677597‑M2/23‑1 (MQ=255)

                       ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt                             <  1:3442780‑M2/23‑1 (MQ=255)

                       ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg                            <  1:2377525‑M2/24‑1 (MQ=255)

                        tggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt                           >  1:8020062‑M2/26‑50 (MQ=255)

                          gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt                          >  1:2139325‑M2/24‑49 (MQ=255)

                          gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt                          >  1:1041138‑M2/24‑49 (MQ=255)

                          gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt                           <  1:1959958‑M2/25‑1 (MQ=255)

                          gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTa                         <  1:2457326‑M2/27‑1 (MQ=255)

                           ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa                        >  1:5349873‑M2/23‑50 (MQ=255)

                           ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa                        <  1:4969114‑M2/28‑1 (MQ=255)

                            tcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAc                       >  1:3855854‑M2/22‑50 (MQ=255)

                            tcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAc                       >  1:7043675‑M2/22‑50 (MQ=255)

                             cgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc                      >  1:1272685‑M2/21‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc                     >  1:6117983‑M2/20‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc                     >  1:3970684‑M2/20‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc                     >  1:5523179‑M2/20‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc                     >  1:6803244‑M2/20‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc                     >  1:5277129‑M2/20‑50 (MQ=255)

                              gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc                      <  1:336771‑M2/30‑1 (MQ=255)

                               ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc                    <  1:755983‑M2/32‑1 (MQ=255)

                               ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc                    <  1:3427811‑M2/32‑1 (MQ=255)

                               ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc                    <  1:7835409‑M2/32‑1 (MQ=255)

                               ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc                    >  1:6967188‑M2/19‑50 (MQ=255)

                                  taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa                  <  1:3215830‑M2/34‑1 (MQ=255)

                                  taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa                  <  1:1419456‑M2/34‑1 (MQ=255)

                                   aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc                >  1:6017482‑M2/15‑50 (MQ=255)

                                   aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc                >  1:1856248‑M2/15‑50 (MQ=255)

                                   aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc                >  1:3579312‑M2/15‑50 (MQ=255)

                                   aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAc                 <  1:5457098‑M2/35‑1 (MQ=255)

                                     cacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAccc               >  1:3698537‑M2/13‑49 (MQ=255)

                                      acggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCa             <  1:6635604‑M2/39‑1 (MQ=255)

                                          agaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg         >  1:1420015‑M2/8‑50 (MQ=255)

                                              gtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACa     <  1:3790771‑M2/47‑1 (MQ=255)

                                                 ccTACGCTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAc   <  1:4169034/49‑1 (MQ=255)

                                                 ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc  <  1:5524220/50‑1 (MQ=255)

                                                 ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc  >  1:2379365/1‑50 (MQ=255)

CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC  >  NC_000913/3091006‑3091104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`