Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 96 [0] | [0] 97 | endA | DNA‑specific endonuclease I |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3090346 | 0 (0.000) | 94 (0.820) | 54/98 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase |
CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC > NC_000913/3091006‑3091104 | ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc < 1:5577497‑M2/1‑1 (MQ=255) caaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:3195022‑M2/49‑50 (MQ=255) aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:8444061‑M2/48‑49 (MQ=255) aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:7885140‑M2/48‑49 (MQ=255) aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:6448168‑M2/48‑49 (MQ=255) aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCt < 1:4542426‑M2/3‑1 (MQ=255) aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa > 1:4407493‑M2/47‑50 (MQ=255) aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa < 1:7730306‑M2/4‑1 (MQ=255) aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa < 1:1850098‑M2/4‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTac < 1:128747‑M2/5‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTac < 1:7090678‑M2/5‑1 (MQ=255) acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca < 1:3061984‑M2/6‑1 (MQ=255) acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca < 1:3005404‑M2/6‑1 (MQ=255) cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac < 1:3504571‑M2/7‑1 (MQ=255) cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:5312770‑M2/44‑50 (MQ=255) cagctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac < 1:2535690‑M2/7‑1 (MQ=255) agctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:3911184‑M2/43‑49 (MQ=255) gctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTa < 1:3031349‑M2/9‑1 (MQ=255) gctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTa < 1:1771960‑M2/9‑1 (MQ=255) gctttcgctacgttgctggctcgttttaacacggagaagtgCCTACAATa < 1:3091266‑M2/9‑1 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg > 1:6814688‑M2/41‑50 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg < 1:5227846‑M2/10‑1 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg < 1:1272026‑M2/10‑1 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg < 1:2946804‑M2/10‑1 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg > 1:1365435‑M2/41‑50 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg > 1:7768489‑M2/41‑50 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc < 1:3812331‑M2/11‑1 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:7539109‑M2/38‑50 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg < 1:6770918‑M2/12‑1 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:6299606‑M2/37‑49 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:5152852‑M2/37‑49 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg < 1:2699643‑M2/13‑1 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:2270297‑M2/37‑49 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCggg < 1:2251407‑M2/14‑1 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa < 1:5186906‑M2/15‑1 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa > 1:956736‑M2/36‑50 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt < 1:7919807‑M2/16‑1 (MQ=255) tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt > 1:6153506‑M2/34‑50 (MQ=255) tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt > 1:7070068‑M2/34‑50 (MQ=255) tacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt > 1:2976115‑M2/34‑50 (MQ=255) acgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc > 1:3664364‑M2/33‑50 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTc < 1:6906099‑M2/18‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCt < 1:3617884‑M2/19‑1 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:3558073‑M2/31‑50 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt < 1:2566692‑M2/20‑1 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt < 1:4662054‑M2/20‑1 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:7906039‑M2/31‑50 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:3936185‑M2/31‑50 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:3606194‑M2/31‑50 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:8108855‑M2/31‑50 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt > 1:8330432‑M2/31‑50 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt < 1:578730‑M2/21‑1 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt < 1:821909‑M2/21‑1 (MQ=255) ttgccggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttt > 1:1276473‑M2/30‑50 (MQ=255) tgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt > 1:3444406‑M2/29‑50 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt > 1:4643808‑M2/28‑50 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt < 1:2678520‑M2/22‑1 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt < 1:5759135‑M2/22‑1 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt < 1:2234484‑M2/22‑1 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt < 1:872409‑M2/22‑1 (MQ=255) gctggctcgttttaacacggagaagggCCTACACTAGCGGGATTCtttt < 1:4093826‑M2/22‑1 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt < 1:7677597‑M2/23‑1 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt < 1:3442780‑M2/23‑1 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg < 1:2377525‑M2/24‑1 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt > 1:8020062‑M2/26‑50 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt > 1:2139325‑M2/24‑49 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt > 1:1041138‑M2/24‑49 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt < 1:1959958‑M2/25‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTa < 1:2457326‑M2/27‑1 (MQ=255) ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa > 1:5349873‑M2/23‑50 (MQ=255) ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa < 1:4969114‑M2/28‑1 (MQ=255) tcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAc > 1:3855854‑M2/22‑50 (MQ=255) tcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAc > 1:7043675‑M2/22‑50 (MQ=255) cgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc > 1:1272685‑M2/21‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:6117983‑M2/20‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:3970684‑M2/20‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:5523179‑M2/20‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:6803244‑M2/20‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:5277129‑M2/20‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc < 1:336771‑M2/30‑1 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:755983‑M2/32‑1 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:3427811‑M2/32‑1 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:7835409‑M2/32‑1 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc > 1:6967188‑M2/19‑50 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa < 1:3215830‑M2/34‑1 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa < 1:1419456‑M2/34‑1 (MQ=255) aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc > 1:6017482‑M2/15‑50 (MQ=255) aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc > 1:1856248‑M2/15‑50 (MQ=255) aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc > 1:3579312‑M2/15‑50 (MQ=255) aacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAc < 1:5457098‑M2/35‑1 (MQ=255) cacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAccc > 1:3698537‑M2/13‑49 (MQ=255) acggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCa < 1:6635604‑M2/39‑1 (MQ=255) agaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg > 1:1420015‑M2/8‑50 (MQ=255) gtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACa < 1:3790771‑M2/47‑1 (MQ=255) ccTACGCTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAc < 1:4169034/49‑1 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc < 1:5524220/50‑1 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc > 1:2379365/1‑50 (MQ=255) | CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC > NC_000913/3091006‑3091104 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |