BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,651,293	Δ2,422 bp		[yhiS]–yhiS	[yhiS], insH‑11, yhiS

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3651293	3653714	2422	140 [0]	[0] 139	[yhiS]–yhiS	[yhiS],insH‑11,yhiS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3651292	0 (0.000)	131 (1.200)	68/94	0.0	100%	pseudogene (2/746 nt)	yhiS	putative uncharacterized protein YhiS
*	?	NC_000913	3653715 =	0 (0.000)	131 (1.200)	68/94	0.0	100%	intergenic (+2/‑246)	yhiS/slp	putative uncharacterized protein YhiS/starvation lipoprotein

Only 100 of 139 total aligned reads displayed.

GTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTA  >  NC_000913/3653667‑3653763

caatttaaacatcttagcataaaacaaatgatgaataaggaattttatat                                                 >  1:1372330‑M2/49‑50 (MQ=255)

caatttaaacatcttagcataaaacaaatgatgaataaggaattttatat                                                 <  1:3925188‑M2/2‑1 (MQ=255)

caatttaaacatcttagcataaaacaaatgatgaataaggaattttatat                                                 >  1:8012860‑M2/49‑50 (MQ=255)

 aatttaaacatcttagcataaaacaaatgatgaataaggaattttatAtt                                                <  1:8131025‑M2/3‑1 (MQ=255)

 aatttaaacatcttagcataaaacaaatgatgaataaggaattttatAtt                                                >  1:4351729‑M2/48‑50 (MQ=255)

 aatttaaacatcttagcataaaacaaatgatgaataaggaattttatAtt                                                >  1:705874‑M2/48‑50 (MQ=255)

 aatttaaacatcttagcataaaacaaatgatgaataaggaattttatAtt                                                >  1:3665394‑M2/48‑50 (MQ=255)

  atttaaacatcttagcataaaacaaatgatgaataaggaattttatAtt                                                >  1:2769268‑M2/47‑49 (MQ=255)

   tttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGa                                              <  1:5984315‑M2/5‑1 (MQ=255)

   tttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGa                                              >  1:7991025‑M2/46‑50 (MQ=255)

   tttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGa                                              <  1:2109158‑M2/5‑1 (MQ=255)

   tttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGa                                              <  1:5708577‑M2/5‑1 (MQ=255)

   tttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGa                                              <  1:2670578‑M2/5‑1 (MQ=255)

    ttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGat                                             >  1:3553878‑M2/45‑50 (MQ=255)

       aacatcttagcataaaacaaatgatgaataaggaattttatATTGattat                                          <  1:4672627‑M2/9‑1 (MQ=255)

       aacatcttagcataaaacaaatgatgaataaggaattttatATTGattat                                          <  1:7810237‑M2/9‑1 (MQ=255)

       aacatcttagcataaaacaaatgatgaataaggaattttatATTGattat                                          <  1:8475699‑M2/9‑1 (MQ=255)

       aacatcttagcataaaacaaatgatgaataaggaattttatATTGatta                                           <  1:3538174‑M2/8‑1 (MQ=255)

        acatcttagcataaaacaaatgatgaataaggaattttatATTGattatt                                         <  1:7260293‑M2/10‑1 (MQ=255)

        acatcttagcataaaacaaatgatgaataaggaattttatATTGattatt                                         <  1:7832329‑M2/10‑1 (MQ=255)

         catcttagcataaaacaaatgatgaataaggaattttatATTGattat                                          >  1:4040643‑M2/40‑48 (MQ=255)

         catcttagcataaaacaaatgatgaataaggaattttatATTGAttatta                                        <  1:2050326‑M2/11‑1 (MQ=255)

          atcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                       <  1:7500952‑M2/12‑1 (MQ=255)

          atcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                       >  1:3021294‑M2/39‑50 (MQ=255)

          atcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                       >  1:7640711‑M2/39‑50 (MQ=255)

          atctgagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                       <  1:5716881‑M2/12‑1 (MQ=255)

           tcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                       >  1:1558108‑M2/38‑49 (MQ=255)

           tcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                       >  1:2331080‑M2/38‑49 (MQ=255)

            cttagcataaaacaaatgatgaataaggaattttatATTGATTATTAGCa                                     >  1:1998801‑M2/37‑50 (MQ=255)

             ttagcataaaacaaatgatgaataaggaattttatATTGATTATTAGCAc                                    >  1:8211396‑M2/36‑50 (MQ=255)

              tagcataaaacaaatgatgaataaggaattttatATTGATTATTAGCACt                                   >  1:3116588‑M2/35‑50 (MQ=255)

               agcataaaacaaatgatgaataaggaattttatATTGATTATTAGCa                                     <  1:2133409‑M2/14‑1 (MQ=255)

               agcataaaacaaatgatgaataaggaattttatATTGATTATTAGCACt                                   <  1:5375566‑M2/16‑1 (MQ=255)

               agcataaaacaaatgatgaataaggaattttatATTGATTATTAGCACt                                   <  1:7718566‑M2/16‑1 (MQ=255)

                gcataaaacaaatgatgaataaggaattttatATTGATTATTAGCACttt                                 <  1:4698833‑M2/18‑1 (MQ=255)

                  ataaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTtat                               <  1:2665553‑M2/20‑1 (MQ=255)

                  ataaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTtat                               <  1:2355039‑M2/20‑1 (MQ=255)

                   taaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTtata                              <  1:2833987‑M2/21‑1 (MQ=255)

                   taaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTtat                               >  1:6439945‑M2/30‑49 (MQ=255)

                    aaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATaa                             >  1:921456‑M2/29‑50 (MQ=255)

                     aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                            <  1:7317376‑M2/23‑1 (MQ=255)

                     aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                            <  1:4149937‑M2/23‑1 (MQ=255)

                     aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                            >  1:909831‑M2/28‑50 (MQ=255)

                     aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                            >  1:1373650‑M2/28‑50 (MQ=255)

                     aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                            <  1:5754453‑M2/23‑1 (MQ=255)

                     aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                            <  1:5159722‑M2/23‑1 (MQ=255)

                     aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                            >  1:5140906‑M2/28‑50 (MQ=255)

                     aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                            >  1:2252704‑M2/28‑50 (MQ=255)

                     aaacaaatgatgaataaggaaatttatATTGATTATTAGCACTTTATaa                             <  1:7469275‑M2/22‑1 (MQ=255)

                      aacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATc                           <  1:7643701‑M2/24‑1 (MQ=255)

                       acaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCa                          >  1:8219283‑M2/26‑50 (MQ=255)

                       acaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCa                          <  1:2980420‑M2/25‑1 (MQ=255)

                        caaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAt                         <  1:3291056‑M2/26‑1 (MQ=255)

                         aaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                        <  1:3715348‑M2/27‑1 (MQ=255)

                         aaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                        <  1:5951925‑M2/27‑1 (MQ=255)

                         aaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                        >  1:8342314‑M2/24‑50 (MQ=255)

                          aatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                        >  1:2433461‑M2/23‑49 (MQ=255)

                          aatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                        >  1:3153389‑M2/23‑49 (MQ=255)

                           atgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGa                      <  1:5345753‑M2/29‑1 (MQ=255)

                            tgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGaa                     <  1:7401516‑M2/30‑1 (MQ=255)

                            tgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGaa                     <  1:5401565‑M2/30‑1 (MQ=255)

                             gatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGaa                     >  1:5894537‑M2/20‑49 (MQ=255)

                             gatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGaa                     >  1:1186656‑M2/20‑49 (MQ=255)

                              atgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAAt                    <  1:7160844‑M2/31‑1 (MQ=255)

                              atgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATa                   <  1:2004147‑M2/32‑1 (MQ=255)

                               tgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaa                  <  1:2296159‑M2/33‑1 (MQ=255)

                               tgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaa                  <  1:7082708‑M2/33‑1 (MQ=255)

                               tgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaa                  <  1:232512‑M2/33‑1 (MQ=255)

                               tgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATa                   >  1:3508864‑M2/18‑49 (MQ=255)

                                 aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaaa                <  1:3016804‑M2/35‑1 (MQ=255)

                                 aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaa                 <  1:5459896‑M2/34‑1 (MQ=255)

                                 aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaa                 >  1:5331004‑M2/16‑49 (MQ=255)

                                   taaggaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAAt              <  1:216822‑M2/37‑1 (MQ=255)

                                   taaggaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAAt              <  1:6675090‑M2/37‑1 (MQ=255)

                                    aaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaaaa               >  1:4280350‑M2/13‑48 (MQ=255)

                                     aggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaaaa               >  1:5410945‑M2/12‑47 (MQ=255)

                                     aggaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATa             <  1:6458219‑M2/38‑1 (MQ=255)

                                     aggaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATa             <  1:8582408‑M2/38‑1 (MQ=255)

                                     aggaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATa             <  1:4427373‑M2/38‑1 (MQ=255)

                                     aggaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAg            <  1:3784093‑M2/39‑1 (MQ=255)

                                      ggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaaaa               >  1:6682490‑M2/11‑46 (MQ=255)

                                       gaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAt          <  1:2229193‑M2/41‑1 (MQ=255)

                                       gaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAt          <  1:1812686‑M2/41‑1 (MQ=255)

                                        aattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtt         <  1:6964903‑M2/42‑1 (MQ=255)

                                        aattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtt         <  1:7526079‑M2/42‑1 (MQ=255)

                                         attttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAttt        <  1:7538943‑M2/43‑1 (MQ=255)

                                         attttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAttt        <  1:1460275‑M2/43‑1 (MQ=255)

                                          ttttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtttt       <  1:7601824‑M2/44‑1 (MQ=255)

                                          ttttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtttt       <  1:1772965‑M2/44‑1 (MQ=255)

                                          ttttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtttt       <  1:5265366‑M2/44‑1 (MQ=255)

                                          ttttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAttt        >  1:5526421‑M2/7‑49 (MQ=255)

                                          ttttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAttt        >  1:6374364‑M2/7‑49 (MQ=255)

                                            ttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTa      <  1:6035261‑M2/45‑1 (MQ=255)

                                            ttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTAt     >  1:3976240‑M2/5‑50 (MQ=255)

                                             tatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg    >  1:2284122‑M2/4‑50 (MQ=255)

                                              atATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg    <  1:1884035‑M2/47‑1 (MQ=255)

                                              atATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg    >  1:6039482‑M2/3‑49 (MQ=255)

                                              atATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg    <  1:3761291‑M2/47‑1 (MQ=255)

                                               tATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTa  <  1:6973100‑M2/49‑1 (MQ=255)

                                               tATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTa  <  1:4489399‑M2/49‑1 (MQ=255)

GTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTA  >  NC_000913/3653667‑3653763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`