BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,651,293	Δ2,422 bp		[yhiS]–yhiS	[yhiS], insH‑11, yhiS

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3651293	3653714	2422	197 [0]	[0] 197	[yhiS]–yhiS	[yhiS],insH‑11,yhiS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3651292	0 (0.000)	189 (1.320)	77/94	0.0	100%	pseudogene (2/746 nt)	yhiS	putative uncharacterized protein YhiS
*	?	NC_000913	3653715 =	0 (0.000)	189 (1.320)	77/94	0.0	100%	intergenic (+2/‑246)	yhiS/slp	putative uncharacterized protein YhiS/starvation lipoprotein

Only 100 of 197 total aligned reads displayed.

CCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT  >  NC_000913/3651244‑3651341

ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa                                                  >  1:2579491‑M1/1‑49 (MQ=255)

 cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat                                                 >  2:4075189‑M1/1‑48 (MQ=255)

 cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat                                                 <  2:3259967‑M1/50‑3 (MQ=255)

 cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat                                                 <  2:229122‑M1/50‑3 (MQ=255)

 cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat                                                 >  2:2195300‑M1/1‑48 (MQ=255)

  aaTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt                                                <  1:424773‑M1/50‑4 (MQ=255)

   aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattg                                               <  1:2279899‑M1/50‑5 (MQ=255)

    tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattga                                              <  1:1191459‑M1/50‑6 (MQ=255)

    tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattga                                              >  2:1150101‑M1/1‑45 (MQ=255)

      tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                             >  1:3584293‑M1/1‑43 (MQ=255)

      tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                             >  1:1444211‑M1/1‑43 (MQ=255)

      tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                             <  2:893634‑M1/49‑7 (MQ=255)

        aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          >  2:2763805‑M1/1‑41 (MQ=255)

        aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          <  2:1093295‑M1/50‑10 (MQ=255)

        aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          <  1:72279‑M1/50‑10 (MQ=255)

        aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta                                           <  1:4776143‑M1/49‑9 (MQ=255)

        aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta                                           <  1:4731355‑M1/49‑9 (MQ=255)

         aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatt                                         <  2:534826‑M1/50‑11 (MQ=255)

         aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatt                                         <  1:4554228‑M1/50‑11 (MQ=255)

         aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatt                                         <  1:1004734‑M1/50‑11 (MQ=255)

         aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatt                                         <  1:2535705‑M1/50‑11 (MQ=255)

         aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          >  2:3067183‑M1/1‑40 (MQ=255)

          cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatta                                        <  2:2498777‑M1/50‑12 (MQ=255)

          cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatta                                        <  2:718064‑M1/50‑12 (MQ=255)

          cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatta                                        <  1:3948478‑M1/50‑12 (MQ=255)

          cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          >  1:2803710‑M1/1‑39 (MQ=255)

           aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                       >  1:4500593‑M1/1‑38 (MQ=255)

           aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                       >  1:2359283‑M1/1‑38 (MQ=255)

             cTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca                                     >  2:4148730‑M1/1‑36 (MQ=255)

              ttAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                    >  1:1637120‑M1/1‑35 (MQ=255)

                aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                  >  1:4984910‑M1/1‑33 (MQ=255)

                aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact                                   <  2:4582751‑M1/49‑17 (MQ=255)

                aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca                                     <  2:2254172‑M1/47‑15 (MQ=255)

                aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca                                     <  2:3713854‑M1/47‑15 (MQ=255)

                aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca                                     <  1:3463468‑M1/47‑15 (MQ=255)

                aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca                                     <  1:1807631‑M1/47‑15 (MQ=255)

                aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagc                                      <  2:3379293‑M1/46‑14 (MQ=255)

                 gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt                                 <  2:4368295‑M1/50‑19 (MQ=255)

                 gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                  >  2:4540380‑M1/1‑32 (MQ=255)

                 gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                  >  2:5115170‑M1/1‑32 (MQ=255)

                 gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                  <  2:836674‑M1/49‑18 (MQ=255)

                 gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                  <  2:1665193‑M1/49‑18 (MQ=255)

                  cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                                <  2:5662910‑M1/50‑20 (MQ=255)

                  cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                                <  2:2445722‑M1/50‑20 (MQ=255)

                   aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat                               <  2:2425711‑M1/50‑21 (MQ=255)

                   aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                                >  1:5230486‑M1/1‑30 (MQ=255)

                    tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat                               >  2:4742782‑M1/1‑29 (MQ=255)

                     aaaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa                             >  2:1036746‑M1/1‑28 (MQ=255)

                     aaaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa                             >  2:318826‑M1/1‑28 (MQ=255)

                     aaaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa                             >  1:3151633‑M1/1‑28 (MQ=255)

                      aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat                            <  2:2858407‑M1/50‑24 (MQ=255)

                      aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa                             <  2:2051102‑M1/49‑23 (MQ=255)

                      aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa                             <  1:1003977‑M1/49‑23 (MQ=255)

                       aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataatc                           <  2:2505401‑M1/50‑25 (MQ=255)

                       aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataatc                           <  2:4499267‑M1/50‑25 (MQ=255)

                        aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                          <  2:2568189‑M1/50‑26 (MQ=255)

                        aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                          <  1:967432‑M1/50‑26 (MQ=255)

                        aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                          >  1:1377462‑M1/1‑25 (MQ=255)

                         cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat                         <  1:870831‑M1/50‑27 (MQ=255)

                         cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat                         <  1:4127753‑M1/50‑27 (MQ=255)

                         cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat                         >  2:4017885‑M1/1‑24 (MQ=255)

                          aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt                        <  1:3852918‑M1/50‑28 (MQ=255)

                           aaTGATGAATAAGGAATTTTATattgattattagcactttataatcattg                       <  2:4879901‑M1/50‑29 (MQ=255)

                           aaTGATGAATAAGGAATTTTATattgattattagcactttataatcattg                       <  1:293259‑M1/50‑29 (MQ=255)

                           aaTCATGAATAAGGAATTTTATattgattattagcactttataatcatt                        >  1:168881‑M1/1‑22 (MQ=255)

                            atgatgAATAAGGAATTTTATattgattattagcactttataatcattga                      <  2:2988436‑M1/50‑30 (MQ=255)

                            atgatgAATAAGGAATTTTATattgattattagcactttataatcattg                       >  1:2593878‑M1/1‑21 (MQ=255)

                             tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                     <  1:3704286‑M1/50‑31 (MQ=255)

                              gatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                     >  2:647384‑M1/1‑19 (MQ=255)

                              gatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                     >  1:2116677‑M1/1‑19 (MQ=255)

                               atgaATAAGGAATTTTATattgattattagcactttataatcattgaata                   <  1:3095548‑M1/50‑33 (MQ=255)

                               atgaATAAGGAATTTTATattgattattagcactttataatcattgaata                   <  1:3414882‑M1/50‑33 (MQ=255)

                               atgaATAAGGAATTTTATattgattattagcactttataatcattgaata                   <  1:1854247‑M1/50‑33 (MQ=255)

                               atgaATAAGGAATTTTATattgattattagcactttataatcattgaata                   <  1:780162‑M1/50‑33 (MQ=255)

                               atgaATAAGGAATTTTATattgattattagcactttataatcattgaat                    <  1:5295742‑M1/49‑32 (MQ=255)

                                tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa                  <  1:5202843‑M1/50‑34 (MQ=255)

                                tgaATAAGGAATTTTATattgattattagcactttataatcattgaata                   >  1:3989125‑M1/1‑17 (MQ=255)

                                 gaATAAGGAATTTTATattgattattagcactttataatcattgaataa                  >  2:5469754‑M1/1‑16 (MQ=255)

                                  aaTAAGGAATTTTATattgattattagcactttataatcattgaataaaa                <  1:4446031‑M1/50‑36 (MQ=255)

                                  aaTAAGGAATTTTATattgattattagcactttataatcattgaataaaa                <  1:5412555‑M1/50‑36 (MQ=255)

                                  aaTAAGGAATTTTATattgattattagcactttataatcattgaataaa                 >  2:1529269‑M1/1‑15 (MQ=255)

                                   aTAAGTAATTTTATattgattattagcactttataatcattgaataaaaa               <  2:4950335‑M1/50‑37 (MQ=255)

                                   aTAAGGAATTTTATattgattattagcactttataatcattgaataaaaa               <  2:5221591‑M1/50‑37 (MQ=255)

                                    tAAGGAATTTTATattgattattagcactttataatcattgaataaaaat              <  2:446265‑M1/50‑38 (MQ=255)

                                      aGGAATTTTATattgattattagcactttataatcattgaataaaaata             <  1:5608098‑M1/49‑39 (MQ=255)

                                      aGGAATTTTATattgattattagcactttataatcattgaataaaaata             <  1:436652‑M1/49‑39 (MQ=255)

                                       ggAATTTTATattgattattagcactttataatcattgaataaaaa               >  2:394230‑M1/1‑10 (MQ=255)

                                        gAATTTTATattgattattagcactttataatcattgaataaaaatagat          >  1:3003267‑M1/1‑9 (MQ=255)

                                        gAATTTTATattgattattagcactttataatcattgaataaaaatagat          <  1:5152735‑M1/50‑42 (MQ=255)

                                         aaTTTTATattgattattagcactttataatcattgaataaaaatagatt         <  2:4774178‑M1/50‑43 (MQ=255)

                                          aTTTTATattgattattagcactttataatcattgaataaaaatagattt        >  1:3810648‑M1/1‑7 (MQ=255)

                                           ttttATattgattattagcactttataatcattgaataaaaatagatttt       <  1:124531‑M1/50‑45 (MQ=255)

                                           ttttATattgattattagcactttataatcattgaataaaaatagattt        >  1:4078359‑M1/1‑6 (MQ=255)

                                           ttttATattgattattagcactttataatcattgaataaaaatagattt        >  1:64109‑M1/1‑6 (MQ=255)

                                            tttATattgattattagcactttataatcattgaataaaaatagatttta      >  1:3788901‑M1/1‑5 (MQ=255)

                                              tatattgattattagcactttataatcattgaataaaaatagattttatg    >  2:2266640‑M1/1‑3 (MQ=255)

                                              tatattgattattagcactttataatcattgaataaaaatagattttat     <  2:126600‑M1/49‑47 (MQ=255)

                                               atattgattattagcactttataatcattgaataaaaatagattttatg    >  1:2183279‑M1/1‑2 (MQ=255)

                                                tattgattattagcactttataatcattgaataaaaatagattttatgta  <  2:1827893‑M1/50‑50 (MQ=255)

                                                tattgattattagcactttataatcattgaataaaaatagattttatgta  <  2:4125360‑M1/50‑50 (MQ=255)

CCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT  >  NC_000913/3651244‑3651341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`