mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,423,287 | 0 | G | C | 38.1% | 31.6 / 11.1 | 22 | intergenic (+93/+136) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| * | NC_000913 | 3,180,341 | 0 | G | T | 34.5% | 110.5 / 27.7 | 58 | G200C (GGT→TGT) | ygiB | DUF1190 domain‑containing protein YgiB |
| * | NC_000913 | 4,610,466 | 0 | T | G | 32.8% | 134.7 / 13.6 | 64 | G351G (GGT→GGG) | prfC | peptide chain release factor RF3 |
| * | NC_000913 | 2,029,274 | 0 | C | T | 28.6% | 104.6 / 18.3 | 56 | K31K (AAG→AAA) | yedI | conserved inner membrane protein YedI |
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.6% | 317.7 / 174.1 | 189 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,223,597 | 0 | C | T | 27.0% | 140.3 / 20.6 | 63 | R11K (AGA→AAA) | iclR | DNA‑binding transcriptional repressor IclR |
| * | NC_000913 | 2,840,640 | 0 | A | G | 26.7% | 140.5 / 16.1 | 60 | I373V (ATT→GTT) | ascF | beta‑glucoside specific PTS enzyme IIBC component |
| * | NC_000913 | 2,892,195 | 0 | A | T | 26.2% | 191.4 / 31.7 | 84 | intergenic (‑297/‑19) | cysJ/queD | sulfite reductase, flavoprotein subunit/6‑carboxy‑5,6,7,8‑tetrahydropterin synthase |
| * | NC_000913 | 1,557,302 | 0 | A | G | 25.0% | 130.1 / 16.8 | 60 | L246P (CTC→CCC) | ddpF | putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF |
| * | NC_000913 | 1,776,250 | 0 | G | T | 24.6% | 199.9 / 14.9 | 65 | V222L (GTG→TTG) | ydiF | putative acetate‑CoA transferase |
| * | NC_000913 | 2,483,264 | 0 | T | A | 24.6% | 157.3 / 18.2 | 61 | I26F (ATT→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 4,457,105 | 0 | A | G | 24.1% | 138.9 / 15.0 | 58 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 898,598 | 0 | T | A | 23.8% | 100.9 / 13.7 | 42 | A27A (GCT→GCA) | rlmC | 23S rRNA m(5)U747 methyltransferase |
| * | NC_000913 | 1,825,061 | 0 | G | A | 23.8% | 158.2 / 26.2 | 63 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 4,070,462 | 0 | T | C | 23.8% | 127.7 / 42.0 | 63 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 2,483,268 | 0 | T | A | 22.9% | 152.5 / 18.3 | 61 | L24F (TTA→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 4,257,698 | 0 | T | G | 22.7% | 223.5 / 17.6 | 88 | V195G (GTT→GGT) | lexA | DNA‑binding transcriptional repressor LexA |
| * | NC_000913 | 243,709 | 0 | A | C | 22.6% | 126.6 / 12.5 | 62 | H56P (CAT→CCT) | lpcA | D‑sedoheptulose 7‑phosphate isomerase |
| * | NC_000913 | 657,900 | 0 | A | C | 22.2% | 121.5 / 12.2 | 55 | G13G (GGT→GGG) | crcB | F(‑) channel |
| * | NC_000913 | 4,161,142 | 0 | C | A | 22.2% | 159.0 / 13.8 | 54 | Q26K (CAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 5 (0.060) | 3/94 | 10.3 | 100% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 388649 = | 0 (0.000) | intergenic (+3/+104) | tauD/hemB | taurine dioxygenase/porphobilinogen synthase | |||||