Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 116 [0] | [0] 116 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 2286400 | 0 (0.000) | 116 (1.190) | 63/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP |
Only 100 of 116 total aligned reads displayed.
CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCATT > NC_000913/2286352‑2286449 | cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCATACCGTCCt > 1:246558‑M1/1‑49 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:532058‑M1/1‑49 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:4188889‑M1/1‑49 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:1955478‑M1/50‑2 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:6829724‑M1/1‑48 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:6538725‑M1/1‑48 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:2598912‑M1/1‑48 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:6718362‑M1/1‑47 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag < 1:7108080‑M1/50‑5 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag > 1:5214321‑M1/1‑46 (MQ=255) ccGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagc < 1:6350430‑M1/50‑6 (MQ=255) cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct > 1:5851855‑M1/1‑44 (MQ=255) cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct > 1:3006333‑M1/1‑44 (MQ=255) cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct > 1:2150042‑M1/1‑44 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt > 1:1211281‑M1/1‑43 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt < 1:1025452‑M1/50‑8 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:5629582‑M1/50‑9 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca > 1:6402276‑M1/1‑40 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca > 1:362429‑M1/1‑40 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca < 1:7285249‑M1/50‑11 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc < 1:3973490‑M1/49‑10 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc < 1:3843793‑M1/49‑10 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat > 1:741197‑M1/1‑39 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:3317558‑M1/1‑37 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct < 1:2624303‑M1/50‑15 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct < 1:1591094‑M1/50‑15 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct < 1:84963‑M1/50‑15 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct < 1:3180432‑M1/50‑15 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:650533‑M1/1‑36 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:778984‑M1/1‑36 (MQ=255) aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:3151394‑M1/1‑36 (MQ=255) tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta < 1:1949316‑M1/50‑16 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 1:3910740‑M1/1‑33 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat < 1:259031‑M1/49‑17 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg > 1:5532769‑M1/1‑32 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg > 1:7040817‑M1/1‑32 (MQ=255) caGCCGGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg > 1:3012505‑M1/1‑32 (MQ=255) aGCCTGTTTTTTTTCTGTTATCACAACGTCCtgagctttcatcctttgaa < 1:5069096‑M1/50‑20 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaa < 1:65827‑M1/50‑20 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga > 1:2102302‑M1/1‑31 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa > 1:4514807‑M1/1‑30 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa < 1:5662762‑M1/50‑21 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa > 1:2593368‑M1/1‑30 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa > 1:6347274‑M1/1‑30 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa > 1:6486384‑M1/1‑30 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:3470781‑M1/1‑29 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:3986627‑M1/1‑29 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:4075686‑M1/1‑28 (MQ=255) gTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa > 1:1950543‑M1/1‑26 (MQ=255) gTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa > 1:591372‑M1/1‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaat < 1:631076‑M1/50‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatta < 1:1562275‑M1/48‑24 (MQ=255) ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt > 1:4702056‑M1/1‑24 (MQ=255) ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt > 1:2911706‑M1/1‑24 (MQ=255) ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt > 1:2905068‑M1/1‑24 (MQ=255) tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt < 1:5348496‑M1/49‑27 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattg < 1:6536483‑M1/49‑28 (MQ=255) ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgct < 1:6399356‑M1/50‑30 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt > 1:1880291‑M1/1‑19 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg < 1:2409199‑M1/49‑31 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt < 1:5833140‑M1/49‑32 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt < 1:3228369‑M1/49‑32 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt > 1:5460314‑M1/1‑17 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt < 1:3286396‑M1/49‑33 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt > 1:6043083‑M1/1‑17 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:5771118‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:6995750‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:2614379‑M1/1‑14 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:2440152‑M1/1‑14 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:3601255‑M1/1‑14 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta < 1:5450901‑M1/47‑34 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta < 1:3023950‑M1/47‑34 (MQ=255) tATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:363504‑M1/1‑13 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:4788650‑M1/1‑12 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:4345223‑M1/1‑12 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:6985871‑M1/1‑12 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:3502270‑M1/1‑12 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:293018‑M1/1‑12 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca > 1:683834‑M1/1‑11 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca < 1:2458790‑M1/50‑40 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca > 1:2664722‑M1/1‑11 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca < 1:427611‑M1/50‑40 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc < 1:5930679‑M1/49‑39 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc < 1:7375081‑M1/49‑39 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc < 1:6854864‑M1/49‑39 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 1:4301232‑M1/1‑10 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:392057‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:2103718‑M1/1‑9 (MQ=255) gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg > 1:3016246‑M1/1‑8 (MQ=255) gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg > 1:785738‑M1/1‑8 (MQ=255) cacGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg > 1:7027926‑M1/2‑7 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg < 1:1764944‑M1/50‑44 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg > 1:1637344‑M1/1‑7 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttacaagcattggg > 1:2498545‑M1/1‑6 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg < 1:3667566‑M1/50‑45 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg < 1:1938587‑M1/50‑45 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:3607288‑M1/1‑5 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggtac < 1:4963735‑M1/50‑48 (MQ=255) cctgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:4843569‑M1/1‑2 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggtacag < 1:4903754‑M1/50‑50 (MQ=255) | CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCATT > NC_000913/2286352‑2286449 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |