BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,286,401	Δ3,780 bp		[yejO]–[yejO]	[yejO], insH‑8, [yejO]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2286401	2290180	3780	116 [0]	[0] 116	[yejO]–[yejO]	[yejO],insH‑8,[yejO]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2286400	0 (0.000)	116 (1.190)	63/98	0.0	100%	pseudogene (2515/2525 nt)	yejO	adhesin‑like autotransporter YejO
*	?	NC_000913	2290181 =	0 (0.000)	116 (1.190)	63/98	0.0	100%	intergenic (‑1/‑319)	yejO/narP	adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP

Only 100 of 116 total aligned reads displayed.

CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCATT  >  NC_000913/2286352‑2286449

cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCATACCGTCCt                                                  >  1:246558‑M1/1‑49 (MQ=255)

cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                  >  1:532058‑M1/1‑49 (MQ=255)

cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                  >  1:4188889‑M1/1‑49 (MQ=255)

cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                  <  1:1955478‑M1/50‑2 (MQ=255)

 aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                  >  1:6829724‑M1/1‑48 (MQ=255)

 aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                  >  1:6538725‑M1/1‑48 (MQ=255)

 aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                  >  1:2598912‑M1/1‑48 (MQ=255)

  gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                  >  1:6718362‑M1/1‑47 (MQ=255)

   aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag                                               <  1:7108080‑M1/50‑5 (MQ=255)

   aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag                                               >  1:5214321‑M1/1‑46 (MQ=255)

    ccGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagc                                              <  1:6350430‑M1/50‑6 (MQ=255)

     cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct                                             >  1:5851855‑M1/1‑44 (MQ=255)

     cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct                                             >  1:3006333‑M1/1‑44 (MQ=255)

     cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct                                             >  1:2150042‑M1/1‑44 (MQ=255)

      gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt                                            >  1:1211281‑M1/1‑43 (MQ=255)

      gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt                                            <  1:1025452‑M1/50‑8 (MQ=255)

       tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt                                           <  1:5629582‑M1/50‑9 (MQ=255)

         acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca                                         >  1:6402276‑M1/1‑40 (MQ=255)

         acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca                                         >  1:362429‑M1/1‑40 (MQ=255)

         acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca                                         <  1:7285249‑M1/50‑11 (MQ=255)

         acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc                                          <  1:3973490‑M1/49‑10 (MQ=255)

         acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc                                          <  1:3843793‑M1/49‑10 (MQ=255)

          cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat                                        >  1:741197‑M1/1‑39 (MQ=255)

            caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc                                      >  1:3317558‑M1/1‑37 (MQ=255)

             aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct                                     <  1:2624303‑M1/50‑15 (MQ=255)

             aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct                                     <  1:1591094‑M1/50‑15 (MQ=255)

             aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct                                     <  1:84963‑M1/50‑15 (MQ=255)

             aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct                                     <  1:3180432‑M1/50‑15 (MQ=255)

             aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc                                      >  1:650533‑M1/1‑36 (MQ=255)

             aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc                                      >  1:778984‑M1/1‑36 (MQ=255)

             aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc                                      >  1:3151394‑M1/1‑36 (MQ=255)

              tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta                                    <  1:1949316‑M1/50‑16 (MQ=255)

                acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat                                   >  1:3910740‑M1/1‑33 (MQ=255)

                acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat                                   <  1:259031‑M1/49‑17 (MQ=255)

                 caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg                                  >  1:5532769‑M1/1‑32 (MQ=255)

                 caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg                                  >  1:7040817‑M1/1‑32 (MQ=255)

                 caGCCGGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg                                  >  1:3012505‑M1/1‑32 (MQ=255)

                  aGCCTGTTTTTTTTCTGTTATCACAACGTCCtgagctttcatcctttgaa                                <  1:5069096‑M1/50‑20 (MQ=255)

                  aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaa                                <  1:65827‑M1/50‑20 (MQ=255)

                  aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga                                 >  1:2102302‑M1/1‑31 (MQ=255)

                   gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa                               >  1:4514807‑M1/1‑30 (MQ=255)

                   gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa                               <  1:5662762‑M1/50‑21 (MQ=255)

                   gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa                               >  1:2593368‑M1/1‑30 (MQ=255)

                   gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa                               >  1:6347274‑M1/1‑30 (MQ=255)

                   gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa                               >  1:6486384‑M1/1‑30 (MQ=255)

                    ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat                              >  1:3470781‑M1/1‑29 (MQ=255)

                    ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat                              >  1:3986627‑M1/1‑29 (MQ=255)

                     cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat                              >  1:4075686‑M1/1‑28 (MQ=255)

                       gTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa                           >  1:1950543‑M1/1‑26 (MQ=255)

                       gTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa                           >  1:591372‑M1/1‑26 (MQ=255)

                        tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaat                          <  1:631076‑M1/50‑26 (MQ=255)

                        tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatta                            <  1:1562275‑M1/48‑24 (MQ=255)

                         ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt                         >  1:4702056‑M1/1‑24 (MQ=255)

                         ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt                         >  1:2911706‑M1/1‑24 (MQ=255)

                         ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt                         >  1:2905068‑M1/1‑24 (MQ=255)

                          tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt                         <  1:5348496‑M1/49‑27 (MQ=255)

                           aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattg                        <  1:6536483‑M1/49‑28 (MQ=255)

                            ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgct                      <  1:6399356‑M1/50‑30 (MQ=255)

                              ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt                    >  1:1880291‑M1/1‑19 (MQ=255)

                              ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg                     <  1:2409199‑M1/49‑31 (MQ=255)

                               tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt                    <  1:5833140‑M1/49‑32 (MQ=255)

                               tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt                    <  1:3228369‑M1/49‑32 (MQ=255)

                                cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt                   >  1:5460314‑M1/1‑17 (MQ=255)

                                cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt                   <  1:3286396‑M1/49‑33 (MQ=255)

                                cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt                   >  1:6043083‑M1/1‑17 (MQ=255)

                                   ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa               <  1:5771118‑M1/50‑37 (MQ=255)

                                   ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa               <  1:6995750‑M1/50‑37 (MQ=255)

                                   ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa                 >  1:2614379‑M1/1‑14 (MQ=255)

                                   ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa                 >  1:2440152‑M1/1‑14 (MQ=255)

                                   ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa                 >  1:3601255‑M1/1‑14 (MQ=255)

                                   ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta                  <  1:5450901‑M1/47‑34 (MQ=255)

                                   ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta                  <  1:3023950‑M1/47‑34 (MQ=255)

                                    tATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag              >  1:363504‑M1/1‑13 (MQ=255)

                                     aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag              >  1:4788650‑M1/1‑12 (MQ=255)

                                     aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag              >  1:4345223‑M1/1‑12 (MQ=255)

                                     aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag              >  1:6985871‑M1/1‑12 (MQ=255)

                                     aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag              >  1:3502270‑M1/1‑12 (MQ=255)

                                     aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag              >  1:293018‑M1/1‑12 (MQ=255)

                                      tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca            >  1:683834‑M1/1‑11 (MQ=255)

                                      tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca            <  1:2458790‑M1/50‑40 (MQ=255)

                                      tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca            >  1:2664722‑M1/1‑11 (MQ=255)

                                      tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagca            <  1:427611‑M1/50‑40 (MQ=255)

                                      tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc             <  1:5930679‑M1/49‑39 (MQ=255)

                                      tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc             <  1:7375081‑M1/49‑39 (MQ=255)

                                      tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc             <  1:6854864‑M1/49‑39 (MQ=255)

                                       cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat           >  1:4301232‑M1/1‑10 (MQ=255)

                                        aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt          <  1:392057‑M1/50‑42 (MQ=255)

                                        aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt          >  1:2103718‑M1/1‑9 (MQ=255)

                                         gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg         >  1:3016246‑M1/1‑8 (MQ=255)

                                         gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg         >  1:785738‑M1/1‑8 (MQ=255)

                                          cacGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg        >  1:7027926‑M1/2‑7 (MQ=255)

                                          aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg        <  1:1764944‑M1/50‑44 (MQ=255)

                                          aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg        >  1:1637344‑M1/1‑7 (MQ=255)

                                           aCGTCCtgagctttcatcctatgaaattaattgctgttacaagcattggg       >  1:2498545‑M1/1‑6 (MQ=255)

                                           aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg       <  1:3667566‑M1/50‑45 (MQ=255)

                                           aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg       <  1:1938587‑M1/50‑45 (MQ=255)

                                            cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg       >  1:3607288‑M1/1‑5 (MQ=255)

                                              tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggtac    <  1:4963735‑M1/50‑48 (MQ=255)

                                               cctgagctttcatcctatgaaattaattgctgttaaaagcattgggta     >  1:4843569‑M1/1‑2 (MQ=255)

                                                ctgagctttcatcctatgaaattaattgctgttaaaagcattgggtacag  <  1:4903754‑M1/50‑50 (MQ=255)

CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCATT  >  NC_000913/2286352‑2286449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`