BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,286,401	Δ3,780 bp		[yejO]–[yejO]	[yejO], insH‑8, [yejO]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2286401	2290180	3780	116 [0]	[0] 116	[yejO]–[yejO]	[yejO],insH‑8,[yejO]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2286400	0 (0.000)	116 (1.190)	63/98	0.0	100%	pseudogene (2515/2525 nt)	yejO	adhesin‑like autotransporter YejO
*	?	NC_000913	2290181 =	0 (0.000)	116 (1.190)	63/98	0.0	100%	intergenic (‑1/‑319)	yejO/narP	adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP

Only 100 of 116 total aligned reads displayed.

GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG  >  NC_000913/2290132‑2290229

cagaccgtgacacatcacagcctgtttattttctgttatcataccgtcct                                                  >  1:246558‑M2/50‑50 (MQ=255)

cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:532058‑M2/50‑50 (MQ=255)

cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:4188889‑M2/50‑50 (MQ=255)

cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  <  1:1955478‑M2/1‑1 (MQ=255)

 agaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:6829724‑M2/49‑49 (MQ=255)

 agaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:6538725‑M2/49‑49 (MQ=255)

 agaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:2598912‑M2/49‑49 (MQ=255)

  gaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:6718362‑M2/48‑48 (MQ=255)

   accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg                                               <  1:7108080‑M2/4‑1 (MQ=255)

   accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg                                               >  1:5214321‑M2/47‑50 (MQ=255)

    ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc                                              <  1:6350430‑M2/5‑1 (MQ=255)

     cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt                                             >  1:5851855‑M2/45‑50 (MQ=255)

     cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt                                             >  1:3006333‑M2/45‑50 (MQ=255)

     cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt                                             >  1:2150042‑M2/45‑50 (MQ=255)

      gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt                                            >  1:1211281‑M2/44‑50 (MQ=255)

      gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt                                            <  1:1025452‑M2/7‑1 (MQ=255)

       tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt                                           <  1:5629582‑M2/8‑1 (MQ=255)

         acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTc                                          <  1:3973490‑M2/9‑1 (MQ=255)

         acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTc                                          <  1:3843793‑M2/9‑1 (MQ=255)

         acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCa                                         >  1:362429‑M2/41‑50 (MQ=255)

         acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCa                                         <  1:7285249‑M2/10‑1 (MQ=255)

         acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCa                                         >  1:6402276‑M2/41‑50 (MQ=255)

          cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt                                        >  1:741197‑M2/40‑50 (MQ=255)

            catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc                                      >  1:3317558‑M2/38‑50 (MQ=255)

             atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc                                      >  1:650533‑M2/37‑49 (MQ=255)

             atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc                                      >  1:3151394‑M2/37‑49 (MQ=255)

             atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc                                      >  1:778984‑M2/37‑49 (MQ=255)

             atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCt                                     <  1:1591094‑M2/14‑1 (MQ=255)

             atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCt                                     <  1:3180432‑M2/14‑1 (MQ=255)

             atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCt                                     <  1:84963‑M2/14‑1 (MQ=255)

             atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCt                                     <  1:2624303‑M2/14‑1 (MQ=255)

              tcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTa                                    <  1:1949316‑M2/15‑1 (MQ=255)

                acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt                                   >  1:3910740‑M2/34‑49 (MQ=255)

                acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt                                   <  1:259031‑M2/16‑1 (MQ=255)

                 cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg                                  >  1:7040817‑M2/33‑49 (MQ=255)

                 cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg                                  >  1:5532769‑M2/33‑49 (MQ=255)

                 cagccggtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg                                  >  1:3012505‑M2/33‑49 (MQ=255)

                  agcctgttttttttctgttatcacaacgtccTGAGCTTTCATCCTTTGaa                                <  1:5069096‑M2/19‑1 (MQ=255)

                  agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaa                                <  1:65827‑M2/19‑1 (MQ=255)

                  agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa                                 >  1:2102302‑M2/32‑49 (MQ=255)

                   gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa                               >  1:2593368‑M2/31‑50 (MQ=255)

                   gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa                               <  1:5662762‑M2/20‑1 (MQ=255)

                   gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa                               >  1:4514807‑M2/31‑50 (MQ=255)

                   gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa                               >  1:6486384‑M2/31‑50 (MQ=255)

                   gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa                               >  1:6347274‑M2/31‑50 (MQ=255)

                    cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat                              >  1:3986627‑M2/30‑50 (MQ=255)

                    cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat                              >  1:3470781‑M2/30‑50 (MQ=255)

                     ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat                              >  1:4075686‑M2/29‑49 (MQ=255)

                       gtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaa                           >  1:1950543‑M2/27‑50 (MQ=255)

                       gtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaa                           >  1:591372‑M2/27‑50 (MQ=255)

                        tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat                          <  1:631076‑M2/25‑1 (MQ=255)

                        tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatta                            <  1:1562275‑M2/23‑1 (MQ=255)

                         ttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt                         >  1:2905068‑M2/25‑50 (MQ=255)

                         ttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt                         >  1:2911706‑M2/25‑50 (MQ=255)

                         ttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt                         >  1:4702056‑M2/25‑50 (MQ=255)

                          tattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt                         <  1:5348496‑M2/26‑1 (MQ=255)

                           attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTg                        <  1:6536483‑M2/27‑1 (MQ=255)

                            ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCt                      <  1:6399356‑M2/29‑1 (MQ=255)

                              ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg                     <  1:2409199‑M2/30‑1 (MQ=255)

                              ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt                    >  1:1880291‑M2/20‑50 (MQ=255)

                               tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt                    <  1:3228369‑M2/31‑1 (MQ=255)

                               tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt                    <  1:5833140‑M2/31‑1 (MQ=255)

                                ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt                   >  1:6043083‑M2/18‑49 (MQ=255)

                                ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt                   >  1:5460314‑M2/18‑49 (MQ=255)

                                ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt                   <  1:3286396‑M2/32‑1 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa               <  1:6995750‑M2/36‑1 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa               <  1:5771118‑M2/36‑1 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                 >  1:2440152‑M2/15‑48 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                 >  1:2614379‑M2/15‑48 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                 >  1:3601255‑M2/15‑48 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa                  <  1:5450901‑M2/33‑1 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa                  <  1:3023950‑M2/33‑1 (MQ=255)

                                    tatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              >  1:363504‑M2/14‑50 (MQ=255)

                                     atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              >  1:3502270‑M2/13‑49 (MQ=255)

                                     atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              >  1:6985871‑M2/13‑49 (MQ=255)

                                     atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              >  1:293018‑M2/13‑49 (MQ=255)

                                     atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              >  1:4345223‑M2/13‑49 (MQ=255)

                                     atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              >  1:4788650‑M2/13‑49 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc             <  1:5930679‑M2/38‑1 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc             <  1:7375081‑M2/38‑1 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc             <  1:6854864‑M2/38‑1 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa            <  1:2458790‑M2/39‑1 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa            >  1:683834‑M2/12‑50 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa            >  1:2664722‑M2/12‑50 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa            <  1:427611‑M2/39‑1 (MQ=255)

                                       cagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt           >  1:4301232‑M2/11‑50 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          >  1:2103718‑M2/10‑50 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          <  1:392057‑M2/41‑1 (MQ=255)

                                         gaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg         >  1:785738‑M2/9‑50 (MQ=255)

                                         gaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg         >  1:3016246‑M2/9‑50 (MQ=255)

                                          cacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg        >  1:7027926‑M2/8‑50 (MQ=255)

                                          aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg        <  1:1764944‑M2/43‑1 (MQ=255)

                                          aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg        >  1:1637344‑M2/8‑50 (MQ=255)

                                           acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTACAAGCATTggg       >  1:2498545‑M2/7‑50 (MQ=255)

                                           acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       <  1:3667566‑M2/44‑1 (MQ=255)

                                           acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       <  1:1938587‑M2/44‑1 (MQ=255)

                                            cgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       >  1:3607288‑M2/6‑49 (MQ=255)

                                              tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAc    <  1:4963735‑M2/47‑1 (MQ=255)

                                               ccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa     >  1:4843569‑M2/3‑48 (MQ=255)

                                                cTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg  <  1:4903754‑M2/49‑1 (MQ=255)

GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG  >  NC_000913/2290132‑2290229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`