Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 100 [0] | [0] 97 | endA | DNA‑specific endonuclease I |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3090346 | 0 (0.000) | 97 (0.990) | 48/98 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase |
ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCAT > NC_000913/3090296‑3090392 | aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:2221779/1‑50 (MQ=255) aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:2644222/1‑50 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACATGGAG‑AAGTGc > 1:3657674‑M1/1‑49 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg < 1:5628364/49‑1 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc > 1:534567‑M1/1‑49 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc < 1:5708920‑M1/50‑3 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc < 1:1995103‑M1/50‑3 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:7078249‑M1/1‑48 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:4601650‑M1/1‑48 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:6955186‑M1/1‑47 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:1717056‑M1/1‑47 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:2658240‑M1/1‑47 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:5985780‑M1/50‑5 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:1908408‑M1/50‑5 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:2190082‑M1/1‑46 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccca > 1:6682756‑M1/1‑46 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:6751979‑M1/50‑6 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:2174946‑M1/50‑6 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:1657817‑M1/50‑6 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:307016‑M1/1‑45 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:1297058‑M1/1‑45 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:6648843‑M1/1‑45 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:6506845‑M1/50‑7 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:873051‑M1/50‑9 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:5746464‑M1/50‑10 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:2939587‑M1/50‑10 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 1:5209711‑M1/50‑10 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:6018553‑M1/1‑41 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:4286275‑M1/1‑41 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:4142898‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:5167678‑M1/50‑11 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:6927531‑M1/1‑39 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:5993671‑M1/1‑39 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:7117734‑M1/1‑39 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:3016553‑M1/1‑39 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:3085113‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:5116068‑M1/48‑12 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:1457946‑M1/48‑12 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:2953165‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:4693007‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:101731‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:4504376‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:5428852‑M1/1‑35 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGA‑AAAGTGcctacactagcgggat > 1:7156266‑M1/1‑34 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:6138998‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:216546‑M1/1‑33 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 1:1306482‑M1/1‑32 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:4130110‑M1/48‑18 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:2961248‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:989875‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:7379645‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:242048‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:5658706‑M1/50‑21 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:6277384‑M1/1‑30 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:5938981‑M1/1‑30 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:549802‑M1/1‑28 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:1012114‑M1/1‑28 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:250266‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGCGcctacactagcgggattcttttt > 1:2437684‑M1/1‑27 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:1434798‑M1/49‑24 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:2275573‑M1/49‑24 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggcttctttttgt > 1:2560353‑M1/1‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:5332134‑M1/1‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:5695726‑M1/1‑25 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:563245‑M1/1‑24 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:732560‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:1949240‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:3130959‑M1/1‑23 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt < 1:4279685‑M1/48‑26 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt < 1:6160948‑M1/48‑26 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt < 1:5504148‑M1/48‑26 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa > 1:2344210‑M1/1‑22 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:6937670‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:122598‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:1005588‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc < 1:5267167‑M1/50‑32 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:393330‑M1/1‑19 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:4984297‑M1/1‑18 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:2617404‑M1/1‑18 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:3348852‑M1/50‑33 (MQ=255) tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:286698‑M1/1‑17 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta > 1:6085937‑M1/1‑16 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta > 1:534798‑M1/1‑16 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta > 1:5400924‑M1/1‑16 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:2767759‑M1/49‑34 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc > 1:226356‑M1/1‑14 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac < 1:4080011‑M1/49‑36 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac < 1:2799960‑M1/49‑36 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:767281‑M1/49‑37 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:5237009‑M1/49‑37 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:1525028‑M1/50‑39 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca < 1:5777585‑M1/50‑40 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:5850096‑M1/3‑7 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:2154640‑M1/3‑7 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:1252307‑M1/3‑7 (MQ=255) gaagTGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:3233402‑M1/2‑6 (MQ=255) aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta > 1:1602731‑M1/1‑5 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:2923887‑M1/50‑47 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:1679801‑M1/50‑47 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgta > 1:6135551‑M1/1‑4 (MQ=255) | ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCAT > NC_000913/3090296‑3090392 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |