BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,090,347	Δ708 bp	coding (1‑708/708 nt)	endA →	DNA‑specific endonuclease I

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3090347	3091054	708	100 [0]	[0] 97	endA	DNA‑specific endonuclease I

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3090346	0 (0.000)	97 (0.990)	48/98	0.1	100%	intergenic (+94/‑1)	yggI/endA	conserved protein YggI/DNA‑specific endonuclease I
*	?	NC_000913	3091055 =	0 (0.000)	97 (0.990)	48/98	0.1	100%	intergenic (+1/‑79)	endA/rsmE	DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCAT  >  NC_000913/3090296‑3090392

aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                >  1:2221779/1‑50 (MQ=255)

aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                >  1:2644222/1‑50 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACATGGAG‑AAGTGc                                               >  1:3657674‑M1/1‑49 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                <  1:5628364/49‑1 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc                                               >  1:534567‑M1/1‑49 (MQ=255)

  cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                              <  1:5708920‑M1/50‑3 (MQ=255)

  cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                              <  1:1995103‑M1/50‑3 (MQ=255)

  cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                              >  1:7078249‑M1/1‑48 (MQ=255)

  cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                              >  1:4601650‑M1/1‑48 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                              >  1:6955186‑M1/1‑47 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                              >  1:1717056‑M1/1‑47 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                              >  1:2658240‑M1/1‑47 (MQ=255)

    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                            <  1:5985780‑M1/50‑5 (MQ=255)

    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                            <  1:1908408‑M1/50‑5 (MQ=255)

    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                            >  1:2190082‑M1/1‑46 (MQ=255)

    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccca                                            >  1:6682756‑M1/1‑46 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                           <  1:6751979‑M1/50‑6 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                           <  1:2174946‑M1/50‑6 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                           <  1:1657817‑M1/50‑6 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                            >  1:307016‑M1/1‑45 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                            >  1:1297058‑M1/1‑45 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                            >  1:6648843‑M1/1‑45 (MQ=255)

      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                          <  1:6506845‑M1/50‑7 (MQ=255)

        aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact                                        <  1:873051‑M1/50‑9 (MQ=255)

         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta                                       <  1:5746464‑M1/50‑10 (MQ=255)

         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta                                       <  1:2939587‑M1/50‑10 (MQ=255)

         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta                                       <  1:5209711‑M1/50‑10 (MQ=255)

         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                         >  1:6018553‑M1/1‑41 (MQ=255)

         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                         >  1:4286275‑M1/1‑41 (MQ=255)

          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                                      <  1:4142898‑M1/50‑11 (MQ=255)

          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                                      <  1:5167678‑M1/50‑11 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                     >  1:6927531‑M1/1‑39 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                     >  1:5993671‑M1/1‑39 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                     >  1:7117734‑M1/1‑39 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                     >  1:3016553‑M1/1‑39 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                                    <  1:3085113‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                     <  1:5116068‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                     <  1:1457946‑M1/48‑12 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                 >  1:2953165‑M1/1‑35 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                 >  1:4693007‑M1/1‑35 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                 >  1:101731‑M1/1‑35 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                 >  1:4504376‑M1/1‑35 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                 >  1:5428852‑M1/1‑35 (MQ=255)

                cTACGTTGCTGGCTCGTTTTAACACGGA‑AAAGTGcctacactagcgggat                                >  1:7156266‑M1/1‑34 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                               >  1:6138998‑M1/1‑33 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                               >  1:216546‑M1/1‑33 (MQ=255)

                  aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc                              >  1:1306482‑M1/1‑32 (MQ=255)

                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                               <  1:4130110‑M1/48‑18 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                            <  1:2961248‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                            <  1:989875‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                            <  1:7379645‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                            <  1:242048‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                            <  1:5658706‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                            >  1:6277384‑M1/1‑30 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                            >  1:5938981‑M1/1‑30 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                          >  1:549802‑M1/1‑28 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                          >  1:1012114‑M1/1‑28 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                          <  1:250266‑M1/49‑23 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGCGcctacactagcgggattcttttt                         >  1:2437684‑M1/1‑27 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                         <  1:1434798‑M1/49‑24 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                         <  1:2275573‑M1/49‑24 (MQ=255)

                         tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggcttctttttgt                       >  1:2560353‑M1/1‑25 (MQ=255)

                         tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                       >  1:5332134‑M1/1‑25 (MQ=255)

                         tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                       >  1:5695726‑M1/1‑25 (MQ=255)

                          ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                       >  1:563245‑M1/1‑24 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt                      <  1:732560‑M1/49‑27 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt                      <  1:1949240‑M1/49‑27 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt                      >  1:3130959‑M1/1‑23 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                       <  1:4279685‑M1/48‑26 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                       <  1:6160948‑M1/48‑26 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                       <  1:5504148‑M1/48‑26 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa                    >  1:2344210‑M1/1‑22 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc                 >  1:6937670‑M1/1‑19 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc                 >  1:122598‑M1/1‑19 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc                 >  1:1005588‑M1/1‑19 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc                 <  1:5267167‑M1/50‑32 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc                 >  1:393330‑M1/1‑19 (MQ=255)

                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc                >  1:4984297‑M1/1‑18 (MQ=255)

                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc                >  1:2617404‑M1/1‑18 (MQ=255)

                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc                <  1:3348852‑M1/50‑33 (MQ=255)

                                 tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc                >  1:286698‑M1/1‑17 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta              >  1:6085937‑M1/1‑16 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta              >  1:534798‑M1/1‑16 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta              >  1:5400924‑M1/1‑16 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct               <  1:2767759‑M1/49‑34 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc            >  1:226356‑M1/1‑14 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac             <  1:4080011‑M1/49‑36 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac             <  1:2799960‑M1/49‑36 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc            <  1:767281‑M1/49‑37 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc            <  1:5237009‑M1/49‑37 (MQ=255)

                                      cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc          <  1:1525028‑M1/50‑39 (MQ=255)

                                       acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca         <  1:5777585‑M1/50‑40 (MQ=255)

                                            agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg     >  1:5850096‑M1/3‑7 (MQ=255)

                                            agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg     >  1:2154640‑M1/3‑7 (MQ=255)

                                            agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg     >  1:1252307‑M1/3‑7 (MQ=255)

                                             gaagTGcctacactagcgggattctttttgttaacccctaccccacgcg     >  1:3233402‑M1/2‑6 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta   >  1:1602731‑M1/1‑5 (MQ=255)

                                               aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac  <  1:2923887‑M1/50‑47 (MQ=255)

                                               aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac  <  1:1679801‑M1/50‑47 (MQ=255)

                                               aGTGcctacactagcgggattctttttgttaacccctaccccacgcgta   >  1:6135551‑M1/1‑4 (MQ=255)

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCAT  >  NC_000913/3090296‑3090392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`