mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,361,533 | 0 | A | T | 24.0% | 137.9 / 20.9 | 78 | I226N (ATC→AAC) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| * | NC_000913 | 2,361,547 | 0 | A | G | 24.0% | 148.4 / 10.7 | 75 | G221G (GGT→GGC) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| * | NC_000913 | 2,361,546 | 0 | T | C | 23.0% | 138.3 / 11.8 | 74 | T222A (ACC→GCC) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| * | NC_000913 | 3,214,658 | 0 | A | G | 21.2% | 172.5 / 13.3 | 86 | E538E (GAA→GAG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | NC_000913 | 2,361,548 | 0 | C | G | 20.8% | 178.6 / 16.2 | 77 | G221A (GGT→GCT) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| * | NC_000913 | 3,214,646 | 0 | T | G | 20.2% | 173.4 / 10.1 | 84 | S534S (TCT→TCG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| Marginal new junction evidence (lowest skew 10 of 59 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 274620 = | NA (NA) | 8 (0.110) | 8/276 | 8.4 | NA | coding (498/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274663 = | NA (NA) | coding (455/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 3426801 | NA (NA) | 14 (0.260) +41 bp |
4/212 | 8.8 | 17.7% | intergenic (‑20/+155) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913 | 4168561 = | 90 (1.210) | intergenic (+115/‑79) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 4213167 = | 77 (1.030) | 6 (0.090) | 6/272 | 9.4 | 8.3% | intergenic (+9/‑66) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| ? | NC_000913 | 4213198 = | 62 (0.900) | intergenic (+40/‑35) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 2884574 | 60 (0.810) | 5 (0.070) | 5/276 | 10.1 | 8.1% | coding (2644/2667 nt) | ygcB | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| ? | NC_000913 | = 2884578 | 57 (0.820) | coding (2640/2667 nt) | ygcB | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 | |||||
| * | ? | NC_000913 | 2662489 = | 93 (1.250) | 5 (0.070) | 5/280 | 10.2 | 5.1% | noncoding (183/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2662519 = | 98 (1.380) | noncoding (213/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 2662398 = | 114 (1.530) | 5 (0.070) | 5/280 | 10.2 | 4.6% | noncoding (92/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2662519 = | 98 (1.380) | noncoding (213/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 4171624 | 58 (0.780) | 12 (0.170) | 5/282 | 10.3 | 17.7% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213003 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 4040480 | NA (NA) | 12 (0.170) | 5/282 | 10.3 | 30.1% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4040504 | 29 (0.390) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3946687 | 77 (1.030) | 12 (0.170) | 5/282 | 10.3 | 14.0% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4040480 | NA (NA) | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 228744 | 68 (0.910) | 12 (0.170) | 5/282 | 10.3 | 15.5% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 4040480 | NA (NA) | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||