mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,361,533 | 0 | A | T | 21.9% | 248.7 / 30.6 | 120 | I226N (ATC→AAC) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| * | NC_000913 | 2,361,546 | 0 | T | C | 21.1% | 260.9 / 10.7 | 124 | T222A (ACC→GCC) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| Marginal new junction evidence (lowest skew 10 of 104 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542683 = | 97 (0.790) | 20 (0.170) | 20/278 | 9.4 | 17.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542997 = | 100 (0.860) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542691 | 101 (0.820) | 16 (0.140) | 16/278 | 11.0 | 14.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542987 | 100 (0.860) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 659191 = | 110 (0.890) | 8 (0.070) | 8/270 | 14.9 | 7.4% | intergenic (+41/+60) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase |
| ? | NC_000913 | 659221 = | 100 (0.890) | intergenic (+71/+30) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 12 (0.100) | 8/288 | 15.7 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 191719 | 139 (1.130) | 8 (0.070) | 7/282 | 16.1 | 5.9% | intergenic (+11/‑136) | tsf/pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| ? | NC_000913 | = 191739 | 122 (1.040) | intergenic (+31/‑116) | tsf/pyrH | translation elongation factor EF‑Ts/uridylate kinase | |||||
| * | ? | NC_000913 | = 3944977 | NA (NA) | 11 (0.090) | 7/284 | 16.2 | 17.8% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038810 | 53 (0.430) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 3423821 = | NA (NA) | 11 (0.090) | 7/284 | 16.2 | 7.4% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946687 | 143 (1.160) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 2727889 = | NA (NA) | 11 (0.090) | 7/284 | 16.2 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2726198 = | NA (NA) | 11 (0.090) | 7/284 | 16.2 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228744 | 103 (0.830) | 11 (0.090) | 7/284 | 16.2 | 10.0% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||