mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 42 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 77 (0.360) | 52/508 | 3.8 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 63 (0.300) | 50/500 | 3.9 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 696506 | 165 (0.760) | 3 (0.020) | 3/362 | 15.5 | 2.4% | intergenic (‑2/+36) | glnX/glnV | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | 696619 = | 131 (0.870) | intergenic (‑3/+45) | glnV/metU | tRNA‑Gln/tRNA‑Met | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 9 (0.050) | 5/438 | 15.8 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4542682 = | 20 (0.090) | 5 (0.020) | 5/498 | 17.0 | 7.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 104 (0.500) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1431308 | 196 (0.960) | 20 (0.100) +GGAATACATTAA |
4/466 | 17.1 | 9.3% | coding (2260/3363 nt) | stfR | Rac prophage; putative tail fiber protein |
| ? | NC_000913 | 1431309 = | 205 (0.950) | coding (2261/3363 nt) | stfR | Rac prophage; putative tail fiber protein | |||||
| * | ? | NC_000913 | = 25521 | 194 (0.920) | 7 (0.030) +GGC |
4/496 | 17.7 | 3.5% | coding (315/495 nt) | lspA | prolipoprotein signal peptidase (signal peptidase II) |
| ? | NC_000913 | 25522 = | 196 (0.910) | coding (316/495 nt) | lspA | prolipoprotein signal peptidase (signal peptidase II) | |||||
| * | ? | NC_000913 | = 3378611 | 202 (0.940) | 4 (0.020) | 4/512 | 18.0 | 2.0% | coding (41/429 nt) | rplM | 50S ribosomal subunit protein L13 |
| ? | NC_000913 | 3378617 = | 200 (0.930) | coding (35/429 nt) | rplM | 50S ribosomal subunit protein L13 | |||||
| * | ? | NC_000913 | = 2873905 | 188 (0.870) | 4 (0.020) | 4/510 | 18.0 | 2.1% | coding (88/606 nt) | cysC | adenosine 5'‑phosphosulfate kinase |
| ? | NC_000913 | 2873911 = | 182 (0.850) | coding (82/606 nt) | cysC | adenosine 5'‑phosphosulfate kinase | |||||
| * | ? | NC_000913 | = 2174580 | 144 (0.670) | 4 (0.020) | 4/512 | 18.0 | 2.7% | intergenic (‑14/+17) | gatB/gatA | galactitol‑specific enzyme IIB component of PTS/galactitol‑specific enzyme IIA component of PTS |
| ? | NC_000913 | 2174584 = | 144 (0.670) | intergenic (‑18/+13) | gatB/gatA | galactitol‑specific enzyme IIB component of PTS/galactitol‑specific enzyme IIA component of PTS | |||||