mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 20.0% | 134.3 / 15.1 | 72 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2521006 | 89 (0.470) | 4 (0.030) | 4/360 | 13.2 | 5.0% | noncoding (76/76 nt) | valU | tRNA‑Val |
| ? | NC_000913 | 2521249 = | 88 (0.650) | intergenic (+1/‑4) | valY/lysV | tRNA‑Val/tRNA‑Lys | |||||
| * | ? | NC_000913 | 4542682 = | 33 (0.170) | 8 (0.040) | 8/494 | 13.5 | 12.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 76 (0.410) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 6 (0.040) | 4/434 | 14.8 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 2146499 | 208 (1.090) | 4 (0.020) | 4/494 | 16.0 | 2.0% | coding (3234/3318 nt) | yegE | putative diguanylate cyclase |
| ? | NC_000913 | = 2146526 | 196 (1.060) | coding (3261/3318 nt) | yegE | putative diguanylate cyclase | |||||
| * | ? | NC_000913 | = 2123615 | 165 (0.860) | 4 (0.020) | 4/504 | 16.2 | 2.3% | coding (906/1437 nt) | cpsB | mannose‑1‑phosphate guanyltransferase |
| ? | NC_000913 | = 2123643 | 176 (0.930) | coding (878/1437 nt) | cpsB | mannose‑1‑phosphate guanyltransferase | |||||
| * | ? | NC_000913 | = 2069089 | NA (NA) | 4 (0.020) | 4/506 | 16.2 | NA | noncoding (1183/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2069093 = | NA (NA) | noncoding (1179/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 279163 = | NA (NA) | 111 (0.580) | 4/512 | 16.3 | 48.9% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2760086 | 116 (0.610) | coding (1102/1410 nt) | yfjI | CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 4125820 | 169 (0.910) | 13 (0.070) +CTG |
3/490 | 16.7 | 6.9% | coding (991/2199 nt) | priA | Primosome factor n' (replication factor Y) |
| ? | NC_000913 | 4125821 = | 178 (0.930) | coding (990/2199 nt) | priA | Primosome factor n' (replication factor Y) | |||||
| * | ? | NC_000913 | = 4392514 | 103 (0.540) | 3 (0.020) | 3/496 | 16.8 | 3.4% | noncoding (43/76 nt) | glyX | tRNA‑Gly |
| ? | NC_000913 | = 4392608 | 72 (0.390) | noncoding (26/76 nt) | glyY | tRNA‑Gly | |||||
| * | ? | NC_000913 | = 3676846 | 169 (0.900) | 6 (0.030) +CCC |
3/496 | 16.8 | 3.4% | coding (1505/2061 nt) | yhjG | putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | NC_000913 | 3676847 = | 171 (0.890) | coding (1504/2061 nt) | yhjG | putative inner membrane‑anchored periplasmic AsmA family protein | |||||