mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 24.5% | 93.7 / 15.1 | 50 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 54 (0.330) | 41/498 | 3.6 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1198453 | 39 (0.290) | 18 (0.110) +ATGAAATG |
3/394 | 13.5 | 27.9% | intergenic (‑216/‑242) | ymfE/lit | e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage |
| ? | NC_000913 | 1198454 = | 47 (0.280) | intergenic (‑217/‑241) | ymfE/lit | e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage | |||||
| * | ? | NC_000913 | 3787895 = | 487 (2.920) | 4 (0.020) | 4/494 | 14.7 | 0.86% | coding (1058/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor |
| ? | NC_000913 | = 3787891 | 458 (2.860) | coding (1054/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||
| * | ? | NC_000913 | = 2878158 | 122 (0.730) | 3 (0.020) | 3/452 | 14.7 | 2.9% | intergenic (+540/+411) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | 2878221 = | 93 (0.630) | intergenic (+603/+348) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913 | = 3814929 | 635 (3.960) | 57 (0.350) +GTGAGG |
3/482 | 15.3 | 8.1% | coding (436/597 nt) | slmA | nucleoid occlusion factor, anti‑FtsZ division inhibitor |
| ? | NC_000913 | 3814930 = | 656 (3.940) | coding (437/597 nt) | slmA | nucleoid occlusion factor, anti‑FtsZ division inhibitor | |||||
| * | ? | NC_000913 | = 3246148 | 134 (0.830) | 17 (0.100) +GTGCA |
3/486 | 15.3 | 11.1% | coding (925/1299 nt) | exuT | hexuronate transporter |
| ? | NC_000913 | 3246149 = | 140 (0.840) | coding (926/1299 nt) | exuT | hexuronate transporter | |||||
| * | ? | NC_000913 | 3927418 = | 153 (0.920) | 4 (0.030) | 3/490 | 15.4 | 2.7% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | 3927457 = | 146 (0.920) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | = 3854888 | 131 (0.790) | 3 (0.020) | 3/496 | 15.5 | 2.4% | coding (967/1185 nt) | emrD | multidrug efflux system protein |
| ? | NC_000913 | = 3854930 | 116 (0.720) | coding (1009/1185 nt) | emrD | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 3819519 | 696 (4.180) | 3 (0.020) | 3/496 | 15.5 | 0.44% | coding (1652/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| ? | NC_000913 | = 3819527 | 690 (4.290) | coding (1644/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent | |||||
| * | ? | NC_000913 | = 3783782 | 699 (4.280) | 6 (0.040) +TGG |
3/498 | 15.5 | 0.84% | coding (347/468 nt) | secB | protein export chaperone |
| ? | NC_000913 | 3783783 = | 713 (4.280) | coding (346/468 nt) | secB | protein export chaperone | |||||