mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 27.3% | 93.4 / 21.1 | 67 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 25.0% | 79.7 / 16.2 | 55 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 7 (0.060) | 5/440 | 11.0 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 3736656 = | 720 (5.070) | 6 (0.040) | 6/498 | 11.4 | 0.85% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736652 | 705 (5.160) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | = 447227 | 135 (0.950) | 5 (0.040) | 5/496 | 12.0 | 3.7% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | NC_000913 | = 447266 | 133 (0.980) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | NC_000913 | = 2070275 | NA (NA) | 5 (0.040) | 5/512 | 12.2 | NA | intergenic (‑95/‑2) | insC1/yoeA | IS2 repressor TnpA/CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion |
| ? | NC_000913 | 2996364 = | NA (NA) | noncoding (1328/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2765420 = | 99 (0.700) | 3 (0.030) | 3/430 | 12.3 | 3.6% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 78 (0.660) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 279163 = | NA (NA) | 76 (0.530) | 5/518 | 12.3 | 39.4% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2760086 | 117 (0.820) | coding (1102/1410 nt) | yfjI | CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 3536900 | 135 (0.950) | 5 (0.040) | 4/504 | 12.7 | 3.6% | coding (89/477 nt) | greB | transcript cleavage factor |
| ? | NC_000913 | = 3536907 | 134 (0.970) | coding (96/477 nt) | greB | transcript cleavage factor | |||||
| * | ? | NC_000913 | 365274 = | 164 (1.150) | 4 (0.030) | 4/500 | 12.7 | 2.4% | coding (1032/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | = 365270 | 164 (1.200) | coding (1036/3075 nt) | lacZ | beta‑D‑galactosidase | |||||
| * | ? | NC_000913 | = 251816 | 120 (0.840) | 4 (0.030) | 4/502 | 12.7 | 3.6% | coding (919/1056 nt) | dinB | DNA polymerase IV |
| ? | NC_000913 | = 251864 | 100 (0.730) | coding (967/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | NC_000913 | 3358749 = | 150 (1.060) | 4 (0.030) | 4/510 | 12.8 | 2.6% | coding (4025/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | = 3359295 | 150 (1.070) | coding (98/1419 nt) | gltD | glutamate synthase, 4Fe‑4S protein, small subunit | |||||