mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.8% | 204.6 / 79.2 | 116 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,284,909 | 0 | T | C | 20.4% | 92.5 / 17.3 | 44 | F178F (TTT→TTC) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| Marginal new junction evidence (lowest skew 10 of 316 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225078 = | NA (NA) | 12 (0.200) | 10/184 | 5.5 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 3811200 = | 75 (1.160) | 9 (0.160) | 9/174 | 5.6 | 12.1% | intergenic (‑48/+50) | mutM/rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| ? | NC_000913 | 3811236 = | 65 (1.150) | intergenic (‑84/+14) | mutM/rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 | |||||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 12 (0.200) | 9/186 | 6.0 | 42.9% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038811 | 17 (0.260) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 12 (0.200) | 9/186 | 6.0 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 227052 | 28 (0.430) | 12 (0.200) | 9/186 | 6.0 | 31.3% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 1207805 | 56 (0.870) | 7 (0.130) | 7/166 | 6.2 | 11.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 59 (1.090) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3635910 = | 63 (0.980) | 7 (0.120) | 7/174 | 6.4 | 11.3% | intergenic (+17/+298) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| ? | NC_000913 | 3635946 = | 55 (0.970) | intergenic (+53/+262) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase | |||||
| * | ? | NC_000913 | = 15586 | NA (NA) | 8 (0.130) | 8/188 | 6.4 | NA | noncoding (200/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 15595 | NA (NA) | noncoding (209/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 183661 | 70 (1.090) | 9 (0.160) | 7/178 | 6.6 | 12.5% | intergenic (+41/+48) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| ? | NC_000913 | = 183674 | 63 (1.090) | intergenic (+54/+35) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein | |||||
| * | ? | NC_000913 | = 4171625 | 17 (0.260) | 25 (0.410) | 7/186 | 6.8 | 61.0% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213004 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||