mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,494,543 | 0 | C | T | 20.2% | 212.2 / 41.1 | 94 | P178L (CCT→CTT) | nirB | nitrite reductase, large subunit, NAD(P)H‑binding |
| Marginal new junction evidence (lowest skew 10 of 171 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 115 (1.020) | 10 (0.110) | 9/166 | 10.7 | 9.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 86 (0.910) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 3383295 | 139 (1.230) | 8 (0.080) | 8/174 | 11.6 | 6.2% | intergenic (+28/+35) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | = 3383301 | 120 (1.210) | intergenic (+34/+29) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 1097245 = | NA (NA) | 10 (0.090) | 9/194 | 12.1 | 100% | intergenic (+416/+320) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097274 = | 0 (0.000) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 3943642 | NA (NA) | 10 (0.090) | 8/192 | 12.5 | 36.4% | intergenic (+132/‑62) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037438 | 18 (0.160) | intergenic (+103/‑81) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 3426833 = | NA (NA) | 8 (0.070) | 8/192 | 12.5 | NA | intergenic (‑50/+125) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913 | 3426858 = | NA (NA) | intergenic (‑75/+100) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 225678 | 161 (1.420) | 10 (0.090) | 8/192 | 12.5 | 6.0% | intergenic (+103/‑81) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 3943642 | NA (NA) | intergenic (+132/‑62) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 225678 | 161 (1.420) | 8 (0.070) | 8/192 | 12.5 | 4.9% | intergenic (+103/‑81) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 3426836 = | NA (NA) | intergenic (‑53/+122) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3110477 | 126 (1.110) | 11 (0.110) +AAGAATTAG |
6/180 | 13.2 | 8.6% | intergenic (+36/+113) | pheV/yghD | tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein |
| ? | NC_000913 | 4362551 = | 130 (1.150) | noncoding (76/76 nt) | pheU | tRNA‑Phe | |||||
| * | ? | NC_000913 | 1097062 = | 1 (0.010) | 10 (0.090) | 7/194 | 13.2 | 91.1% | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097276 = | NA (NA) | intergenic (+447/+289) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 998439 = | 169 (1.490) | 6 (0.060) | 6/180 | 13.2 | 3.9% | intergenic (+32/‑51) | elfA/elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| ? | NC_000913 | 998461 = | 146 (1.420) | intergenic (+54/‑29) | elfA/elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone | |||||