mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC JC | 1,971,027 | repeat_region (+) +4 bp :: Δ3 bp | coding (141‑144/144 nt) | yobF → | DUF2527 domain‑containing protein |
| MC JC | 2,443,520 | Δ23,060 bp | ynaE–[ttcA] | 33 genes ynaE, pinR, tfaR, stfR, ECDH1_RS12030, ECDH1_RS12035, ECDH1_RS12040, insH1, insH1, ECDH1_RS12055, ECDH1_RS12060, ECDH1_RS12065, ynaK, trkG, ECDH1_RS12080, ECDH1_RS12085, ydaV, ydaU, ydaT, ydaS, racR, ydaF, sieB, kil, ydaE, racC, recE, recT, lar, ydaC, ydaQ, intR, [ttcA] |
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| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| RA | 3,701,765 | Δ1 bp | coding (2129/2244 nt) | fhuA ← | ferrichrome‑iron receptor |
| RA | 4,546,838 | T→G | T406P (ACC→CCC) | rho ← | transcription termination factor Rho |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 250373 = | 7 (0.010) | 328 (0.660) | 199/300 | 0.6 | 97.9% | pseudogene (1069/1607 nt) | ECDH1_RS01185 | hypothetical protein |
| ? | DH1 | = 1587940 | NA (NA) | noncoding (1195/1198 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 2290085 = | 199 (0.410) | 305 (0.630) | 183/296 | 1.4 | 60.5% | coding (447/531 nt) | ydeS | fimbrial‑like adhesin protein |
| ? | DH1 | 2409238 = | NA (NA) | noncoding (4/1335 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2290093 | 194 (0.390) | 317 (0.650) | 181/298 | 1.6 | 62.0% | coding (455/531 nt) | ydeS | fimbrial‑like adhesin protein |
| ? | DH1 | = 2410568 | NA (NA) | noncoding (1334/1335 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2668875 | 304 (0.610) | 247 (0.560) | 154/268 | 2.3 | 52.2% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 181 (0.410) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | = 3884964 | 137 (0.280) | 348 (0.710) | 199/296 | 0.5 | 72.3% | coding (751/1233 nt) | nadR | trifunctional nicotinamide‑nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR |
| ? | DH1 | 3884977 = | 132 (0.270) | coding (738/1233 nt) | nadR | trifunctional nicotinamide‑nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR | |||||