mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 67 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4583137 | 556 (0.920) | 8 (0.010) | 6/264 | NT | 1.4% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 589 (1.010) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 4558302 = | 608 (1.000) | 6 (0.010) | 4/252 | NT | 1.1% | intergenic (‑13/+52) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | NC_000913 | 4558349 = | 527 (0.950) | intergenic (‑60/+5) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | = 4545126 | 518 (0.850) | 3 (0.010) | 3/264 | NT | 0.59% | coding (31/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | NC_000913 | = 4545164 | 523 (0.900) | coding (69/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| * | ? | NC_000913 | = 4542690 | 503 (0.830) | 6 (0.010) | 5/258 | NT | 1.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 544 (0.960) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 504 (0.830) | 5 (0.010) | 4/258 | NT | 0.98% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 544 (0.960) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4539648 = | 512 (0.840) | 5 (0.010) | 5/260 | NT | 1.1% | intergenic (‑147/‑1309) | nanC/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | NC_000913 | 4539669 = | 442 (0.770) | intergenic (‑168/‑1288) | nanC/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA | |||||
| * | ? | NC_000913 | 4486252 = | 587 (0.970) | 6 (0.010) | 5/260 | NT | 1.1% | coding (35/1101 nt) | lptF | lipopolysaccharide export ABC permease |
| ? | NC_000913 | 4486291 = | 503 (0.880) | coding (74/1101 nt) | lptF | lipopolysaccharide export ABC permease | |||||
| * | ? | NC_000913 | 4443452 = | 581 (0.960) | 3 (0.010) | 3/260 | NT | 0.55% | coding (1071/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | NC_000913 | 4443491 = | 542 (0.950) | coding (1110/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit | |||||
| * | ? | NC_000913 | 4396211 = | 761 (1.250) | 5 (0.010) | 5/262 | NT | 0.70% | coding (147/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | NC_000913 | 4396237 = | 689 (1.200) | coding (173/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
| * | ? | NC_000913 | = 4352395 | 483 (0.800) | 4 (0.010) | 4/264 | NT | 0.84% | intergenic (+38/‑189) | yjdJ/ghoS | GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA |
| ? | NC_000913 | = 4352408 | 484 (0.830) | intergenic (+51/‑176) | yjdJ/ghoS | GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA | |||||