mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,708,844 | 0 | C | G | 41.2% | ‑2.5 / 10.6 | 18 | A642A (GCC→GCG) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 4,296,060 | 0 | C | T | 37.9% | 86.4 / 104.6 | 106 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,269,994 | 0 | G | T | 36.4% | 42.7 / 13.1 | 56 | intergenic (+392/+222) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 423,552 | 0 | T | G | 24.0% | 185.0 / 15.9 | 97 | G345G (GGT→GGG) | malZ | maltodextrin glucosidase |
| Marginal new junction evidence (lowest skew 10 of 267 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 79 (0.630) | 16 (0.140) | 16/266 | 6.9 | 18.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 68 (0.610) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 95 (0.760) | 11 (0.100) | 10/266 | 8.8 | 12.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 69 (0.620) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 781369 = | 67 (0.530) | 18 (0.150) +GAG |
10/292 | 9.4 | 25.7% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 39 (0.310) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 1287084 | 34 (0.270) | 16 (0.150) | 8/258 | 9.5 | 24.3% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913 | 1287557 = | 70 (0.650) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 4542682 = | 140 (1.120) | 9 (0.080) | 9/280 | 9.6 | 6.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 121 (1.030) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3423376 = | 149 (1.190) | 18 (0.150) +TTGATGT |
8/284 | 10.1 | 11.2% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423672 = | NA (NA) | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | = 4542690 | 136 (1.090) | 8 (0.070) | 7/280 | 10.4 | 6.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 120 (1.020) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 9 (0.080) | 7/284 | 10.5 | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 11 (0.090) | 7/290 | 10.7 | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3248814 = | 153 (1.220) | 6 (0.050) | 6/278 | 10.9 | 4.1% | coding (376/384 nt) | mzrA | modulator of EnvZ/OmpR regulon |
| ? | NC_000913 | 3248839 = | 141 (1.210) | intergenic (+17/‑130) | mzrA/yqjC | modulator of EnvZ/OmpR regulon/DUF1090 family putative periplasmic protein | |||||