mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 162 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4633254 | NA (NA) | 4 (0.010) | 3/268 | NT | 1.0% | coding (492/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| ? | NC_000913 | = 4633303 | 388 (0.940) | coding (443/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase | |||||
| * | ? | NC_000913 | 4633091 = | NA (NA) | 4 (0.010) | 4/262 | NT | 0.95% | noncoding (1/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4633169 = | 427 (1.040) | noncoding (79/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 4614759 = | 618 (1.440) | 19 (0.050) | 7/270 | NT | 3.1% | coding (785/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | 4614791 = | 595 (1.430) | coding (753/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | = 4608980 | 394 (0.920) | 3 (0.010) | 3/254 | NT | 0.75% | coding (335/678 nt) | yjjG | dUMP phosphatase |
| ? | NC_000913 | = 4609081 | 435 (1.110) | coding (436/678 nt) | yjjG | dUMP phosphatase | |||||
| * | ? | NC_000913 | = 4561836 | 448 (1.050) | 3 (0.010) | 3/264 | NT | 0.66% | coding (840/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter |
| ? | NC_000913 | = 4561869 | 480 (1.180) | coding (807/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter | |||||
| * | ? | NC_000913 | = 4534139 | 473 (1.110) | 4 (0.010) | 4/258 | NT | 0.89% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 456 (1.150) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4486252 = | 389 (0.910) | 4 (0.010) | 3/262 | NT | 1.1% | coding (35/1101 nt) | lptF | lipopolysaccharide export ABC permease |
| ? | NC_000913 | 4486291 = | 339 (0.840) | coding (74/1101 nt) | lptF | lipopolysaccharide export ABC permease | |||||
| * | ? | NC_000913 | = 4459372 | 419 (0.980) | 5 (0.010) | 3/266 | NT | 1.3% | intergenic (+61/‑118) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) |
| ? | NC_000913 | = 4459452 | 361 (0.880) | intergenic (+141/‑38) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) | |||||
| * | ? | NC_000913 | 4445176 = | 517 (1.210) | 8 (0.020) | 5/264 | NT | 1.7% | coding (1065/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | NC_000913 | 4445210 = | 442 (1.090) | coding (1099/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| * | ? | NC_000913 | = 4442748 | 402 (0.940) | 5 (0.010) | 4/270 | NT | 1.3% | coding (367/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | NC_000913 | = 4442820 | 389 (0.940) | coding (439/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit | |||||