mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 255 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4636531 = | 103 (1.040) | 4 (0.040) | 3/256 | NT | 4.4% | coding (525/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | 4636847 = | 80 (0.880) | coding (152/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| * | ? | NC_000913 | = 4631397 | 110 (1.110) | 3 (0.030) | 3/264 | NT | 2.7% | coding (665/1938 nt) | slt | lytic murein transglycosylase, soluble |
| ? | NC_000913 | = 4631479 | 108 (1.150) | coding (747/1938 nt) | slt | lytic murein transglycosylase, soluble | |||||
| * | ? | NC_000913 | = 4628746 | 116 (1.220) | 3 (0.030) | 3/266 | NT | 2.5% | noncoding (52/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4628840 | NA (NA) | noncoding (146/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4626299 = | 88 (0.890) | 3 (0.030) | 3/268 | NT | 3.5% | coding (388/1383 nt) | radA | DNA repair protein |
| ? | NC_000913 | 4626342 = | 79 (0.830) | coding (431/1383 nt) | radA | DNA repair protein | |||||
| * | ? | NC_000913 | = 4613397 | 85 (0.860) | 3 (0.030) | 3/262 | NT | 3.6% | coding (987/1074 nt) | yjjU | putative patatin‑like family phospholipase |
| ? | NC_000913 | = 4613440 | 79 (0.850) | coding (1030/1074 nt) | yjjU | putative patatin‑like family phospholipase | |||||
| * | ? | NC_000913 | 4599065 = | 97 (0.980) | 4 (0.040) | 4/264 | NT | 4.4% | coding (377/2292 nt) | opgB | OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble) |
| ? | NC_000913 | 4599161 = | 81 (0.860) | coding (281/2292 nt) | opgB | OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble) | |||||
| * | ? | NC_000913 | = 4591667 | 140 (1.410) | 3 (0.030) | 3/266 | NT | 2.3% | coding (11/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| ? | NC_000913 | = 4591703 | 122 (1.290) | coding (47/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor | |||||
| * | ? | NC_000913 | 4569530 = | 100 (1.010) | 4 (0.040) | 4/262 | NT | 4.2% | pseudogene (533/921 nt) | yjiP | pseudogene, transposase_31 family protein |
| ? | NC_000913 | 4569585 = | 89 (0.950) | pseudogene (588/921 nt) | yjiP | pseudogene, transposase_31 family protein | |||||
| * | ? | NC_000913 | 4562615 = | 106 (1.070) | 4 (0.040) | 3/262 | NT | 3.8% | coding (61/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter |
| ? | NC_000913 | 4562662 = | 103 (1.100) | coding (14/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter | |||||
| * | ? | NC_000913 | 4558302 = | 115 (1.160) | 3 (0.030) | 3/254 | NT | 3.0% | intergenic (‑13/+52) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | NC_000913 | 4558349 = | 87 (0.960) | intergenic (‑60/+5) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||