breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	235	A→T	9.0%	T16S (ACA→TCA) ‡	thrL →	thr operon leader peptide
RA	236	C→G	8.3%	T16R (ACA→AGA) ‡	thrL →	thr operon leader peptide
RA	237	A→T	8.0%	T16T (ACA→ACT) ‡	thrL →	thr operon leader peptide
RA	243	C→T	8.0%	N18N (AAC→AAT)	thrL →	thr operon leader peptide
RA	4,139	G→A	8.0%	D136N (GAT→AAT) ‡	thrC →	L‑threonine synthase
RA	4,140	A→T	7.9%	D136V (GAT→GTT) ‡	thrC →	L‑threonine synthase
RA	4,141	T→C	8.1%	D136D (GAT→GAC) ‡	thrC →	L‑threonine synthase
RA	10,619	G→T	5.6%	intergenic (‑125/+24)	satP ← / ← yaaW	succinate‑acetate transporter/UPF0174 family protein
RA	10,620	A→T	5.5%	intergenic (‑126/+23)	satP ← / ← yaaW	succinate‑acetate transporter/UPF0174 family protein
RA	10,621	A→T	5.5%	intergenic (‑127/+22)	satP ← / ← yaaW	succinate‑acetate transporter/UPF0174 family protein
RA	10,622	A→C	5.6%	intergenic (‑128/+21)	satP ← / ← yaaW	succinate‑acetate transporter/UPF0174 family protein
RA	11,118	T→G	5.6%	N80T (AAC→ACC)	yaaW ←	UPF0174 family protein
RA	11,127	C→G	8.8%	S77T (AGT→ACT)	yaaW ←	UPF0174 family protein
RA	11,136	C→A	6.5%	G74V (GGT→GTT)	yaaW ←	UPF0174 family protein
RA	11,141	A→C	5.1%	H72Q (CAT→CAG)	yaaW ←	UPF0174 family protein
RA	15,318	G→A	6.9%	intergenic (+20/‑127)	dnaJ → / → insL1	chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
RA	15,319	T→C	6.1%	intergenic (+21/‑126)	dnaJ → / → insL1	chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
RA	25,027	T→G	7.3%	D879E (GAT→GAG)	ileS →	isoleucyl‑tRNA synthetase
RA	25,028	G→C	7.3%	A880P (GCT→CCT) ‡	ileS →	isoleucyl‑tRNA synthetase
RA	25,029	C→A	7.3%	A880D (GCT→GAT) ‡	ileS →	isoleucyl‑tRNA synthetase
RA	25,773	A→G	5.9%	intergenic (+72/‑53)	lspA → / → fkpB	prolipoprotein signal peptidase (signal peptidase II)/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	25,774	A→C	5.9%	intergenic (+73/‑52)	lspA → / → fkpB	prolipoprotein signal peptidase (signal peptidase II)/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	25,780	T→A	5.9%	intergenic (+79/‑46)	lspA → / → fkpB	prolipoprotein signal peptidase (signal peptidase II)/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	25,781	T→A	6.6%	intergenic (+80/‑45)	lspA → / → fkpB	prolipoprotein signal peptidase (signal peptidase II)/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	25,787	G→T	6.0%	intergenic (+86/‑39)	lspA → / → fkpB	prolipoprotein signal peptidase (signal peptidase II)/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	25,788	C→T	6.0%	intergenic (+87/‑38)	lspA → / → fkpB	prolipoprotein signal peptidase (signal peptidase II)/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	51,907	T→G	9.2%	E175A (GAA→GCA) ‡	rsmA ←	16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM‑dependent
RA	51,908	C→G	9.2%	E175Q (GAA→CAA) ‡	rsmA ←	16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM‑dependent
RA	51,909	C→A	9.7%	L174L (CTG→CTT)	rsmA ←	16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM‑dependent
RA	59,625	G→A	8.5%	intergenic (+346/+62)	yabP → / ← rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
RA	59,626	A→G	8.5%	intergenic (+347/+61)	yabP → / ← rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
RA	59,627	C→T	8.5%	intergenic (+348/+60)	yabP → / ← rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
RA	59,628	T→C	8.5%	intergenic (+349/+59)	yabP → / ← rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
RA	65,808	T→A	7.3%	intergenic (‑28/+47)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase
RA	65,809	G→T	6.9%	intergenic (‑29/+46)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase
RA	65,811	G→C	6.5%	intergenic (‑31/+44)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase
RA	65,813	A→C	6.3%	intergenic (‑33/+42)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase
RA	65,814	T→A	6.5%	intergenic (‑34/+41)	polB ← / ← araD	DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase
RA	78,830	T→A	8.5%	intergenic (+31/+18)	setA → / ← leuD	broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit
RA	78,831	T→A	7.8%	intergenic (+32/+17)	setA → / ← leuD	broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit
RA	83,587	A→C	14.8%	intergenic (‑58/+35)	leuA ← / ← leuL	2‑isopropylmalate synthase/leu operon leader peptide
RA	83,590	G→T	14.7%	intergenic (‑61/+32)	leuA ← / ← leuL	2‑isopropylmalate synthase/leu operon leader peptide
RA	87,881	A→G	5.3%	intergenic (+33/‑147)	ilvH → / → cra	acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA	87,884	T→A	5.3%	intergenic (+36/‑144)	ilvH → / → cra	acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA	87,887	C→T	5.2%	intergenic (+39/‑141)	ilvH → / → cra	acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA	95,070	G→A	5.9%	V141I (GTA→ATA) ‡	murF →	UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase
RA	95,071	T→C	5.9%	V141A (GTA→GCA) ‡	murF →	UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase
RA	95,079	A→T	6.4%	T144S (ACG→TCG)	murF →	UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase
RA	100,158	C→T	6.7%	P172L (CCG→CTG)	murG →	N‑acetylglucosaminyl transferase
RA	100,161	A→G	6.2%	Q173R (CAG→CGG)	murG →	N‑acetylglucosaminyl transferase
RA	105,046	A→C	5.4%	Q355H (CAA→CAC)	ftsA →	ATP‑binding cell division FtsK recruitment protein
RA	111,013	G→A	5.4%	intergenic (+29/‑31)	secA → / → mutT	preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA	111,016	T→C	5.2%	intergenic (+32/‑28)	secA → / → mutT	preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA	114,506	G→T	5.1%	intergenic (+19/+16)	guaC → / ← hofC	GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA	114,507	A→T	5.0%	intergenic (+20/+15)	guaC → / ← hofC	GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA	114,510	A→T	5.3%	intergenic (+23/+12)	guaC → / ← hofC	GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA	114,511	A→C	5.3%	intergenic (+24/+11)	guaC → / ← hofC	GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA	120,154	Δ1 bp	6.2%	intergenic (+19/+24)	ampE → / ← aroP	ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA	120,158:1	+A	6.2%	intergenic (+23/+20)	ampE → / ← aroP	ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA	126,156	T→A	5.4%	A154A (GCT→GCA)	aceF →	pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2
RA	137,018	G→C	6.7%	intergenic (‑101/‑65)	yacC ← / → cueO	PulS_OutS family protein/multicopper oxidase (laccase)
RA	137,020	A→T	6.6%	intergenic (‑103/‑63)	yacC ← / → cueO	PulS_OutS family protein/multicopper oxidase (laccase)
RA	137,022	G→C	6.9%	intergenic (‑105/‑61)	yacC ← / → cueO	PulS_OutS family protein/multicopper oxidase (laccase)
RA	138,662	T→G	9.9%	intergenic (+29/+173)	cueO → / ← gcd	multicopper oxidase (laccase)/glucose dehydrogenase
RA	138,663	C→A	8.4%	intergenic (+30/+172)	cueO → / ← gcd	multicopper oxidase (laccase)/glucose dehydrogenase
RA	138,664	T→G	8.4%	intergenic (+31/+171)	cueO → / ← gcd	multicopper oxidase (laccase)/glucose dehydrogenase
RA	138,665	C→A	9.4%	intergenic (+32/+170)	cueO → / ← gcd	multicopper oxidase (laccase)/glucose dehydrogenase
RA	143,533	T→C	5.5%	L252P (CTG→CCG) ‡	yadG →	putative ABC transporter ATPase
RA	143,534	G→A	5.6%	L252L (CTG→CTA) ‡	yadG →	putative ABC transporter ATPase
RA	151,519	A→C	7.5%	I27M (ATT→ATG)	yadK ←	putative fimbrial‑like adhesin protein
RA	151,522	G→T	9.0%	A26A (GCC→GCA)	yadK ←	putative fimbrial‑like adhesin protein
RA	157,879	C→A	5.1%	L416L (CTG→CTT)	pcnB ←	poly(A) polymerase
RA	163,417	A→T	5.9%	K438I (AAA→ATA) ‡	hrpB →	putative ATP‑dependent helicase
RA	163,418	A→T	5.9%	K438N (AAA→AAT) ‡	hrpB →	putative ATP‑dependent helicase
RA	163,419	A→T	5.9%	I439F (ATT→TTT)	hrpB →	putative ATP‑dependent helicase
RA	165,038	T→G	7.0%	P103P (CCT→CCG)	mrcB →	fused glycosyl transferase and transpeptidase
RA	165,039	G→C	5.8%	A104P (GCG→CCG) ‡	mrcB →	fused glycosyl transferase and transpeptidase
RA	165,040	C→A	7.0%	A104E (GCG→GAG) ‡	mrcB →	fused glycosyl transferase and transpeptidase
RA	167,291	G→A	6.5%	intergenic (+27/‑193)	mrcB → / → fhuA	fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter
RA	167,293	G→C	7.1%	intergenic (+29/‑191)	mrcB → / → fhuA	fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter
RA	167,295	T→C	6.7%	intergenic (+31/‑189)	mrcB → / → fhuA	fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter
RA	179,373	G→A	5.9%	R46H (CGT→CAT)	dgt →	deoxyguanosine triphosphate triphosphohydrolase
RA	201,032	G→A	8.7%	G21D (GGC→GAC)	lpxD →	UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase
RA	201,041	T→C	9.9%	V24A (GTC→GCC)	lpxD →	UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase
RA	202,043	C→A	5.8%	intergenic (+47/‑58)	lpxD → / → fabZ	UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase/(3R)‑hydroxymyristol acyl carrier protein dehydratase
RA	202,049	C→A	5.1%	intergenic (+53/‑52)	lpxD → / → fabZ	UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase/(3R)‑hydroxymyristol acyl carrier protein dehydratase
RA	209,604	T→C	7.3%	intergenic (+24/‑75)	accA → / → ldcC	acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive
RA	209,608	T→C	7.4%	intergenic (+28/‑71)	accA → / → ldcC	acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive
RA	209,609	T→G	8.2%	intergenic (+29/‑70)	accA → / → ldcC	acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive
RA	209,610	C→A	7.0%	intergenic (+30/‑69)	accA → / → ldcC	acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive
RA	209,611	G→A	7.6%	intergenic (+31/‑68)	accA → / → ldcC	acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive
RA	209,615	G→A	7.1%	intergenic (+35/‑64)	accA → / → ldcC	acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive
RA	212,726	T→G	7.4%	S132R (AGT→AGG)	tilS →	tRNA(Ile)‑lysidine synthetase
RA	212,728	G→C	6.0%	G133A (GGC→GCC)	tilS →	tRNA(Ile)‑lysidine synthetase
RA	212,730	C→A	5.4%	P134T (CCT→ACT)	tilS →	tRNA(Ile)‑lysidine synthetase
RA	219,011	G→A	5.0%	P195L (CCG→CTG)	tsaA ←	tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent
RA	240,840	T→G	9.9%	intergenic (+24/+19)	ivy → / ← fadE	inhibitor of c‑type lysozyme, periplasmic/acyl coenzyme A dehydrogenase
RA	240,841	T→A	9.8%	intergenic (+25/+18)	ivy → / ← fadE	inhibitor of c‑type lysozyme, periplasmic/acyl coenzyme A dehydrogenase
RA	240,842	T→A	9.9%	intergenic (+26/+17)	ivy → / ← fadE	inhibitor of c‑type lysozyme, periplasmic/acyl coenzyme A dehydrogenase
RA	240,843	C→A	10.0%	intergenic (+27/+16)	ivy → / ← fadE	inhibitor of c‑type lysozyme, periplasmic/acyl coenzyme A dehydrogenase
RA	252,589	G→C	9.5%	A97P (GCA→CCA)	yafO →	mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA	252,594	G→C	9.4%	W98C (TGG→TGC)	yafO →	mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA	254,223	A→T	11.5%	intergenic (+21/+36)	prfH → / ← pepD	pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
RA	254,228	A→T	12.3%	intergenic (+26/+31)	prfH → / ← pepD	pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
RA	254,233	A→T	12.7%	intergenic (+31/+26)	prfH → / ← pepD	pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
RA	254,238	A→T	12.2%	intergenic (+36/+21)	prfH → / ← pepD	pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
RA	256,449	T→C	5.3%	intergenic (+14/‑78)	gpt → / → frsA	xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
RA	256,454	C→G	5.2%	intergenic (+19/‑73)	gpt → / → frsA	xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
RA	256,459	G→A	5.2%	intergenic (+24/‑68)	gpt → / → frsA	xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
MC JC	257,908	Δ776 bp	100%		[crl]	[crl]
RA	265,573	G→A	6.2%	intergenic (‑30/+47)	ykfF ← / ← ykfB	CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein
RA	265,578	C→T	6.1%	intergenic (‑35/+42)	ykfF ← / ← ykfB	CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein
RA	265,579	T→A	7.1%	intergenic (‑36/+41)	ykfF ← / ← ykfB	CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein
RA	265,582	T→A	5.4%	intergenic (‑39/+38)	ykfF ← / ← ykfB	CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein
RA	265,583	A→G	5.3%	intergenic (‑40/+37)	ykfF ← / ← ykfB	CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein
RA	265,588	T→C	6.2%	intergenic (‑45/+32)	ykfF ← / ← ykfB	CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein
RA	282,513	T→C	7.8%	L79P (CTG→CCG)	yagE →	2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
RA	282,518	G→A	8.3%	G81S (GGC→AGC)	yagE →	2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
RA	289,256	G→C	8.1%	intergenic (‑94/+45)	yagI ← / ← argF	CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage
RA	289,257	T→A	8.9%	intergenic (‑95/+44)	yagI ← / ← argF	CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage
RA	297,212	C→A	5.7%	pseudogene (7/49 nt)	ptwF →	tRNA‑OTHER
RA	297,213	G→C	5.2%	pseudogene (8/49 nt)	ptwF →	tRNA‑OTHER
RA	297,214	T→G	5.2%	pseudogene (9/49 nt)	ptwF →	tRNA‑OTHER
RA	302,516	C→A	8.5%	D20Y (GAT→TAT)	paoA ←	PaoABC aldehyde oxidoreductase, 2Fe‑2S subunit
RA	312,303	T→G	8.2%	V64V (GTT→GTG)	ykgL →	uncharacterized protein
RA	312,304	A→T	8.7%	I65L (ATA→TTA) ‡	ykgL →	uncharacterized protein
RA	312,306	A→T	8.1%	I65I (ATA→ATT) ‡	ykgL →	uncharacterized protein
RA	312,308	A→T	8.7%	N66I (AAC→ATC)	ykgL →	uncharacterized protein
RA	317,566	G→A	5.4%	pseudogene (128/129 nt)	ykgQ →	pseudogene, putative dehydrogenase
RA	317,571	T→C	5.5%	intergenic (+4/+155)	ykgQ → / ← rclC	pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein
RA	318,649	T→C	10.9%	intergenic (‑82/+27)	rclB ← / ← rclA	reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family
RA	318,651	T→A	11.1%	intergenic (‑84/+25)	rclB ← / ← rclA	reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family
RA	318,652	T→A	10.6%	intergenic (‑85/+24)	rclB ← / ← rclA	reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family
RA	318,654	G→A	10.8%	intergenic (‑87/+22)	rclB ← / ← rclA	reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family
RA	324,874	T→G	9.6%	N164T (AAC→ACC) ‡	ykgH ←	putative inner membrane protein
RA	324,875	T→A	8.3%	N164Y (AAC→TAC) ‡	ykgH ←	putative inner membrane protein
RA	324,876	C→A	8.5%	R163S (AGG→AGT)	ykgH ←	putative inner membrane protein
RA	327,213	G→C	6.7%	S12* (TCA→TGA)	betA ←	choline dehydrogenase, a flavoprotein
RA	329,503	A→G	5.2%	N14S (AAT→AGT)	betT →	choline transporter of high affinity
RA	329,509	T→C	5.9%	V16A (GTG→GCG)	betT →	choline transporter of high affinity
RA	329,512	T→A	5.1%	V17E (GTG→GAG)	betT →	choline transporter of high affinity
RA	329,514	T→G	5.7%	F18V (TTT→GTT)	betT →	choline transporter of high affinity
RA	329,519	C→A	5.1%	Y19* (TAC→TAA)	betT →	choline transporter of high affinity
RA	329,523	T→A	9.4%	S21T (TCC→ACC)	betT →	choline transporter of high affinity
RA	329,526	G→A	5.4%	A22T (GCC→ACC)	betT →	choline transporter of high affinity
RA	329,532	C→T	5.3%	L24L (CTG→TTG)	betT →	choline transporter of high affinity
RA	357,491	G→A	5.9%	intergenic (+37/+300)	codA → / ← cynR	cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor
RA	357,492	C→A	5.9%	intergenic (+38/+299)	codA → / ← cynR	cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor
RA	357,499	A→C	5.1%	intergenic (+45/+292)	codA → / ← cynR	cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor
RA	357,505	T→G	5.9%	intergenic (+51/+286)	codA → / ← cynR	cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor
RA	357,506	T→C	7.0%	intergenic (+52/+285)	codA → / ← cynR	cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor
RA	360,265	C→A	7.4%	L92I (CTT→ATT) ‡	cynX →	putative cyanate transporter
RA	360,266	T→G	7.7%	L92R (CTT→CGT) ‡	cynX →	putative cyanate transporter
RA	383,897	C→T	6.9%	M13I (ATG→ATA) ‡	yaiP ←	putative family 2 glycosyltransferase
RA	383,898	A→G	6.9%	M13T (ATG→ACG) ‡	yaiP ←	putative family 2 glycosyltransferase
RA	394,153	C→A	8.4%	pseudogene (1184/1449 nt)	yaiT →	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein
RA	394,473	G→T	5.1%	intergenic (+55/‑33)	yaiT → / → yaiV	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
RA	397,560	A→T	5.5%	N308Y (AAC→TAC)	sbmA →	peptide antibiotic transporter
RA	404,113	A→C	5.8%	A137A (GCA→GCC)	yaiC →	diguanylate cyclase, cellulose regualtor
RA	404,115	G→C	6.3%	G138A (GGC→GCC)	yaiC →	diguanylate cyclase, cellulose regualtor
RA	404,117	G→T	6.3%	G139C (GGC→TGC)	yaiC →	diguanylate cyclase, cellulose regualtor
RA	420,941	T→A	5.3%	intergenic (+31/‑45)	brnQ → / → proY	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA	420,942	G→T	5.0%	intergenic (+32/‑44)	brnQ → / → proY	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA	420,945	A→C	5.4%	intergenic (+35/‑41)	brnQ → / → proY	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA	420,946	T→A	5.1%	intergenic (+36/‑40)	brnQ → / → proY	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA	429,553	T→A	7.7%	Y17N (TAT→AAT) ‡	secF →	SecYEG protein translocase auxillary subunit
RA	429,554	A→T	7.2%	Y17F (TAT→TTT) ‡	secF →	SecYEG protein translocase auxillary subunit
RA	429,555	T→A	7.3%	Y17* (TAT→TAA) ‡	secF →	SecYEG protein translocase auxillary subunit
RA	430,506	G→A	12.5%	intergenic (+30/‑99)	secF → / → yajD	SecYEG protein translocase auxillary subunit/HNH nuclease family protein
RA	430,509	A→T	13.4%	intergenic (+33/‑96)	secF → / → yajD	SecYEG protein translocase auxillary subunit/HNH nuclease family protein
RA	430,510	G→T	12.4%	intergenic (+34/‑95)	secF → / → yajD	SecYEG protein translocase auxillary subunit/HNH nuclease family protein
RA	430,511	A→C	12.7%	intergenic (+35/‑94)	secF → / → yajD	SecYEG protein translocase auxillary subunit/HNH nuclease family protein
RA	430,512	A→T	12.0%	intergenic (+36/‑93)	secF → / → yajD	SecYEG protein translocase auxillary subunit/HNH nuclease family protein
RA	430,515	T→C	12.5%	intergenic (+39/‑90)	secF → / → yajD	SecYEG protein translocase auxillary subunit/HNH nuclease family protein
RA	443,022	G→A	9.5%	intergenic (+25/+29)	thiI → / ← yajL	tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA	443,023	T→C	9.3%	intergenic (+26/+28)	thiI → / ← yajL	tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA	446,786	C→T	5.9%	intergenic (‑120/+29)	yajR ← / ← cyoE	putative transporter/protoheme IX farnesyltransferase
RA	446,787	G→A	5.9%	intergenic (‑121/+28)	yajR ← / ← cyoE	putative transporter/protoheme IX farnesyltransferase
RA	446,788	T→C	6.1%	intergenic (‑122/+27)	yajR ← / ← cyoE	putative transporter/protoheme IX farnesyltransferase
RA	446,789	A→G	6.1%	intergenic (‑123/+26)	yajR ← / ← cyoE	putative transporter/protoheme IX farnesyltransferase
RA	448,363	A→T	6.2%	S100T (TCC→ACC)	cyoC ←	cytochrome o ubiquinol oxidase subunit III
RA	448,364	G→T	6.3%	I99I (ATC→ATA)	cyoC ←	cytochrome o ubiquinol oxidase subunit III
RA	448,367	A→C	5.9%	V98V (GTT→GTG) ‡	cyoC ←	cytochrome o ubiquinol oxidase subunit III
RA	448,368	A→T	6.4%	V98D (GTT→GAT) ‡	cyoC ←	cytochrome o ubiquinol oxidase subunit III
RA	454,853	T→C	10.8%	intergenic (+64/‑280)	bolA → / → tig	stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA	454,856	G→A	10.9%	intergenic (+67/‑277)	bolA → / → tig	stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA	458,738	G→A	8.9%	intergenic (+38/‑150)	clpX → / → lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
RA	458,742	T→A	7.9%	intergenic (+42/‑146)	clpX → / → lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
RA	458,743	T→A	8.6%	intergenic (+43/‑145)	clpX → / → lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
RA	458,744	T→A	8.9%	intergenic (+44/‑144)	clpX → / → lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
RA	480,236	C→G	9.1%	E25Q (GAG→CAG)	hha ←	modulator of gene expression, with H‑NS
RA	480,237	C→G	9.0%	L24L (CTG→CTC)	hha ←	modulator of gene expression, with H‑NS
RA	481,225	T→G	9.3%	intergenic (‑517/+29)	tomB ← / ← acrB	Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA	481,228	C→A	8.4%	intergenic (‑520/+26)	tomB ← / ← acrB	Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA	495,026	A→T	6.0%	intergenic (+16/‑94)	recR → / → htpG	gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase
RA	495,027	T→G	6.3%	intergenic (+17/‑93)	recR → / → htpG	gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase
RA	495,028	C→A	6.3%	intergenic (+18/‑92)	recR → / → htpG	gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase
RA	495,029	A→T	6.3%	intergenic (+19/‑91)	recR → / → htpG	gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase
RA	497,854	T→A	5.8%	intergenic (+35/‑201)	adk → / → hemH	adenylate kinase/ferrochelatase
RA	497,855	C→G	6.3%	intergenic (+36/‑200)	adk → / → hemH	adenylate kinase/ferrochelatase
RA	501,456	A→C	5.3%	intergenic (+27/+106)	gsk → / ← ybaL	inosine/guanosine kinase/inner membrane putative NAD(P)‑binding transporter
RA	501,462	T→G	6.0%	intergenic (+33/+100)	gsk → / ← ybaL	inosine/guanosine kinase/inner membrane putative NAD(P)‑binding transporter
RA	501,469	G→T	5.9%	intergenic (+40/+93)	gsk → / ← ybaL	inosine/guanosine kinase/inner membrane putative NAD(P)‑binding transporter
RA	501,470	C→T	5.9%	intergenic (+41/+92)	gsk → / ← ybaL	inosine/guanosine kinase/inner membrane putative NAD(P)‑binding transporter
RA	506,586	T→A	5.7%	intergenic (+20/+17)	ushA → / ← ybaK	bifunctional UDP‑sugar hydrolase/5'‑nucleotidase/Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase
RA	507,268	G→T	6.3%	noncoding (65/84 nt)	chiX →	sRNA antisense regulator of OM chitoporin ChiP(YbfM), Hfq‑dependent
RA	507,271	A→C	5.9%	noncoding (68/84 nt)	chiX →	sRNA antisense regulator of OM chitoporin ChiP(YbfM), Hfq‑dependent
RA	543,207	A→T	6.0%	intergenic (+174/+54)	glxK → / ← allE	glycerate kinase II/S‑ureidoglycine aminohydrolase
RA	543,210	A→T	5.7%	intergenic (+177/+51)	glxK → / ← allE	glycerate kinase II/S‑ureidoglycine aminohydrolase
RA	543,747	T→A	5.7%	T100T (ACA→ACT) ‡	allE ←	S‑ureidoglycine aminohydrolase
RA	543,748	G→C	7.0%	T100R (ACA→AGA) ‡	allE ←	S‑ureidoglycine aminohydrolase
RA	543,749	T→A	5.7%	T100S (ACA→TCA) ‡	allE ←	S‑ureidoglycine aminohydrolase
RA	556,018	G→A	5.8%	intergenic (+22/+14)	cysS → / ← ybcI	cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein
RA	556,020	T→A	5.9%	intergenic (+24/+12)	cysS → / ← ybcI	cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein
RA	556,021	T→C	6.0%	intergenic (+25/+11)	cysS → / ← ybcI	cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein
RA	568,685	T→A	6.8%	intergenic (+38/‑217)	emrE → / → ybcK	DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase
RA	568,690	T→A	6.4%	intergenic (+43/‑212)	emrE → / → ybcK	DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase
RA	568,691	T→A	6.2%	intergenic (+44/‑211)	emrE → / → ybcK	DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase
RA	568,696	T→A	5.6%	intergenic (+49/‑206)	emrE → / → ybcK	DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase
RA	569,160	G→T	5.1%	D87Y (GAC→TAC)	ybcK →	DLP12 prophage; putative recombinase
RA	603,391	C→G	6.1%	intergenic (+56/+25)	pheP → / ← ybdG	phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA	603,393	T→A	6.7%	intergenic (+58/+23)	pheP → / ← ybdG	phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA	603,395	C→G	6.1%	intergenic (+60/+21)	pheP → / ← ybdG	phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA	605,022	C→G	6.0%	D135H (GAT→CAT)	nfsB ←	dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
RA	605,025	C→G	6.0%	D134H (GAT→CAT)	nfsB ←	dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
RA	619,410	T→C	13.1%	T264A (ACG→GCG)	fepC ←	ferrienterobactin ABC transporter ATPase
RA	621,496	T→G	5.4%	S232R (AGT→CGT)	fepD ←	ferrienterobactin ABC transporter permease
RA	621,499	C→G	6.3%	G231R (GGC→CGC)	fepD ←	ferrienterobactin ABC transporter permease
RA	621,501	A→T	5.4%	L230Q (CTG→CAG)	fepD ←	ferrienterobactin ABC transporter permease
RA	621,503	C→G	5.7%	A229A (GCG→GCC)	fepD ←	ferrienterobactin ABC transporter permease
RA	621,506	C→A	5.7%	T228T (ACG→ACT)	fepD ←	ferrienterobactin ABC transporter permease
RA	622,455	G→C	6.3%	W52C (TGG→TGC)	entS →	enterobactin exporter, iron‑regulated
RA	624,589	T→A	5.3%	intergenic (‑79/‑296)	fepB ← / → entC	ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1
RA	624,590	T→A	5.1%	intergenic (‑80/‑295)	fepB ← / → entC	ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1
RA	624,596	A→C	6.3%	intergenic (‑86/‑289)	fepB ← / → entC	ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1
RA	632,076	G→C	5.3%	intergenic (+77/‑106)	cstA → / → ybdD	carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein
RA	632,077	T→C	5.3%	intergenic (+78/‑105)	cstA → / → ybdD	carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein
RA	632,082	C→A	5.8%	intergenic (+83/‑100)	cstA → / → ybdD	carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein
RA	644,030	A→G	6.8%	intergenic (‑63/+167)	rnk ← / ← rna	regulator of nucleoside diphosphate kinase/ribonuclease I
RA	644,034	T→C	6.1%	intergenic (‑67/+163)	rnk ← / ← rna	regulator of nucleoside diphosphate kinase/ribonuclease I
RA	644,036	A→T	6.0%	intergenic (‑69/+161)	rnk ← / ← rna	regulator of nucleoside diphosphate kinase/ribonuclease I
RA	644,038	G→A	6.2%	intergenic (‑71/+159)	rnk ← / ← rna	regulator of nucleoside diphosphate kinase/ribonuclease I
RA	644,042	C→T	6.2%	intergenic (‑75/+155)	rnk ← / ← rna	regulator of nucleoside diphosphate kinase/ribonuclease I
RA	657,531	T→G	9.4%	intergenic (+30/+24)	cspE → / ← flc	constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA	657,533	A→T	10.3%	intergenic (+32/+22)	cspE → / ← flc	constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA	657,535	C→A	9.5%	intergenic (+34/+20)	cspE → / ← flc	constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA	659,205	A→T	5.3%	intergenic (+55/+46)	tatE → / ← lipA	TatABCE protein translocation system subunit/lipoate synthase
RA	665,094	G→C	5.1%	P33A (CCT→GCT)	rlpA ←	septal ring protein, suppressor of prc, minor lipoprotein
RA	681,694	A→G	12.7%	intergenic (+31/+29)	djlC → / ← hscC	J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA	681,699	T→A	12.7%	intergenic (+36/+24)	djlC → / ← hscC	J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA	681,700	T→A	12.7%	intergenic (+37/+23)	djlC → / ← hscC	J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA	681,705	C→T	13.7%	intergenic (+42/+18)	djlC → / ← hscC	J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA	693,023	T→G	5.3%	K119T (AAG→ACG)	ybeZ ←	heat shock protein, putative NTPase; PhoH‑like protein
RA	693,030	C→A	5.3%	V117L (GTA→TTA)	ybeZ ←	heat shock protein, putative NTPase; PhoH‑like protein
RA	697,487	A→T	6.2%	intergenic (‑354/+26)	metT ← / ← asnB	tRNA‑Met/asparagine synthetase B
RA	697,488	T→G	6.4%	intergenic (‑355/+25)	metT ← / ← asnB	tRNA‑Met/asparagine synthetase B
RA	697,489	T→A	6.5%	intergenic (‑356/+24)	metT ← / ← asnB	tRNA‑Met/asparagine synthetase B
RA	697,490	T→A	6.7%	intergenic (‑357/+23)	metT ← / ← asnB	tRNA‑Met/asparagine synthetase B
RA	697,491	C→A	5.8%	intergenic (‑358/+22)	metT ← / ← asnB	tRNA‑Met/asparagine synthetase B
RA	697,492	A→T	6.7%	intergenic (‑359/+21)	metT ← / ← asnB	tRNA‑Met/asparagine synthetase B
RA	710,170	C→T	9.2%	intergenic (+54/+30)	chiQ → / ← fur	chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA	710,173	A→G	8.0%	intergenic (+57/+27)	chiQ → / ← fur	chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA	722,836	T→A	6.1%	S527C (AGT→TGT)	kdpD ←	fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein
RA	741,034	A→G	7.4%	intergenic (+109/+41)	phr → / ← dtpD	deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D
RA	741,035	A→C	7.1%	intergenic (+110/+40)	phr → / ← dtpD	deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D
RA	741,041	G→T	6.0%	intergenic (+116/+34)	phr → / ← dtpD	deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D
RA	741,043	C→G	6.3%	intergenic (+118/+32)	phr → / ← dtpD	deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D
RA	741,045	A→C	6.5%	intergenic (+120/+30)	phr → / ← dtpD	deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D
RA	741,051	G→T	5.5%	intergenic (+126/+24)	phr → / ← dtpD	deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D
RA	741,052	C→T	5.4%	intergenic (+127/+23)	phr → / ← dtpD	deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D
RA	752,065	G→C	6.7%	D35E (GAC→GAG) ‡	ybgQ ←	putative outer membrane protein
RA	752,066	T→G	7.3%	D35A (GAC→GCC) ‡	ybgQ ←	putative outer membrane protein
RA	752,067	C→A	5.7%	D35Y (GAC→TAC) ‡	ybgQ ←	putative outer membrane protein
RA	752,068	G→C	7.2%	R34R (CGC→CGG)	ybgQ ←	putative outer membrane protein
RA	756,326	T→G	6.6%	R140R (CGT→CGG)	sdhA →	succinate dehydrogenase, flavoprotein subunit
RA	756,327	A→T	6.5%	T141S (ACC→TCC) ‡	sdhA →	succinate dehydrogenase, flavoprotein subunit
RA	756,328	C→A	6.7%	T141N (ACC→AAC) ‡	sdhA →	succinate dehydrogenase, flavoprotein subunit
RA	756,643	T→A	5.2%	I246N (ATT→AAT)	sdhA →	succinate dehydrogenase, flavoprotein subunit
RA	775,613	T→C	6.9%	I154T (ATC→ACC)	tolQ →	membrane spanning protein in TolA‑TolQ‑TolR complex
RA	775,620	C→G	7.7%	L156L (CTC→CTG)	tolQ →	membrane spanning protein in TolA‑TolQ‑TolR complex
RA	775,621	G→A	8.3%	G157R (GGG→AGG)	tolQ →	membrane spanning protein in TolA‑TolQ‑TolR complex
RA	775,627	G→A	7.7%	V159I (GTA→ATA)	tolQ →	membrane spanning protein in TolA‑TolQ‑TolR complex
RA	779,438	T→G	5.3%	R124R (CGT→CGG)	pal →	peptidoglycan‑associated outer membrane lipoprotein
RA	781,668	C→T	6.5%	intergenic (+16/‑417)	lysQ → / → nadA	tRNA‑Lys/quinolinate synthase, subunit A
RA	781,670	A→T	7.7%	intergenic (+18/‑415)	lysQ → / → nadA	tRNA‑Lys/quinolinate synthase, subunit A
RA	781,672	A→G	6.7%	intergenic (+20/‑413)	lysQ → / → nadA	tRNA‑Lys/quinolinate synthase, subunit A
RA	808,430	T→A	5.1%	L276F (TTA→TTT)	bioA ←	7,8‑diaminopelargonic acid synthase, PLP‑dependent
RA	808,434	G→C	5.3%	A275G (GCC→GGC)	bioA ←	7,8‑diaminopelargonic acid synthase, PLP‑dependent
RA	830,666	A→T	6.4%	intergenic (‑23/‑206)	ybiH ← / → rhlE	DUF1956 domain‑containing tetR family putative transcriptional regulator/ATP‑dependent RNA helicase
RA	830,667	T→C	5.8%	intergenic (‑24/‑205)	ybiH ← / → rhlE	DUF1956 domain‑containing tetR family putative transcriptional regulator/ATP‑dependent RNA helicase
RA	830,668	G→A	5.8%	intergenic (‑25/‑204)	ybiH ← / → rhlE	DUF1956 domain‑containing tetR family putative transcriptional regulator/ATP‑dependent RNA helicase
RA	830,669	A→T	5.4%	intergenic (‑26/‑203)	ybiH ← / → rhlE	DUF1956 domain‑containing tetR family putative transcriptional regulator/ATP‑dependent RNA helicase
RA	847,213	A→T	5.4%	intergenic (‑94/+45)	glnP ← / ← glnH	glutamine transporter subunit/glutamine transporter subunit
RA	847,214	T→A	6.0%	intergenic (‑95/+44)	glnP ← / ← glnH	glutamine transporter subunit/glutamine transporter subunit
RA	847,215	A→T	5.4%	intergenic (‑96/+43)	glnP ← / ← glnH	glutamine transporter subunit/glutamine transporter subunit
RA	848,356	T→A	5.1%	intergenic (‑352/+52)	glnH ← / ← dps	glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein
RA	852,857	A→C	10.8%	intergenic (‑260/+12)	opgE ← / ← mntS	OPG biosynthetic transmembrane phosphoethanolamine transferase/Mn(2)‑response protein, MntR‑repressed
RA	852,858	C→G	10.0%	intergenic (‑261/+11)	opgE ← / ← mntS	OPG biosynthetic transmembrane phosphoethanolamine transferase/Mn(2)‑response protein, MntR‑repressed
RA	852,861	C→G	10.0%	intergenic (‑264/+8)	opgE ← / ← mntS	OPG biosynthetic transmembrane phosphoethanolamine transferase/Mn(2)‑response protein, MntR‑repressed
RA	852,862	G→T	10.0%	intergenic (‑265/+7)	opgE ← / ← mntS	OPG biosynthetic transmembrane phosphoethanolamine transferase/Mn(2)‑response protein, MntR‑repressed
RA	854,790	T→C	9.0%	intergenic (+25/+34)	ybiR → / ← ldtB	putative transporter/L,D‑transpeptidase linking Lpp to murein
RA	854,792	A→C	7.9%	intergenic (+27/+32)	ybiR → / ← ldtB	putative transporter/L,D‑transpeptidase linking Lpp to murein
RA	854,793	T→A	8.3%	intergenic (+28/+31)	ybiR → / ← ldtB	putative transporter/L,D‑transpeptidase linking Lpp to murein
RA	854,794	G→T	7.5%	intergenic (+29/+30)	ybiR → / ← ldtB	putative transporter/L,D‑transpeptidase linking Lpp to murein
RA	854,796	G→A	7.5%	intergenic (+31/+28)	ybiR → / ← ldtB	putative transporter/L,D‑transpeptidase linking Lpp to murein
RA	857,576	T→C	10.7%	intergenic (+21/+220)	ybiT → / ← ybiU	ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA	857,578	C→G	11.3%	intergenic (+23/+218)	ybiT → / ← ybiU	ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA	857,580	G→A	10.5%	intergenic (+25/+216)	ybiT → / ← ybiU	ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA	860,151	A→G	6.1%	intergenic (‑123/+23)	ybiV ← / ← ybiW	sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA	860,154	A→T	6.1%	intergenic (‑126/+20)	ybiV ← / ← ybiW	sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA	887,392	T→A	11.5%	intergenic (‑53/‑31)	ybjJ ← / → rcdA	putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA	887,393	T→A	11.5%	intergenic (‑54/‑30)	ybjJ ← / → rcdA	putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA	892,455	G→C	7.3%	V163V (GTG→GTC)	rimK →	ribosomal protein S6 modification protein
RA	892,457	T→A	7.4%	I164N (ATT→AAT)	rimK →	ribosomal protein S6 modification protein
RA	892,459	G→C	7.4%	D165H (GAC→CAC)	rimK →	ribosomal protein S6 modification protein
RA	899,707	C→T	5.8%	intergenic (+62/+137)	rlmC → / ← artJ	23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein
RA	900,707	T→C	5.5%	intergenic (‑132/+159)	artJ ← / ← artM	arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease
RA	900,708	T→C	5.5%	intergenic (‑133/+158)	artJ ← / ← artM	arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease
RA	900,710	G→C	5.2%	intergenic (‑135/+156)	artJ ← / ← artM	arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease
RA	900,712	G→A	5.6%	intergenic (‑137/+154)	artJ ← / ← artM	arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease
RA	900,713	G→A	5.6%	intergenic (‑138/+153)	artJ ← / ← artM	arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease
RA	915,080	G→C	5.7%	intergenic (‑223/+272)	ybjE ← / ← aqpZ	putative transporter/aquaporin Z
RA	915,081	G→C	7.0%	intergenic (‑224/+271)	ybjE ← / ← aqpZ	putative transporter/aquaporin Z
RA	915,332	C→T	5.8%	intergenic (‑475/+20)	ybjE ← / ← aqpZ	putative transporter/aquaporin Z
RA	922,314:1	+C	7.3%	intergenic (+21/+52)	macB → / ← cspD	macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog
RA	925,574	T→C	10.3%	intergenic (+34/+310)	clpA → / ← serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
RA	925,578	G→T	10.3%	intergenic (+38/+306)	clpA → / ← serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
RA	925,579	A→T	10.3%	intergenic (+39/+305)	clpA → / ← serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
RA	925,580	A→T	11.8%	intergenic (+40/+304)	clpA → / ← serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
RA	925,581	A→C	10.3%	intergenic (+41/+303)	clpA → / ← serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
RA	925,585	G→A	10.3%	intergenic (+45/+299)	clpA → / ← serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
RA	950,313	C→T	8.0%	intergenic (+55/+27)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase/pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase
RA	950,314	A→T	8.1%	intergenic (+56/+26)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase/pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase
RA	950,317	A→T	9.4%	intergenic (+59/+23)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase/pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase
RA	950,318	A→G	8.1%	intergenic (+60/+22)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase/pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase
RA	950,646	A→G	6.1%	V145V (GTT→GTC) ‡	pflA ←	pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase
RA	950,647	A→T	5.9%	V145D (GTT→GAT) ‡	pflA ←	pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase
RA	950,648	C→T	5.9%	V145I (GTT→ATT) ‡	pflA ←	pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase
RA	963,761	T→C	7.6%	intergenic (+93/‑67)	rpsA → / → ihfB	30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit
RA	963,762	A→G	7.6%	intergenic (+94/‑66)	rpsA → / → ihfB	30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit
RA	963,763	C→T	7.5%	intergenic (+95/‑65)	rpsA → / → ihfB	30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit
RA	963,764	G→A	7.4%	intergenic (+96/‑64)	rpsA → / → ihfB	30S ribosomal subunit protein S1/integration host factor (IHF), DNA‑binding protein, beta subunit
RA	964,150	T→A	5.2%	intergenic (+38/‑170)	ihfB → / → ycaI	integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA	985,853	C→T	7.7%	intergenic (‑144/+41)	aspC ← / ← ompF	aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F)
RA	985,854	A→T	7.2%	intergenic (‑145/+40)	aspC ← / ← ompF	aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F)
RA	985,855	A→T	7.6%	intergenic (‑146/+39)	aspC ← / ← ompF	aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F)
RA	985,856	A→G	7.8%	intergenic (‑147/+38)	aspC ← / ← ompF	aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F)
RA	986,410	A→C	6.3%	S191S (TCT→TCG) ‡	ompF ←	outer membrane porin 1a (Ia;b;F)
RA	986,411	G→T	6.0%	S191Y (TCT→TAT) ‡	ompF ←	outer membrane porin 1a (Ia;b;F)
RA	987,418	A→T	10.0%	intergenic (‑436/+167)	ompF ← / ← asnS	outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA	987,420	A→C	10.8%	intergenic (‑438/+165)	ompF ← / ← asnS	outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA	987,421	A→T	10.8%	intergenic (‑439/+164)	ompF ← / ← asnS	outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA	987,422	G→T	11.2%	intergenic (‑440/+163)	ompF ← / ← asnS	outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA	987,424	A→T	10.4%	intergenic (‑442/+161)	ompF ← / ← asnS	outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA	993,254	A→G	7.4%	intergenic (+20/+23)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA	993,255	A→C	7.4%	intergenic (+21/+22)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA	993,258	G→T	7.7%	intergenic (+24/+19)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA	993,259	C→T	7.7%	intergenic (+25/+18)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA	998,448	T→A	5.8%	intergenic (+41/‑42)	elfA → / → elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
RA	998,449	G→A	5.7%	intergenic (+42/‑41)	elfA → / → elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
RA	998,450	T→C	5.7%	intergenic (+43/‑40)	elfA → / → elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
RA	998,451	T→A	6.4%	intergenic (+44/‑39)	elfA → / → elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
RA	1,006,113	C→A	5.4%	A54A (GCC→GCA)	zapC →	FtsZ stabilizer
RA	1,015,912	T→A	9.8%	intergenic (+30/+40)	rmf → / ← fabA	ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase
RA	1,018,983	A→T	6.2%	intergenic (+46/+30)	matP → / ← ompA	Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA	1,018,986	A→T	5.4%	intergenic (+49/+27)	matP → / ← ompA	Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA	1,026,538	G→A	9.7%	intergenic (+13/+19)	helD → / ← mgsA	DNA helicase IV/methylglyoxal synthase
RA	1,026,539	T→A	10.7%	intergenic (+14/+18)	helD → / ← mgsA	DNA helicase IV/methylglyoxal synthase
RA	1,026,540	T→A	9.9%	intergenic (+15/+17)	helD → / ← mgsA	DNA helicase IV/methylglyoxal synthase
RA	1,026,541	T→C	10.0%	intergenic (+16/+16)	helD → / ← mgsA	DNA helicase IV/methylglyoxal synthase
RA	1,033,118	T→G	6.8%	V327G (GTC→GGC)	hyaA →	hydrogenase 1, small subunit
RA	1,052,257	C→T	5.6%	intergenic (+17/+32)	gnsA → / ← yccM	putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA	1,052,260	T→C	5.6%	intergenic (+20/+29)	gnsA → / ← yccM	putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA	1,052,261	G→A	5.6%	intergenic (+21/+28)	gnsA → / ← yccM	putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA	1,052,264	A→G	5.7%	intergenic (+24/+25)	gnsA → / ← yccM	putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA	1,064,160	T→C	12.5%	L42P (CTG→CCG) ‡	yccE →	uncharacterized protein
RA	1,064,161	G→A	12.7%	L42L (CTG→CTA) ‡	yccE →	uncharacterized protein
RA	1,070,878	T→A	5.0%	T26T (ACA→ACT)	rutE ←	putative malonic semialdehyde reductase
RA	1,100,789	G→T	5.9%	intergenic (+2/+62)	ycdZ → / ← csgG	DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA	1,100,791	G→C	5.9%	intergenic (+4/+60)	ycdZ → / ← csgG	DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA	1,100,793	A→C	6.3%	intergenic (+6/+58)	ycdZ → / ← csgG	DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA	1,134,661	A→G	5.2%	intergenic (+104/‑68)	flgF → / → flgG	flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod
RA	1,134,662	A→C	5.3%	intergenic (+105/‑67)	flgF → / → flgG	flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod
RA	1,134,675	G→T	5.0%	intergenic (+118/‑54)	flgF → / → flgG	flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod
RA	1,134,676	C→T	5.1%	intergenic (+119/‑53)	flgF → / → flgG	flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod
RA	1,136,026	G→T	10.1%	V155L (GTA→TTA) ‡	flgH →	flagellar protein of basal‑body outer‑membrane L ring
RA	1,136,027	T→A	11.2%	V155E (GTA→GAA) ‡	flgH →	flagellar protein of basal‑body outer‑membrane L ring
RA	1,136,028	A→C	10.3%	V155V (GTA→GTC) ‡	flgH →	flagellar protein of basal‑body outer‑membrane L ring
RA	1,147,980	G→T	10.0%	K120N (AAG→AAT)	plsX →	putative phosphate acyltransferase
RA	1,147,986	G→C	9.5%	L122L (CTG→CTC)	plsX →	putative phosphate acyltransferase
RA	1,147,987	G→C	9.5%	E123Q (GAG→CAG)	plsX →	putative phosphate acyltransferase
RA	1,147,993	A→C	8.9%	I125L (ATT→CTT)	plsX →	putative phosphate acyltransferase
RA	1,150,621	C→G	5.0%	N298K (AAC→AAG)	fabD →	malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
RA	1,150,624	A→T	5.6%	E299D (GAA→GAT)	fabD →	malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
RA	1,151,286	C→T	5.7%	A206V (GCG→GTG)	fabG →	3‑oxoacyl‑[acyl‑carrier‑protein] reductase
RA	1,151,288	G→C	5.8%	G207R (GGT→CGT) ‡	fabG →	3‑oxoacyl‑[acyl‑carrier‑protein] reductase
RA	1,151,290	T→C	5.7%	G207G (GGT→GGC) ‡	fabG →	3‑oxoacyl‑[acyl‑carrier‑protein] reductase
RA	1,151,295	T→G	5.8%	L209R (CTC→CGC)	fabG →	3‑oxoacyl‑[acyl‑carrier‑protein] reductase
RA	1,153,208	T→C	7.7%	intergenic (+28/‑92)	fabF → / → pabC	3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA	1,153,213	T→A	8.0%	intergenic (+33/‑87)	fabF → / → pabC	3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA	1,153,214	T→A	8.1%	intergenic (+34/‑86)	fabF → / → pabC	3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA	1,153,219	G→A	8.3%	intergenic (+39/‑81)	fabF → / → pabC	3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA	1,157,629	G→C	5.4%	intergenic (+55/‑240)	ycfH → / → ptsG	putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component
RA	1,157,632	A→T	5.4%	intergenic (+58/‑237)	ycfH → / → ptsG	putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component
RA	1,157,633	A→T	5.5%	intergenic (+59/‑236)	ycfH → / → ptsG	putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component
RA	1,157,636	G→C	6.2%	intergenic (+62/‑233)	ycfH → / → ptsG	putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component
RA	1,159,335	G→T	7.5%	intergenic (+33/+27)	ptsG → / ← fhuE	fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA	1,159,336	A→C	6.9%	intergenic (+34/+26)	ptsG → / ← fhuE	fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA	1,169,380	T→C	5.5%	intergenic (+50/+32)	bhsA → / ← ldtC	biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA	1,169,382	C→G	5.6%	intergenic (+52/+30)	bhsA → / ← ldtC	biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA	1,169,384	G→A	5.9%	intergenic (+54/+28)	bhsA → / ← ldtC	biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA	1,175,524	G→C	5.1%	G33A (GGC→GCC)	lolC →	lipoprotein‑releasing system transmembrane protein
RA	1,175,528	T→C	5.1%	I34I (ATT→ATC)	lolC →	lipoprotein‑releasing system transmembrane protein
RA	1,181,760	A→G	9.9%	intergenic (‑35/+23)	ymfA ← / ← potD	DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein
RA	1,181,761	A→G	9.9%	intergenic (‑36/+22)	ymfA ← / ← potD	DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein
RA	1,181,764	C→T	10.1%	intergenic (‑39/+19)	ymfA ← / ← potD	DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein
RA	1,181,765	C→T	10.1%	intergenic (‑40/+18)	ymfA ← / ← potD	DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein
RA	1,187,084	C→T	5.7%	intergenic (+14/+35)	pepT → / ← roxA	peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase
RA	1,187,090	G→C	7.8%	intergenic (+20/+29)	pepT → / ← roxA	peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase
RA	1,187,091	T→A	7.0%	intergenic (+21/+28)	pepT → / ← roxA	peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase
RA	1,187,092	G→C	7.8%	intergenic (+22/+27)	pepT → / ← roxA	peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase
RA	1,196,408	A→T	13.1%	intergenic (+35/+459)	icd → / ← ymfD	isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
RA	1,196,803	A→C	10.0%	intergenic (+430/+64)	icd → / ← ymfD	isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
RA	1,196,804	G→T	10.9%	intergenic (+431/+63)	icd → / ← ymfD	isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
RA	1,199,673	A→T	5.7%	intergenic (+85/+6)	lit → / ← intE	T4 phage exclusion protein; cell death peptidase, e14 prophage/e14 prophage; putative integrase
RA	1,199,678	T→A	5.3%	intergenic (+90/+1)	lit → / ← intE	T4 phage exclusion protein; cell death peptidase, e14 prophage/e14 prophage; putative integrase
RA	1,199,681	A→T	5.5%	*376R (TGA→AGA)	intE ←	e14 prophage; putative integrase
RA	1,200,910	T→A	5.5%	Q41H (CAA→CAT)	xisE ←	e14 prophage; putative excisionase
RA	1,200,913	T→A	5.8%	K40N (AAA→AAT) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,914	T→A	5.7%	K40I (AAA→ATA) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,915	T→A	5.4%	K40* (AAA→TAA) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,918	T→A	5.8%	M39L (ATG→TTG)	xisE ←	e14 prophage; putative excisionase
RA	1,202,957	G→T	7.8%	intergenic (‑24/‑67)	cohE ← / → croE	e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator
RA	1,202,959	T→A	7.9%	intergenic (‑26/‑65)	cohE ← / → croE	e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator
RA	1,202,961	A→C	8.0%	intergenic (‑28/‑63)	cohE ← / → croE	e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator
RA	1,204,408	G→A	5.5%	pseudogene (5/1134 nt)	aaaE →	pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related
RA	1,204,409	T→A	7.4%	pseudogene (6/1134 nt)	aaaE →	pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related
RA	1,204,410	T→C	5.8%	pseudogene (7/1134 nt)	aaaE →	pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related
RA	1,205,787	A→T	5.3%	pseudogene (57/412 nt)	beeE →	pseudogene, portal protein family, e14 prophage;Phage or Prophage Related
RA	1,205,788	G→C	5.3%	pseudogene (58/412 nt)	beeE →	pseudogene, portal protein family, e14 prophage;Phage or Prophage Related
RA	1,205,789	A→T	5.2%	pseudogene (59/412 nt)	beeE →	pseudogene, portal protein family, e14 prophage;Phage or Prophage Related
RA	1,211,610	A→G	7.0%	intergenic (+33/+70)	icdC → / ← iraM	pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA	1,211,612	A→T	7.5%	intergenic (+35/+68)	icdC → / ← iraM	pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA	1,211,614	C→T	6.6%	intergenic (+37/+66)	icdC → / ← iraM	pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA	1,212,470	A→C	7.6%	intergenic (‑467/+233)	iraM ← / ← ycgX	RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
RA	1,212,475	T→C	7.5%	intergenic (‑472/+228)	iraM ← / ← ycgX	RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
RA	1,212,476	G→C	7.2%	intergenic (‑473/+227)	iraM ← / ← ycgX	RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
RA	1,212,477	G→A	7.2%	intergenic (‑474/+226)	iraM ← / ← ycgX	RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
RA	1,212,482	G→T	6.9%	intergenic (‑479/+221)	iraM ← / ← ycgX	RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
RA	1,223,929	T→C	6.1%	intergenic (+22/+350)	ycgI → / ← minE	pseudogene/cell division topological specificity factor
RA	1,223,930	T→G	6.1%	intergenic (+23/+349)	ycgI → / ← minE	pseudogene/cell division topological specificity factor
RA	1,223,931	C→A	6.1%	intergenic (+24/+348)	ycgI → / ← minE	pseudogene/cell division topological specificity factor
RA	1,223,932	G→A	6.0%	intergenic (+25/+347)	ycgI → / ← minE	pseudogene/cell division topological specificity factor
RA	1,224,242	A→T	7.2%	intergenic (+335/+37)	ycgI → / ← minE	pseudogene/cell division topological specificity factor
RA	1,226,114	C→G	6.2%	intergenic (‑34/‑486)	minC ← / → ycgJ	inhibitor of FtsZ ring polymerization/uncharacterized protein
RA	1,226,115	A→C	9.3%	intergenic (‑35/‑485)	minC ← / → ycgJ	inhibitor of FtsZ ring polymerization/uncharacterized protein
RA	1,226,118	G→T	6.0%	intergenic (‑38/‑482)	minC ← / → ycgJ	inhibitor of FtsZ ring polymerization/uncharacterized protein
RA	1,226,119	C→G	6.6%	intergenic (‑39/‑481)	minC ← / → ycgJ	inhibitor of FtsZ ring polymerization/uncharacterized protein
RA	1,226,832	T→G	6.4%	F78C (TTT→TGT)	ycgJ →	uncharacterized protein
RA	1,226,835	C→A	6.4%	T79K (ACA→AAA)	ycgJ →	uncharacterized protein
RA	1,232,481	C→T	5.3%	intergenic (+27/+19)	umuC → / ← dsbB	translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA	1,232,484	A→G	5.3%	intergenic (+30/+16)	umuC → / ← dsbB	translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA	1,235,686	A→G	9.6%	intergenic (+29/+23)	fadR → / ← ycgB	fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein
RA	1,235,687	A→T	9.4%	intergenic (+30/+22)	fadR → / ← ycgB	fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein
RA	1,235,688	A→T	9.4%	intergenic (+31/+21)	fadR → / ← ycgB	fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein
RA	1,235,689	C→T	10.8%	intergenic (+32/+20)	fadR → / ← ycgB	fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein
RA	1,273,229	A→T	8.5%	intergenic (+27/+17)	chaC → / ← ychN	cation transport regulator/putative sulfur relay protein
RA	1,285,190	T→A	8.3%	L18I (TTA→ATA)	narJ →	molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1
RA	1,285,193	T→A	8.3%	W19R (TGG→AGG)	narJ →	molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1
RA	1,286,965	A→G	10.6%	intergenic (+439/+101)	narI → / ← rttR	nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript
RA	1,287,673	A→G	5.5%	intergenic (‑51/+109)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate hydrolase
RA	1,287,678	A→T	6.3%	intergenic (‑56/+104)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate hydrolase
RA	1,287,680	C→G	7.0%	intergenic (‑58/+102)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate hydrolase
RA	1,287,682	A→T	5.8%	intergenic (‑60/+100)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate hydrolase
RA	1,287,687	C→T	5.1%	intergenic (‑65/+95)	tyrT ← / ← purU	tRNA‑Tyr/formyltetrahydrofolate hydrolase
RA	1,292,398	T→C	6.2%	intergenic (+33/+111)	galU → / ← hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA	1,292,401	G→T	5.6%	intergenic (+36/+108)	galU → / ← hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA	1,292,402	C→T	5.1%	intergenic (+37/+107)	galU → / ← hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA	1,292,403	A→G	5.1%	intergenic (+38/+106)	galU → / ← hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA	1,292,404	A→C	5.1%	intergenic (+39/+105)	galU → / ← hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA	1,299,267:1	+A	7.6%	intergenic (+22/‑1915)	ychE → / → oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
RA	1,299,270	C→G	7.2%	intergenic (+25/‑1912)	ychE → / → oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
RA	1,299,273	Δ1 bp	7.3%	intergenic (+28/‑1909)	ychE → / → oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
MC JC	1,299,499	Δ1,199 bp	100%	intergenic (+254/‑485)	ychE → / → oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
RA	1,306,787	G→A	12.8%	intergenic (+19/+34)	oppF → / ← yciU	oligopeptide ABC transporter ATPase/UPF0263 family protein
RA	1,306,788	T→C	13.0%	intergenic (+20/+33)	oppF → / ← yciU	oligopeptide ABC transporter ATPase/UPF0263 family protein
RA	1,311,285	A→C	7.1%	E66A (GAG→GCG) ‡	tonB →	membrane spanning protein in TonB‑ExbB‑ExbD transport complex
RA	1,311,286	G→T	5.8%	E66D (GAG→GAT) ‡	tonB →	membrane spanning protein in TonB‑ExbB‑ExbD transport complex
RA	1,311,830	A→G	6.6%	intergenic (+22/+18)	tonB → / ← yciA	membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA	1,311,831	C→T	6.5%	intergenic (+23/+17)	tonB → / ← yciA	membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA	1,314,682	A→T	12.5%	intergenic (+24/+36)	ompW → / ← yciE	outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
RA	1,314,683	T→A	12.5%	intergenic (+25/+35)	ompW → / ← yciE	outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
RA	1,314,684	A→T	12.5%	intergenic (+26/+34)	ompW → / ← yciE	outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
RA	1,319,210	C→A	6.4%	S193S (TCG→TCT)	trpC ←	indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase
RA	1,324,837	A→C	7.6%	Y31S (TAT→TCT) ‡	yciQ →	enhancer of membrane protein expression; putative inner membrane protein
RA	1,324,838	T→A	6.5%	Y31* (TAT→TAA) ‡	yciQ →	enhancer of membrane protein expression; putative inner membrane protein
RA	1,324,839	G→T	7.4%	E32* (GAA→TAA)	yciQ →	enhancer of membrane protein expression; putative inner membrane protein
RA	1,327,213	C→T	10.4%	T121I (ACC→ATC)	rluB →	23S rRNA pseudouridine(2605) synthase
RA	1,327,216	A→G	9.6%	D122G (GAT→GGT)	rluB →	23S rRNA pseudouridine(2605) synthase
RA	1,330,396:1	+T	7.6%	intergenic (+15/+21)	sohB → / ← yciN	inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN
RA	1,330,399	A→T	6.7%	intergenic (+18/+18)	sohB → / ← yciN	inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN
RA	1,330,402	Δ1 bp	7.5%	intergenic (+21/+15)	sohB → / ← yciN	inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN
RA	1,344,033	A→G	8.1%	L105P (CTG→CCG)	yciT ←	global regulator of transcription; DeoR family
RA	1,344,036	G→C	8.6%	T104S (ACT→AGT)	yciT ←	global regulator of transcription; DeoR family
RA	1,344,039	C→T	8.1%	R103Q (CGG→CAG)	yciT ←	global regulator of transcription; DeoR family
RA	1,357,224	G→A	5.2%	intergenic (‑114/+199)	sapA ← / ← ymjA	antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein
RA	1,357,227	A→G	5.1%	intergenic (‑117/+196)	sapA ← / ← ymjA	antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein
RA	1,357,230	T→A	5.0%	intergenic (‑120/+193)	sapA ← / ← ymjA	antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein
RA	1,376,952	T→A	5.2%	C41S (TGT→AGT) ‡	ycjS →	putative NADH‑binding oxidoreductase
RA	1,376,953	G→C	6.0%	C41S (TGT→TCT) ‡	ycjS →	putative NADH‑binding oxidoreductase
RA	1,376,954	T→A	5.2%	C41* (TGT→TGA) ‡	ycjS →	putative NADH‑binding oxidoreductase
RA	1,388,283	C→T	9.6%	intergenic (+22/+22)	tyrR → / ← tpx	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA	1,388,284	A→T	9.2%	intergenic (+23/+21)	tyrR → / ← tpx	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA	1,388,285	A→G	11.5%	intergenic (+24/+20)	tyrR → / ← tpx	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA	1,409,557	C→T	5.8%	T16M (ACG→ATG) ‡	dbpA →	ATP‑dependent RNA helicase, specific for 23S rRNA
RA	1,409,558	G→T	6.5%	T16T (ACG→ACT) ‡	dbpA →	ATP‑dependent RNA helicase, specific for 23S rRNA
RA	1,409,561	C→G	5.6%	N17K (AAC→AAG)	dbpA →	ATP‑dependent RNA helicase, specific for 23S rRNA
RA	1,409,562	C→G	5.3%	L18V (CTT→GTT)	dbpA →	ATP‑dependent RNA helicase, specific for 23S rRNA
RA	1,409,565	A→C	5.7%	N19H (AAT→CAT) ‡	dbpA →	ATP‑dependent RNA helicase, specific for 23S rRNA
RA	1,409,566	A→G	5.7%	N19S (AAT→AGT) ‡	dbpA →	ATP‑dependent RNA helicase, specific for 23S rRNA
RA	1,411,844	C→A	5.3%	M35I (ATG→ATT) ‡	ttcA ←	tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
RA	1,411,845	A→T	5.4%	M35K (ATG→AAG) ‡	ttcA ←	tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
RA	1,411,846	T→G	5.4%	M35L (ATG→CTG) ‡	ttcA ←	tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
RA	1,413,029	G→C	7.9%	S69R (AGC→AGG) ‡	intR ←	Rac prophage; integrase
RA	1,413,031	T→A	6.9%	S69C (AGC→TGC) ‡	intR ←	Rac prophage; integrase
RA	1,413,033	G→C	6.8%	S68C (TCC→TGC)	intR ←	Rac prophage; integrase
RA	1,413,964	C→T	5.9%	intergenic (‑37/+20)	ralR ← / ← recT	Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA	1,413,966	T→A	5.8%	intergenic (‑39/+18)	ralR ← / ← recT	Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA	1,413,968	A→G	6.0%	intergenic (‑41/+16)	ralR ← / ← recT	Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA	1,417,469	C→A	7.3%	intergenic (‑83/+19)	recE ← / ← racC	Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
RA	1,426,417	T→C	12.6%	intergenic (+335/‑37)	ydaY → / → tmpR	pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA	1,426,418	T→G	12.0%	intergenic (+336/‑36)	ydaY → / → tmpR	pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA	1,426,421	C→A	12.1%	intergenic (+339/‑33)	ydaY → / → tmpR	pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA	1,426,422	G→A	12.5%	intergenic (+340/‑32)	ydaY → / → tmpR	pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA	1,429,564	C→T	5.3%	S172S (AGC→AGT)	stfR →	Rac prophage; putative tail fiber protein
RA	1,438,800	T→C	7.5%	D662G (GAC→GGC)	pfo ←	pyruvate‑flavodoxin oxidoreductase
RA	1,438,802	T→A	7.5%	P661P (CCA→CCT) ‡	pfo ←	pyruvate‑flavodoxin oxidoreductase
RA	1,438,804	G→A	7.5%	P661S (CCA→TCA) ‡	pfo ←	pyruvate‑flavodoxin oxidoreductase
RA	1,446,357:1	+T	8.6%	intergenic (+151/+21)	ydbL → / ← feaR	DUF1318 family protein/transcriptional activator for tynA and feaB
RA	1,446,362	Δ1 bp	7.7%	intergenic (+156/+16)	ydbL → / ← feaR	DUF1318 family protein/transcriptional activator for tynA and feaB
RA	1,446,785	T→A	7.4%	T167S (ACA→TCA)	feaR ←	transcriptional activator for tynA and feaB
RA	1,446,786	T→A	7.4%	E166D (GAA→GAT) ‡	feaR ←	transcriptional activator for tynA and feaB
RA	1,446,787	T→A	6.7%	E166V (GAA→GTA) ‡	feaR ←	transcriptional activator for tynA and feaB
RA	1,449,050	T→A	6.6%	intergenic (+32/+26)	feaB → / ← tynA	phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring
RA	1,457,528	G→A	6.9%	R11Q (CGA→CAA)	paaF →	2,3‑dehydroadipyl‑CoA hydratase
RA	1,466,336	C→G	7.4%	pseudogene (945/2513 nt)	ydbA →	pseudogene, autotransporter homolog; interrupted by IS2 and IS30
RA	1,475,548	A→C	5.7%	A135A (GCA→GCC)	ydbD →	PF10971 family putative periplasmic methylglyoxal resistance protein
RA	1,475,557	G→T	6.8%	L138L (CTG→CTT)	ydbD →	PF10971 family putative periplasmic methylglyoxal resistance protein
RA	1,488,050	T→C	7.0%	intergenic (+15/‑182)	ydcF → / → aldA	DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked
RA	1,488,051	G→A	7.2%	intergenic (+16/‑181)	ydcF → / → aldA	DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked
RA	1,488,055	C→A	6.9%	intergenic (+20/‑177)	ydcF → / → aldA	DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked
RA	1,488,057	C→G	6.7%	intergenic (+22/‑175)	ydcF → / → aldA	DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked
RA	1,488,059	T→G	6.7%	intergenic (+24/‑173)	ydcF → / → aldA	DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked
RA	1,488,063	T→C	6.7%	intergenic (+28/‑169)	ydcF → / → aldA	DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked
RA	1,488,064	G→A	6.7%	intergenic (+29/‑168)	ydcF → / → aldA	DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked
RA	1,499,361	A→G	10.1%	N142D (AAC→GAC)	rimL →	ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA	1,499,365	A→T	11.6%	Q143L (CAG→CTG)	rimL →	ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA	1,499,369	C→T	11.7%	V144V (GTC→GTT)	rimL →	ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA	1,516,403	G→C	5.9%	A276P (GCT→CCT)	patD →	gamma‑aminobutyraldehyde dehydrogenase
RA	1,516,407	G→T	7.7%	G277V (GGA→GTA) ‡	patD →	gamma‑aminobutyraldehyde dehydrogenase
RA	1,516,408	A→C	5.5%	G277G (GGA→GGC) ‡	patD →	gamma‑aminobutyraldehyde dehydrogenase
RA	1,516,412	G→C	5.8%	D279H (GAT→CAT)	patD →	gamma‑aminobutyraldehyde dehydrogenase
RA	1,521,276	A→G	5.3%	M597T (ATG→ACG)	yncD ←	putative iron outer membrane transporter
RA	1,521,279	T→A	5.4%	N596I (AAT→ATT)	yncD ←	putative iron outer membrane transporter
RA	1,521,282	C→T	5.2%	R595H (CGT→CAT)	yncD ←	putative iron outer membrane transporter
RA	1,528,193	G→C	8.1%	pseudogene (292/2037 nt)	rhsE →	pseudogene, Rhs family
RA	1,528,194	A→T	8.1%	pseudogene (293/2037 nt)	rhsE →	pseudogene, Rhs family
RA	1,528,195	G→C	8.1%	pseudogene (294/2037 nt)	rhsE →	pseudogene, Rhs family
RA	1,541,077	G→C	7.1%	A505G (GCC→GGC)	narZ ←	nitrate reductase 2 (NRZ), alpha subunit
RA	1,543,229	G→T	6.9%	L278M (CTG→ATG)	narU ←	nitrate/nitrite transporter
RA	1,543,230	C→G	7.9%	M277I (ATG→ATC) ‡	narU ←	nitrate/nitrite transporter
RA	1,543,231	A→C	7.3%	M277R (ATG→AGG) ‡	narU ←	nitrate/nitrite transporter
RA	1,550,656	T→A	6.6%	Y66N (TAC→AAC) ‡	fdnH →	formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible
RA	1,550,657	A→T	6.3%	Y66F (TAC→TTC) ‡	fdnH →	formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible
RA	1,550,660	A→T	5.9%	D67V (GAT→GTT) ‡	fdnH →	formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible
RA	1,550,661	T→A	6.4%	D67E (GAT→GAA) ‡	fdnH →	formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible
RA	1,557,343	C→T	5.8%	T232T (ACG→ACA)	ddpF ←	D,D‑dipeptide ABC transporter ATPase
RA	1,557,347	A→G	5.5%	L231P (CTG→CCG)	ddpF ←	D,D‑dipeptide ABC transporter ATPase
RA	1,568,915	G→A	8.8%	intergenic (‑92/+39)	yddW ← / ← gadC	liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter
RA	1,568,917	A→T	8.5%	intergenic (‑94/+37)	yddW ← / ← gadC	liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter
RA	1,568,919	T→C	8.8%	intergenic (‑96/+35)	yddW ← / ← gadC	liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter
RA	1,570,610	G→A	6.5%	intergenic (‑121/+35)	gadC ← / ← gadB	glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent
RA	1,570,611	G→A	6.6%	intergenic (‑122/+34)	gadC ← / ← gadB	glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent
RA	1,570,612	T→C	6.6%	intergenic (‑123/+33)	gadC ← / ← gadB	glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent
RA	1,570,613	T→C	6.5%	intergenic (‑124/+32)	gadC ← / ← gadB	glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent
RA	1,579,563	G→T	8.7%	intergenic (‑221/+70)	yddA ← / ← ydeM	putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA	1,579,564	G→A	8.6%	intergenic (‑222/+69)	yddA ← / ← ydeM	putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA	1,579,569	T→C	7.8%	intergenic (‑227/+64)	yddA ← / ← ydeM	putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA	1,579,570	A→C	8.4%	intergenic (‑228/+63)	yddA ← / ← ydeM	putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA	1,590,601	G→C	7.6%	intergenic (‑65/+253)	yneL ← / ← hipA	pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase
RA	1,596,499	C→A	5.7%	pseudogene (1489/3861 nt)	yneO ←	pseudogene, AidA homolog
RA	1,596,501	T→A	5.8%	pseudogene (1487/3861 nt)	yneO ←	pseudogene, AidA homolog
RA	1,596,503	T→G	6.3%	pseudogene (1485/3861 nt)	yneO ←	pseudogene, AidA homolog
RA	1,602,236	A→T	5.9%	Q249H (CAA→CAT)	lsrA →	autoinducer 2 import ATP‑binding protein
RA	1,602,239	A→T	7.2%	K250N (AAA→AAT)	lsrA →	autoinducer 2 import ATP‑binding protein
RA	1,602,242	A→T	5.9%	L251F (TTA→TTT)	lsrA →	autoinducer 2 import ATP‑binding protein
RA	1,609,555	Δ1 bp	6.5%	coding (1126/1452 nt)	uxaB ←	altronate oxidoreductase, NAD‑dependent
RA	1,609,561:1	+C	6.3%	coding (1120/1452 nt)	uxaB ←	altronate oxidoreductase, NAD‑dependent
RA	1,620,224	C→G	5.4%	intergenic (+17/+14)	marB → / ← eamA	periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system
RA	1,620,227	C→G	5.4%	intergenic (+20/+11)	marB → / ← eamA	periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system
RA	1,629,435	G→A	8.3%	intergenic (+17/+18)	ydfZ → / ← ydfI	selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase
RA	1,629,436	A→T	8.1%	intergenic (+18/+17)	ydfZ → / ← ydfI	selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase
RA	1,629,437	T→C	8.1%	intergenic (+19/+16)	ydfZ → / ← ydfI	selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase
RA	1,642,370	C→G	10.7%	intergenic (+303/+119)	cspF → / ← quuQ	Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA	1,642,373	C→G	10.7%	intergenic (+306/+116)	cspF → / ← quuQ	Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA	1,647,873	C→T	6.9%	intergenic (‑23/‑61)	dicC ← / → dicA	Qin prophage; DNA‑binding transcriptional regulator for DicB/Qin prophage; putative regulator for DicB
RA	1,647,876	A→G	7.7%	intergenic (‑26/‑58)	dicC ← / → dicA	Qin prophage; DNA‑binding transcriptional regulator for DicB/Qin prophage; putative regulator for DicB
RA	1,657,895	A→T	5.9%	intergenic (+25/‑174)	ynfD → / → ynfE	DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
RA	1,657,901	A→T	5.2%	intergenic (+31/‑168)	ynfD → / → ynfE	DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
RA	1,660,194	A→C	8.0%	K709T (AAG→ACG)	ynfE →	putative selenate reductase, periplasmic
RA	1,660,202	T→A	8.1%	C712S (TGC→AGC)	ynfE →	putative selenate reductase, periplasmic
RA	1,660,206	G→T	7.6%	R713L (CGT→CTT)	ynfE →	putative selenate reductase, periplasmic
RA	1,660,438	A→G	6.1%	S790S (TCA→TCG)	ynfE →	putative selenate reductase, periplasmic
RA	1,660,442	C→G	6.8%	L792V (CTG→GTG)	ynfE →	putative selenate reductase, periplasmic
RA	1,660,446	C→T	6.7%	A793V (GCG→GTG)	ynfE →	putative selenate reductase, periplasmic
RA	1,672,481	A→T	7.6%	A174A (GCA→GCT)	ydgD →	putative peptidase
RA	1,672,484	A→T	7.6%	L175F (TTA→TTT)	ydgD →	putative peptidase
RA	1,672,487	A→T	7.1%	K176N (AAA→AAT)	ydgD →	putative peptidase
RA	1,673,540	T→G	6.2%	intergenic (‑39/‑373)	mdtJ ← / → tqsA	multidrug efflux system transporter/pheromone AI‑2 transporter
RA	1,673,545	C→A	5.8%	intergenic (‑44/‑368)	mdtJ ← / → tqsA	multidrug efflux system transporter/pheromone AI‑2 transporter
RA	1,674,171	Δ1 bp	8.9%	coding (259/1035 nt)	tqsA →	pheromone AI‑2 transporter
RA	1,674,177	G→T	8.3%	E89* (GAG→TAG) ‡	tqsA →	pheromone AI‑2 transporter
RA	1,674,178	A→C	8.4%	E89A (GAG→GCG) ‡	tqsA →	pheromone AI‑2 transporter
RA	1,674,183:1	+G	7.4%	coding (271/1035 nt)	tqsA →	pheromone AI‑2 transporter
RA	1,674,955	A→T	8.0%	intergenic (+8/+17)	tqsA → / ← pntB	pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit
RA	1,674,958	A→T	7.6%	intergenic (+11/+14)	tqsA → / ← pntB	pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit
RA	1,682,899	C→A	6.2%	I6I (ATC→ATA)	rstB →	sensory histidine kinase of RstAB two‑component system
RA	1,689,821	T→G	5.0%	intergenic (+70/‑31)	manA → / → ydgA	mannose‑6‑phosphate isomerase/DUF945 family protein
RA	1,692,978	A→C	6.4%	L429R (CTC→CGC)	uidB ←	glucuronide transporter
RA	1,698,585	T→G	8.1%	E199A (GAA→GCA)	malI ←	transcriptional repressor of Mal regulon
RA	1,698,587	T→A	8.2%	A198A (GCA→GCT) ‡	malI ←	transcriptional repressor of Mal regulon
RA	1,698,589	C→A	7.6%	A198S (GCA→TCA) ‡	malI ←	transcriptional repressor of Mal regulon
RA	1,701,108	A→T	7.5%	N51I (AAT→ATT)	malY →	PLP‑dependent beta‑cystathionase and maltose regulon regulator
RA	1,703,251	A→T	10.5%	intergenic (+17/+17)	add → / ← ydgJ	adenosine deaminase/putative oxidoreductase
RA	1,703,252	A→T	10.5%	intergenic (+18/+16)	add → / ← ydgJ	adenosine deaminase/putative oxidoreductase
RA	1,715,919	T→G	8.0%	intergenic (‑30/+29)	pdxY ← / ← tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
RA	1,715,920	T→A	6.1%	intergenic (‑31/+28)	pdxY ← / ← tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
RA	1,715,921	T→A	7.3%	intergenic (‑32/+27)	pdxY ← / ← tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
RA	1,715,922	C→A	9.0%	intergenic (‑33/+26)	pdxY ← / ← tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
RA	1,724,610	C→T	5.8%	G16S (GGC→AGC)	sodC ←	superoxide dismutase, Cu, Zn, periplasmic
RA	1,724,616	C→T	6.0%	A14T (GCA→ACA)	sodC ←	superoxide dismutase, Cu, Zn, periplasmic
RA	1,724,617	A→T	5.9%	V13V (GTT→GTA) ‡	sodC ←	superoxide dismutase, Cu, Zn, periplasmic
RA	1,724,618	A→G	5.9%	V13A (GTT→GCT) ‡	sodC ←	superoxide dismutase, Cu, Zn, periplasmic
RA	1,724,624	A→G	6.4%	L11P (CTG→CCG)	sodC ←	superoxide dismutase, Cu, Zn, periplasmic
RA	1,726,510	T→G	6.3%	L163R (CTT→CGT)	nemR →	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
RA	1,726,512	T→A	5.5%	Y164N (TAC→AAC) ‡	nemR →	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
RA	1,726,514	C→A	5.4%	Y164* (TAC→TAA) ‡	nemR →	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
RA	1,743,155	C→G	7.3%	D30H (GAC→CAC)	ribC ←	riboflavin synthase, alpha subunit
RA	1,743,157	G→A	7.5%	P29L (CCC→CTC)	ribC ←	riboflavin synthase, alpha subunit
RA	1,743,160	A→T	7.6%	L28* (TTA→TAA)	ribC ←	riboflavin synthase, alpha subunit
RA	1,743,163	T→C	7.5%	E27G (GAG→GGG)	ribC ←	riboflavin synthase, alpha subunit
RA	1,743,165	C→G	8.6%	V26V (GTG→GTC)	ribC ←	riboflavin synthase, alpha subunit
RA	1,747,025	G→C	8.0%	intergenic (+20/‑106)	ydhR → / → ydhS	putative monooxygenase/putative oxidoreductase
RA	1,747,027	T→A	6.3%	intergenic (+22/‑104)	ydhR → / → ydhS	putative monooxygenase/putative oxidoreductase
RA	1,747,029	G→C	6.0%	intergenic (+24/‑102)	ydhR → / → ydhS	putative monooxygenase/putative oxidoreductase
RA	1,747,297	A→T	5.3%	N56I (AAT→ATT)	ydhS →	putative oxidoreductase
RA	1,747,299	A→T	5.3%	I57F (ATT→TTT)	ydhS →	putative oxidoreductase
RA	1,757,688	T→A	6.4%	intergenic (+31/+33)	lpp → / ← ldtE	murein lipoprotein/murein L,D‑transpeptidase
RA	1,763,609	A→G	5.5%	V134A (GTG→GCG)	sufB ←	component of SufBCD Fe‑S cluster assembly scaffold
RA	1,764,687	T→C	7.1%	intergenic (‑301/+26)	sufA ← / ← rydB	Fe‑S cluster assembly protein/novel sRNA, function unknown
RA	1,764,693	C→T	6.0%	intergenic (‑307/+20)	sufA ← / ← rydB	Fe‑S cluster assembly protein/novel sRNA, function unknown
RA	1,764,694	G→C	6.0%	intergenic (‑308/+19)	sufA ← / ← rydB	Fe‑S cluster assembly protein/novel sRNA, function unknown
RA	1,764,695	A→G	6.0%	intergenic (‑309/+18)	sufA ← / ← rydB	Fe‑S cluster assembly protein/novel sRNA, function unknown
RA	1,764,701	G→A	5.9%	intergenic (‑315/+12)	sufA ← / ← rydB	Fe‑S cluster assembly protein/novel sRNA, function unknown
RA	1,765,157	T→A	7.9%	intergenic (‑35/+65)	ydiH ← / ← menI	uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,160	C→G	7.9%	intergenic (‑38/+62)	ydiH ← / ← menI	uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,161	A→G	7.9%	intergenic (‑39/+61)	ydiH ← / ← menI	uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,162	C→T	7.9%	intergenic (‑40/+60)	ydiH ← / ← menI	uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,163	C→G	7.8%	intergenic (‑41/+59)	ydiH ← / ← menI	uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,166	T→A	9.7%	intergenic (‑44/+56)	ydiH ← / ← menI	uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,770,203	T→A	5.7%	intergenic (+17/‑169)	ydiK → / → rprA	UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent
RA	1,770,204	C→G	5.5%	intergenic (+18/‑168)	ydiK → / → rprA	UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent
RA	1,770,205	T→A	5.3%	intergenic (+19/‑167)	ydiK → / → rprA	UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent
RA	1,778,364	C→T	6.2%	intergenic (+17/+26)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA	1,778,367	C→G	6.2%	intergenic (+20/+23)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA	1,778,721	C→A	7.7%	R194L (CGC→CTC)	ydiP ←	putative DNA‑binding transcriptional regulator
RA	1,788,336	A→T	8.7%	intergenic (+58/‑99)	ppsR → / → aroH	PEP synthase kinase and PEP synthase pyrophosphorylase/3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible
RA	1,789,497	T→G	7.6%	intergenic (+16/‑116)	aroH → / → ydiE	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog
RA	1,789,498	G→T	5.7%	intergenic (+17/‑115)	aroH → / → ydiE	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog
RA	1,789,499	A→C	5.7%	intergenic (+18/‑114)	aroH → / → ydiE	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog
RA	1,792,240	T→A	10.6%	intergenic (‑220/+27)	ydiV ← / ← nlpC	anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
RA	1,792,241	A→T	10.8%	intergenic (‑221/+26)	ydiV ← / ← nlpC	anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
RA	1,792,242	T→A	10.2%	intergenic (‑222/+25)	ydiV ← / ← nlpC	anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
RA	1,795,227	A→T	9.6%	intergenic (‑75/+26)	btuC ← / ← ihfA	vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA	1,795,228	G→C	8.7%	intergenic (‑76/+25)	btuC ← / ← ihfA	vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA	1,795,229	A→T	8.8%	intergenic (‑77/+24)	btuC ← / ← ihfA	vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA	1,799,167	A→C	7.7%	intergenic (‑225/+59)	pheS ← / ← pheM	phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
RA	1,799,168	C→A	7.8%	intergenic (‑226/+58)	pheS ← / ← pheM	phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
RA	1,799,169	T→G	7.4%	intergenic (‑227/+57)	pheS ← / ← pheM	phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
RA	1,799,170	G→T	8.1%	intergenic (‑228/+56)	pheS ← / ← pheM	phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide
RA	1,799,370	Δ1 bp	6.5%	intergenic (‑100/+23)	pheM ← / ← rplT	phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA	1,799,374:1	+T	6.5%	intergenic (‑104/+19)	pheM ← / ← rplT	phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA	1,807,316	G→A	6.5%	intergenic (+17/‑84)	pfkB → / → ydiZ	6‑phosphofructokinase II/uncharacterized protein
RA	1,807,317	C→T	6.5%	intergenic (+18/‑83)	pfkB → / → ydiZ	6‑phosphofructokinase II/uncharacterized protein
RA	1,807,318	A→G	6.6%	intergenic (+19/‑82)	pfkB → / → ydiZ	6‑phosphofructokinase II/uncharacterized protein
RA	1,807,319	T→C	6.5%	intergenic (+20/‑81)	pfkB → / → ydiZ	6‑phosphofructokinase II/uncharacterized protein
RA	1,823,335	G→C	9.5%	intergenic (+50/‑180)	nadE → / → cho	NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair
RA	1,823,338	G→C	10.1%	intergenic (+53/‑177)	nadE → / → cho	NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair
RA	1,825,936	T→A	5.8%	intergenic (‑311/+19)	spy ← / ← astE	periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase
RA	1,825,937	G→T	6.2%	intergenic (‑312/+18)	spy ← / ← astE	periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase
RA	1,825,938	A→C	6.2%	intergenic (‑313/+17)	spy ← / ← astE	periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase
RA	1,825,939	T→A	6.2%	intergenic (‑314/+16)	spy ← / ← astE	periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase
RA	1,829,322	A→C	5.0%	L138R (CTG→CGG)	astD ←	succinylglutamic semialdehyde dehydrogenase
RA	1,836,904	A→G	7.6%	S278G (AGC→GGC) ‡	ynjB →	putative ABC transporter periplasmic binding protein
RA	1,836,905	G→C	7.6%	S278T (AGC→ACC) ‡	ynjB →	putative ABC transporter periplasmic binding protein
RA	1,836,906	C→T	7.6%	S278S (AGC→AGT) ‡	ynjB →	putative ABC transporter periplasmic binding protein
RA	1,851,206	G→T	9.0%	G116V (GGG→GTG)	ansA →	cytoplasmic L‑asparaginase 1
RA	1,863,257	A→G	8.0%	N163D (AAC→GAC) ‡	gapA →	glyceraldehyde‑3‑phosphate dehydrogenase A
RA	1,863,258	A→T	7.4%	N163I (AAC→ATC) ‡	gapA →	glyceraldehyde‑3‑phosphate dehydrogenase A
RA	1,863,259	C→T	7.6%	N163N (AAC→AAT) ‡	gapA →	glyceraldehyde‑3‑phosphate dehydrogenase A
RA	1,865,682	G→C	8.5%	intergenic (‑46/+44)	yeaE ← / ← mipA	aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA	1,871,766	C→A	6.5%	T461K (ACG→AAG)	yeaI →	putative membrane‑anchored diguanylate cyclase
RA	1,871,770	T→A	5.6%	R462R (CGT→CGA)	yeaI →	putative membrane‑anchored diguanylate cyclase
RA	1,871,771	A→G	5.6%	N463D (AAT→GAT)	yeaI →	putative membrane‑anchored diguanylate cyclase
RA	1,871,776	C→T	5.6%	I464I (ATC→ATT)	yeaI →	putative membrane‑anchored diguanylate cyclase
RA	1,871,777	T→A	5.8%	S465T (TCG→ACG)	yeaI →	putative membrane‑anchored diguanylate cyclase
RA	1,871,781	T→G	5.6%	L466R (CTT→CGT)	yeaI →	putative membrane‑anchored diguanylate cyclase
RA	1,881,358	T→A	7.4%	D151V (GAC→GTC)	dmlR ←	transcriptional activator of dmlA
RA	1,885,805	T→A	5.0%	intergenic (+16/‑40)	yeaW → / → yeaX	putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster/putative YeaWX dioxygenase beta subunit, reductase component
RA	1,885,807	T→A	5.2%	intergenic (+18/‑38)	yeaW → / → yeaX	putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster/putative YeaWX dioxygenase beta subunit, reductase component
RA	1,885,808	T→A	5.2%	intergenic (+19/‑37)	yeaW → / → yeaX	putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster/putative YeaWX dioxygenase beta subunit, reductase component
RA	1,885,810	T→A	5.2%	intergenic (+21/‑35)	yeaW → / → yeaX	putative YeaWX dioxygenase alpha subunit; 2Fe‑2S cluster/putative YeaWX dioxygenase beta subunit, reductase component
RA	1,887,671	A→G	5.5%	A107A (GCT→GCC)	rnd ←	ribonuclease D
RA	1,888,032	T→A	5.2%	intergenic (‑41/+29)	rnd ← / ← fadD	ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)
RA	1,889,915	A→C	5.2%	intergenic (‑169/+36)	fadD ← / ← yeaY	acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated
RA	1,889,916	C→T	5.6%	intergenic (‑170/+35)	fadD ← / ← yeaY	acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated
RA	1,889,917	C→G	5.6%	intergenic (‑171/+34)	fadD ← / ← yeaY	acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated
RA	1,889,918	A→G	5.5%	intergenic (‑172/+33)	fadD ← / ← yeaY	acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated
RA	1,889,919	G→T	5.4%	intergenic (‑173/+32)	fadD ← / ← yeaY	acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated
RA	1,892,363	A→G	5.6%	Y291Y (TAT→TAC)	yoaA ←	putative ATP‑dependent helicase, DinG family
RA	1,896,474	C→A	5.3%	P102Q (CCG→CAG)	nudL →	putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase
RA	1,898,316	T→C	5.0%	intergenic (+20/‑111)	sdaA → / → yoaD	L‑serine dehydratase 1/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production
RA	1,900,671	C→G	8.6%	T305T (ACG→ACC) ‡	yoaE ←	putative membrane protein/conserved protein
RA	1,900,672	G→A	8.5%	T305M (ACG→ATG) ‡	yoaE ←	putative membrane protein/conserved protein
RA	1,900,679	T→C	8.3%	I303V (ATC→GTC)	yoaE ←	putative membrane protein/conserved protein
RA	1,900,680	C→G	8.1%	G302G (GGG→GGC)	yoaE ←	putative membrane protein/conserved protein
RA	1,904,592	C→A	6.0%	T233N (ACT→AAT)	manZ →	mannose‑specific enzyme IID component of PTS
RA	1,904,595	T→G	6.5%	I234S (ATT→AGT)	manZ →	mannose‑specific enzyme IID component of PTS
RA	1,906,229	T→G	6.2%	I181S (ATC→AGC) ‡	mntP →	putative Mn(2+) efflux pump, mntR‑regulated
RA	1,906,230	C→G	5.4%	I181M (ATC→ATG) ‡	mntP →	putative Mn(2+) efflux pump, mntR‑regulated
RA	1,906,231	C→A	7.6%	L182I (CTC→ATC)	mntP →	putative Mn(2+) efflux pump, mntR‑regulated
RA	1,910,295	A→T	12.8%	D7V (GAC→GTC)	yebQ →	putative transporter
RA	1,912,748	T→G	7.6%	intergenic (‑172/+20)	htpX ← / ← prc	putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3
RA	1,912,749	T→A	7.8%	intergenic (‑173/+19)	htpX ← / ← prc	putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3
RA	1,912,750	T→A	8.3%	intergenic (‑174/+18)	htpX ← / ← prc	putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3
RA	1,912,751	C→A	9.7%	intergenic (‑175/+17)	htpX ← / ← prc	putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3
RA	1,926,882	C→A	6.6%	G653V (GGC→GTC)	ptrB ←	protease II
RA	1,926,888	C→A	6.0%	G651V (GGC→GTC)	ptrB ←	protease II
RA	1,926,891	G→C	6.0%	S650* (TCA→TGA)	ptrB ←	protease II
RA	1,926,894	T→G	7.6%	D649A (GAC→GCC)	ptrB ←	protease II
RA	1,926,900	T→G	7.4%	D647A (GAC→GCC)	ptrB ←	protease II
RA	1,929,018	A→T	6.4%	intergenic (‑179/+30)	ptrB ← / ← yebE	protease II/DUF533 family inner membrane protein
RA	1,944,240	T→G	6.2%	intergenic (+41/+106)	znuB → / ← ruvB	zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome
RA	1,946,035	G→T	7.7%	intergenic (‑59/+80)	ruvA ← / ← yobI	component of RuvABC resolvasome, regulatory subunit/uncharacterized protein
RA	1,946,036	A→C	6.7%	intergenic (‑60/+79)	ruvA ← / ← yobI	component of RuvABC resolvasome, regulatory subunit/uncharacterized protein
RA	1,950,301	Δ1 bp	5.3%	coding (222/1773 nt)	aspS ←	aspartyl‑tRNA synthetase
RA	1,950,306	C→G	5.6%	G73R (GGC→CGC)	aspS ←	aspartyl‑tRNA synthetase
RA	1,972,794	C→A	6.0%	intergenic (‑103/+42)	tar ← / ← cheW	methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein
RA	1,972,795	G→T	6.5%	intergenic (‑104/+41)	tar ← / ← cheW	methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein
RA	1,972,797	A→T	5.3%	intergenic (‑106/+39)	tar ← / ← cheW	methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein
RA	1,972,799	A→C	6.1%	intergenic (‑108/+37)	tar ← / ← cheW	methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein
RA	1,972,800	T→G	5.0%	intergenic (‑109/+36)	tar ← / ← cheW	methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein
RA	1,977,223:1	+A	12.5%	intergenic (‑84/+43)	motA ← / ← flhC	proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD
RA	1,977,227	T→A	12.3%	intergenic (‑88/+39)	motA ← / ← flhC	proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD
RA	1,977,230	Δ1 bp	12.7%	intergenic (‑91/+36)	motA ← / ← flhC	proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD
MC JC	1,978,503	Δ776 bp	100%		insB1–insA	insB1, insA
RA	1,985,112	C→G	9.5%	intergenic (‑43/+27)	araG ← / ← araF	L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA	1,992,083	G→C	5.2%	noncoding (35/76 nt)	glyW ←	tRNA‑Gly
RA	2,006,463	T→A	5.7%	V103D (GTC→GAC)	amyA →	cytoplasmic alpha‑amylase
RA	2,006,465	A→T	6.1%	N104Y (AAC→TAC)	amyA →	cytoplasmic alpha‑amylase
RA	2,009,731	A→G	11.5%	intergenic (+19/‑90)	yedF → / → yedK	putative TusA family sulfurtransferase/DUF159 family protein
RA	2,009,732	C→G	11.6%	intergenic (+20/‑89)	yedF → / → yedK	putative TusA family sulfurtransferase/DUF159 family protein
RA	2,009,733	C→T	11.8%	intergenic (+21/‑88)	yedF → / → yedK	putative TusA family sulfurtransferase/DUF159 family protein
RA	2,019,460	G→A	100%	V359I (GTC→ATC)	fliK →	flagellar hook‑length control protein
RA	2,041,160	T→G	5.2%	intergenic (+42/‑215)	yedZ → / → zinT	inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic
RA	2,054,976	A→G	6.7%	intergenic (+17/‑85)	shiA → / → amn	shikimate transporter/AMP nucleosidase
RA	2,054,977	T→G	6.7%	intergenic (+18/‑84)	shiA → / → amn	shikimate transporter/AMP nucleosidase
RA	2,054,978	C→A	6.8%	intergenic (+19/‑83)	shiA → / → amn	shikimate transporter/AMP nucleosidase
RA	2,054,979	C→T	6.6%	intergenic (+20/‑82)	shiA → / → amn	shikimate transporter/AMP nucleosidase
RA	2,057,595	T→C	8.5%	intergenic (+21/+432)	yeeN → / ← asnW	UPF0082 family protein/tRNA‑Asn
RA	2,057,597	T→G	9.1%	intergenic (+23/+430)	yeeN → / ← asnW	UPF0082 family protein/tRNA‑Asn
RA	2,057,599	T→A	10.9%	intergenic (+25/+428)	yeeN → / ← asnW	UPF0082 family protein/tRNA‑Asn
RA	2,057,601	C→A	9.6%	intergenic (+27/+426)	yeeN → / ← asnW	UPF0082 family protein/tRNA‑Asn
RA	2,057,603	G→A	9.9%	intergenic (+29/+424)	yeeN → / ← asnW	UPF0082 family protein/tRNA‑Asn
RA	2,060,265	A→C	7.0%	L217R (CTG→CGG)	cbl ←	ssuEADCB/tauABCD operon transcriptional activator
RA	2,060,271	C→G	6.4%	G215A (GGT→GCT) ‡	cbl ←	ssuEADCB/tauABCD operon transcriptional activator
RA	2,060,272	C→G	6.4%	G215R (GGT→CGT) ‡	cbl ←	ssuEADCB/tauABCD operon transcriptional activator
RA	2,060,278	G→T	5.2%	R213S (CGC→AGC)	cbl ←	ssuEADCB/tauABCD operon transcriptional activator
RA	2,062,354	T→A	8.7%	intergenic (+19/+37)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA	2,062,355	T→G	8.8%	intergenic (+20/+36)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA	2,062,356	C→A	8.8%	intergenic (+21/+35)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA	2,062,357	T→A	8.8%	intergenic (+22/+34)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA	2,068,409	G→C	6.6%	pseudogene (11/159 nt)	yoeH ←	pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
RA	2,074,691	C→G	6.5%	intergenic (+33/‑88)	flu → / → yeeR	CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein
RA	2,079,004	G→C	8.4%	intergenic (+73/+28)	yoeF → / ← yeeX	pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein
RA	2,081,057	A→G	7.9%	V69A (GTG→GCG) ‡	sbmC ←	DNA gyrase inhibitor
RA	2,081,058	C→T	7.7%	V69M (GTG→ATG) ‡	sbmC ←	DNA gyrase inhibitor
RA	2,085,662	C→T	7.0%	intergenic (‑137/+42)	yeeE ← / ← plaP	UPF0394 family inner membrane protein/putrescine importer, low affinity
RA	2,085,664	A→G	7.1%	intergenic (‑139/+40)	yeeE ← / ← plaP	UPF0394 family inner membrane protein/putrescine importer, low affinity
RA	2,085,669	T→A	6.9%	intergenic (‑144/+35)	yeeE ← / ← plaP	UPF0394 family inner membrane protein/putrescine importer, low affinity
RA	2,085,670	T→A	6.9%	intergenic (‑145/+34)	yeeE ← / ← plaP	UPF0394 family inner membrane protein/putrescine importer, low affinity
RA	2,085,675	C→T	7.6%	intergenic (‑150/+29)	yeeE ← / ← plaP	UPF0394 family inner membrane protein/putrescine importer, low affinity
RA	2,085,677	A→G	7.5%	intergenic (‑152/+27)	yeeE ← / ← plaP	UPF0394 family inner membrane protein/putrescine importer, low affinity
RA	2,089,854	A→T	7.0%	intergenic (‑141/‑142)	yefM ← / → hisL	antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide
RA	2,090,122	A→G	6.0%	intergenic (+76/‑70)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,090,124	C→G	6.0%	intergenic (+78/‑68)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,090,126	C→T	6.0%	intergenic (+80/‑66)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,099,249	C→T	8.6%	G122D (GGT→GAT)	ugd ←	UDP‑glucose 6‑dehydrogenase
RA	2,099,256	G→T	10.8%	P120T (CCC→ACC)	ugd ←	UDP‑glucose 6‑dehydrogenase
RA	2,099,257	A→T	10.9%	V119V (GTT→GTA) ‡	ugd ←	UDP‑glucose 6‑dehydrogenase
RA	2,099,258	A→C	11.1%	V119G (GTT→GGT) ‡	ugd ←	UDP‑glucose 6‑dehydrogenase
RA	2,115,847	G→T	9.0%	A17E (GCG→GAG)	wcaM ←	colanic acid biosynthesis protein
RA	2,115,849	C→G	9.3%	S16S (TCG→TCC) ‡	wcaM ←	colanic acid biosynthesis protein
RA	2,115,851	A→C	10.9%	S16A (TCG→GCG) ‡	wcaM ←	colanic acid biosynthesis protein
RA	2,118,532	A→G	5.1%	intergenic (‑128/+148)	wcaK ← / ← wzxC	colanic acid biosynthesis protein/putative colanic acid exporter
RA	2,118,533	A→C	5.1%	intergenic (‑129/+147)	wcaK ← / ← wzxC	colanic acid biosynthesis protein/putative colanic acid exporter
RA	2,129,903	T→A	6.4%	N326Y (AAT→TAT)	wcaD ←	putative colanic acid polymerase
RA	2,129,905	T→A	6.5%	D325V (GAC→GTC)	wcaD ←	putative colanic acid polymerase
RA	2,129,907	T→A	6.4%	I324I (ATA→ATT)	wcaD ←	putative colanic acid polymerase
RA	2,140,400	G→A	6.4%	R405W (CGG→TGG)	asmA ←	suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
RA	2,140,401	T→C	6.4%	P404P (CCA→CCG)	asmA ←	suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
RA	2,153,464	T→G	6.2%	intergenic (+13/‑180)	sibA → / → sibB	sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein
RA	2,153,465	C→G	5.9%	intergenic (+14/‑179)	sibA → / → sibB	sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein
RA	2,153,466	C→A	6.3%	intergenic (+15/‑178)	sibA → / → sibB	sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein
RA	2,153,792	T→G	5.9%	intergenic (+13/‑224)	sibB → / → mdtA	sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A
RA	2,153,793	C→G	6.3%	intergenic (+14/‑223)	sibB → / → mdtA	sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A
RA	2,153,794	C→A	7.0%	intergenic (+15/‑222)	sibB → / → mdtA	sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A
RA	2,154,483	A→G	5.1%	K156K (AAA→AAG)	mdtA →	multidrug efflux system, subunit A
RA	2,167,278	G→A	6.9%	intergenic (+78/+24)	cyaR → / ← ogrK	sRNA antisense regulator of ompX mRNA instability, Hfq‑dependent, cAMP‑induced/orphan Ogr protein, positive regulator of P2 growth
RA	2,167,279	A→G	7.0%	intergenic (+79/+23)	cyaR → / ← ogrK	sRNA antisense regulator of ompX mRNA instability, Hfq‑dependent, cAMP‑induced/orphan Ogr protein, positive regulator of P2 growth
RA	2,167,280	C→T	7.0%	intergenic (+80/+22)	cyaR → / ← ogrK	sRNA antisense regulator of ompX mRNA instability, Hfq‑dependent, cAMP‑induced/orphan Ogr protein, positive regulator of P2 growth
RA	2,167,281	T→C	7.1%	intergenic (+81/+21)	cyaR → / ← ogrK	sRNA antisense regulator of ompX mRNA instability, Hfq‑dependent, cAMP‑induced/orphan Ogr protein, positive regulator of P2 growth
RA	2,167,910	C→G	6.6%	intergenic (‑96/+79)	yegZ ← / ← yegR	pseudogene, gpD phage P2‑like protein D/uncharacterized protein
RA	2,168,420	A→T	7.0%	intergenic (‑114/‑292)	yegR ← / → yegS	uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent
RA	2,168,423	A→T	6.9%	intergenic (‑117/‑289)	yegR ← / → yegS	uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent
RA	2,169,657	G→A	5.8%	intergenic (+46/+36)	yegS → / ← gatR	phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
RA	2,169,658	C→A	6.7%	intergenic (+47/+35)	yegS → / ← gatR	phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
RA	2,169,664	A→T	5.8%	intergenic (+53/+29)	yegS → / ← gatR	phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
RA	2,169,665	A→T	5.9%	intergenic (+54/+28)	yegS → / ← gatR	phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
RA	2,169,671	T→G	5.8%	intergenic (+60/+22)	yegS → / ← gatR	phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
RA	2,169,672	T→C	5.8%	intergenic (+61/+21)	yegS → / ← gatR	phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
RA	2,171,814	A→G	9.4%	intergenic (‑87/+19)	gatR ← / ← gatD	pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding
RA	2,171,816	C→G	9.0%	intergenic (‑89/+17)	gatR ← / ← gatD	pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding
RA	2,171,818	C→T	8.7%	intergenic (‑91/+15)	gatR ← / ← gatD	pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding
RA	2,173,359	Δ1 bp	6.0%	pseudogene (4/442 nt)	gatC ←	pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA	2,173,361	Δ2 bp	100%	pseudogene (1‑2/442 nt)	gatC ←	pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA	2,177,332	C→T	5.9%	intergenic (‑128/+180)	gatY ← / ← fbaB	D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA	2,177,337	G→T	7.1%	intergenic (‑133/+175)	gatY ← / ← fbaB	D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA	2,177,340	A→C	6.6%	intergenic (‑136/+172)	gatY ← / ← fbaB	D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA	2,177,345	A→G	5.4%	intergenic (‑141/+167)	gatY ← / ← fbaB	D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA	2,181,277	T→A	5.7%	V61E (GTG→GAG)	yegV →	putative kinase
RA	2,181,282	T→C	5.7%	L63L (TTA→CTA) ‡	yegV →	putative kinase
RA	2,181,284	A→T	5.6%	L63F (TTA→TTT) ‡	yegV →	putative kinase
RA	2,181,285	A→T	5.5%	K64* (AAG→TAG) ‡	yegV →	putative kinase
RA	2,181,287	G→A	5.9%	K64K (AAG→AAA) ‡	yegV →	putative kinase
RA	2,181,292	T→A	5.9%	L66H (CTC→CAC)	yegV →	putative kinase
RA	2,218,501	G→T	5.3%	I19I (ATC→ATA) ‡	yehY ←	putative ABC transporter permease
RA	2,218,502	A→G	5.8%	I19T (ATC→ACC) ‡	yehY ←	putative ABC transporter permease
RA	2,218,507	C→T	5.4%	T17T (ACG→ACA) ‡	yehY ←	putative ABC transporter permease
RA	2,218,509	T→A	5.1%	T17S (ACG→TCG) ‡	yehY ←	putative ABC transporter permease
RA	2,218,511	A→G	5.2%	L16P (CTG→CCG)	yehY ←	putative ABC transporter permease
RA	2,218,516	C→T	5.5%	L14L (CTG→CTA) ‡	yehY ←	putative ABC transporter permease
RA	2,218,517	A→C	6.3%	L14R (CTG→CGG) ‡	yehY ←	putative ABC transporter permease
RA	2,229,322	C→G	6.5%	intergenic (+257/+116)	yohP → / ← dusC	uncharacterized protein/tRNA‑dihydrouridine synthase C
RA	2,230,687	C→A	8.9%	L22M (CTG→ATG) ‡	yohJ →	UPF0299 family inner membrane protein
RA	2,230,689	G→A	7.1%	L22L (CTG→CTA) ‡	yohJ →	UPF0299 family inner membrane protein
RA	2,230,690	T→C	7.0%	Y23H (TAT→CAT) ‡	yohJ →	UPF0299 family inner membrane protein
RA	2,230,692	T→G	6.0%	Y23* (TAT→TAG) ‡	yohJ →	UPF0299 family inner membrane protein
RA	2,247,030	G→A	10.0%	intergenic (‑261/+33)	cirA ← / ← lysP	colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA	2,247,031	G→A	10.1%	intergenic (‑262/+32)	cirA ← / ← lysP	colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA	2,247,032	T→C	9.9%	intergenic (‑263/+31)	cirA ← / ← lysP	colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA	2,247,033	T→C	9.7%	intergenic (‑264/+30)	cirA ← / ← lysP	colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter
RA	2,255,991	A→T	12.5%	K213* (AAA→TAA) ‡	yeiL →	putative transcriptional regulator
RA	2,255,992	A→T	12.5%	K213I (AAA→ATA) ‡	yeiL →	putative transcriptional regulator
RA	2,259,550	A→T	5.1%	intergenic (‑254/+169)	psuK ← / ← fruA	pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components
RA	2,259,553	A→T	5.6%	intergenic (‑257/+166)	psuK ← / ← fruA	pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components
RA	2,263,235	C→T	6.8%	W87* (TGG→TGA) ‡	fruB ←	fused fructose‑specific PTS enzymes: IIA component/HPr component
RA	2,263,236	C→G	6.5%	W87S (TGG→TCG) ‡	fruB ←	fused fructose‑specific PTS enzymes: IIA component/HPr component
RA	2,263,237	A→G	6.2%	W87R (TGG→CGG) ‡	fruB ←	fused fructose‑specific PTS enzymes: IIA component/HPr component
RA	2,267,734	T→C	8.5%	intergenic (+23/‑95)	yeiQ → / → yeiR	putative NAD‑dependent D‑mannonate oxidoreductase/Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
RA	2,267,739	C→G	8.1%	intergenic (+28/‑90)	yeiQ → / → yeiR	putative NAD‑dependent D‑mannonate oxidoreductase/Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
RA	2,267,741	C→G	8.1%	intergenic (+30/‑88)	yeiQ → / → yeiR	putative NAD‑dependent D‑mannonate oxidoreductase/Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
RA	2,267,743	C→G	8.1%	intergenic (+32/‑86)	yeiQ → / → yeiR	putative NAD‑dependent D‑mannonate oxidoreductase/Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
RA	2,267,748	G→A	8.0%	intergenic (+37/‑81)	yeiQ → / → yeiR	putative NAD‑dependent D‑mannonate oxidoreductase/Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
RA	2,270,602	T→C	7.8%	intergenic (+57/‑124)	mepS → / → rtn	murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA	2,270,605	G→A	7.5%	intergenic (+60/‑121)	mepS → / → rtn	murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA	2,282,830	T→C	5.3%	intergenic (+29/+110)	rplY → / ← yejK	50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA	2,282,831	C→G	5.3%	intergenic (+30/+109)	rplY → / ← yejK	50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA	2,282,832	C→G	5.5%	intergenic (+31/+108)	rplY → / ← yejK	50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA	2,282,833	G→A	5.5%	intergenic (+32/+107)	rplY → / ← yejK	50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA	2,286,139	A→T	5.3%	intergenic (+3/‑72)	yejM → / → proL	essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro
RA	2,286,142	T→A	5.0%	intergenic (+6/‑69)	yejM → / → proL	essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro
RA	2,286,145	A→T	6.3%	intergenic (+9/‑66)	yejM → / → proL	essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro
RA	2,290,448	A→G	8.3%	intergenic (‑268/‑52)	yejO ← / → narP	pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ
RA	2,290,449	C→G	8.5%	intergenic (‑269/‑51)	yejO ← / → narP	pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ
RA	2,290,450	C→T	8.5%	intergenic (‑270/‑50)	yejO ← / → narP	pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ
RA	2,302,582	C→T	6.4%	G58R (GGA→AGA)	napA ←	nitrate reductase, periplasmic, large subunit
RA	2,302,584	A→G	6.4%	V57A (GTC→GCC) ‡	napA ←	nitrate reductase, periplasmic, large subunit
RA	2,302,585	C→T	6.5%	V57I (GTC→ATC) ‡	napA ←	nitrate reductase, periplasmic, large subunit
RA	2,302,587	A→G	6.0%	L56P (CTG→CCG)	napA ←	nitrate reductase, periplasmic, large subunit
RA	2,307,664	G→C	8.5%	P318A (CCC→GCC)	yojI ←	microcin J25 efflux ABC transporter permease/ATPase
RA	2,311,177	C→G	7.6%	A120P (GCG→CCG)	apbE ←	putative thiamine‑synthetic flavin transferase lipoprotein
RA	2,311,616	C→T	8.7%	intergenic (‑82/+30)	apbE ← / ← ompC	putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA	2,311,619	A→G	8.6%	intergenic (‑85/+27)	apbE ← / ← ompC	putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA	2,314,800	A→C	10.6%	Q438P (CAG→CCG) ‡	rcsD →	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA	2,314,801	G→T	11.3%	Q438H (CAG→CAT) ‡	rcsD →	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA	2,319,581	A→G	8.8%	V99A (GTG→GCG) ‡	rcsC ←	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA	2,319,582	C→G	8.8%	V99L (GTG→CTG) ‡	rcsC ←	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA	2,319,585	C→G	8.7%	D98H (GAT→CAT)	rcsC ←	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA	2,319,586	C→T	8.5%	A97A (GCG→GCA)	rcsC ←	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA	2,323,275	T→A	6.6%	intergenic (+24/‑172)	atoC → / → atoD	fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA	2,323,280	A→G	6.9%	intergenic (+29/‑167)	atoC → / → atoD	fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA	2,323,283	G→C	5.7%	intergenic (+32/‑164)	atoC → / → atoD	fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA	2,323,286	C→T	6.9%	intergenic (+35/‑161)	atoC → / → atoD	fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA	2,323,291	T→A	5.1%	intergenic (+40/‑156)	atoC → / → atoD	fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
RA	2,356,734	G→C	5.9%	intergenic (+23/‑170)	glpC → / → yfaD	anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein
RA	2,357,665	G→A	12.6%	G254G (GGG→GGA)	yfaD →	transposase_31 family protein
RA	2,364,995	T→G	6.6%	intergenic (+16/+23)	nudI → / ← ais	nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase
RA	2,364,998	C→A	7.1%	intergenic (+19/+20)	nudI → / ← ais	nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase
RA	2,373,177	G→A	8.8%	G96S (GGC→AGC)	arnF →	undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit
RA	2,373,180	T→C	9.0%	W97R (TGG→CGG)	arnF →	undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit
RA	2,375,483	A→T	12.2%	L160L (CTT→CTA) ‡	menC ←	O‑succinylbenzoyl‑CoA synthase
RA	2,375,484	A→T	12.0%	L160H (CTT→CAT) ‡	menC ←	O‑succinylbenzoyl‑CoA synthase
JC JC	2,375,828	IS186 (+) +4 bp	100%	coding (132‑135/963 nt)	menC ←	O‑succinylbenzoyl‑CoA synthase
RA	2,383,956	A→T	6.0%	intergenic (+32/+39)	elaD → / ← yfbK	protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein
RA	2,383,959	A→T	5.7%	intergenic (+35/+36)	elaD → / ← yfbK	protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein
RA	2,385,589	T→C	5.8%	Q45R (CAG→CGG)	yfbK ←	Von Willebrand factor domain putative lipoprotein
RA	2,385,594	G→A	5.7%	A43A (GCC→GCT)	yfbK ←	Von Willebrand factor domain putative lipoprotein
RA	2,392,500	C→G	5.8%	S181T (AGT→ACT)	nuoM ←	NADH:ubiquinone oxidoreductase, membrane subunit M
RA	2,400,191	A→T	5.8%	intergenic (‑26/+27)	nuoG ← / ← nuoF	NADH:ubiquinone oxidoreductase, chain G/NADH:ubiquinone oxidoreductase, chain F
RA	2,400,192	G→C	5.1%	intergenic (‑27/+26)	nuoG ← / ← nuoF	NADH:ubiquinone oxidoreductase, chain G/NADH:ubiquinone oxidoreductase, chain F
RA	2,405,933	C→G	6.1%	A237P (GCA→CCA)	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes
RA	2,405,937	C→G	6.0%	V235V (GTG→GTC)	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes
RA	2,405,941	C→G	5.9%	G234A (GGC→GCC)	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes
RA	2,406,376	C→G	6.2%	C89S (TGC→TCC) ‡	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes
RA	2,406,377	A→C	6.2%	C89G (TGC→GGC) ‡	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes
RA	2,406,378	G→C	6.3%	A88A (GCC→GCG) ‡	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes
RA	2,406,379	G→T	6.3%	A88D (GCC→GAC) ‡	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes
RA	2,406,380	C→G	6.0%	A88P (GCC→CCC) ‡	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes
RA	2,411,408	A→T	8.0%	intergenic (‑56/+31)	yfbS ← / ← yfbT	putative transporter/sugar phosphatas
RA	2,411,410	G→T	8.2%	intergenic (‑58/+29)	yfbS ← / ← yfbT	putative transporter/sugar phosphatas
RA	2,411,411	A→C	8.2%	intergenic (‑59/+28)	yfbS ← / ← yfbT	putative transporter/sugar phosphatas
RA	2,411,413	A→T	8.1%	intergenic (‑61/+26)	yfbS ← / ← yfbT	putative transporter/sugar phosphatas
RA	2,412,911	G→T	5.1%	A74A (GCC→GCA)	yfbV ←	UPF0208 family inner membrane protein
RA	2,412,914	A→C	5.1%	V73V (GTT→GTG)	yfbV ←	UPF0208 family inner membrane protein
RA	2,425,968	T→G	6.0%	intergenic (‑52/+38)	hisQ ← / ← hisJ	histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA	2,425,971	C→A	5.9%	intergenic (‑55/+35)	hisQ ← / ← hisJ	histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA	2,427,698	T→A	5.1%	T32S (ACC→TCC)	argT ←	lysine/arginine/ornithine transporter subunit
RA	2,427,699	T→A	6.1%	G31G (GGA→GGT)	argT ←	lysine/arginine/ornithine transporter subunit
RA	2,428,038	A→T	7.0%	intergenic (‑247/+19)	argT ← / ← ubiX	lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
RA	2,428,039	A→T	8.0%	intergenic (‑248/+18)	argT ← / ← ubiX	lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
RA	2,428,040	A→T	7.4%	intergenic (‑249/+17)	argT ← / ← ubiX	lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
RA	2,430,144	G→C	6.0%	A32G (GCC→GGC)	purF ←	amidophosphoribosyltransferase
RA	2,440,295	A→T	6.6%	intergenic (‑175/+90)	yfcJ ← / ← fabB	putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA	2,440,296	T→G	6.6%	intergenic (‑176/+89)	yfcJ ← / ← fabB	putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA	2,440,297	C→A	7.1%	intergenic (‑177/+88)	yfcJ ← / ← fabB	putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA	2,440,298	A→T	6.3%	intergenic (‑178/+87)	yfcJ ← / ← fabB	putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA	2,449,615	C→G	7.3%	G145G (GGG→GGC) ‡	yfcO ←	DUF2544 family putative outer membrane protein
RA	2,449,616	C→G	7.3%	G145A (GGG→GCG) ‡	yfcO ←	DUF2544 family putative outer membrane protein
RA	2,449,624	Δ1 bp	6.2%	coding (426/822 nt)	yfcO ←	DUF2544 family putative outer membrane protein
RA	2,453,610	G→T	5.1%	pseudogene (1392/2646 nt)	yfcU ←	pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein
RA	2,456,861	A→T	5.4%	intergenic (‑49/+154)	sixA ← / ← fadJ	phosphohistidine phosphatase/enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase
RA	2,457,138	C→G	5.4%	V674V (GTG→GTC)	fadJ ←	enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase
RA	2,460,614	C→T	6.7%	intergenic (‑145/+36)	fadI ← / ← yfcZ	beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein
RA	2,460,618	C→T	6.8%	intergenic (‑149/+32)	fadI ← / ← yfcZ	beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein
RA	2,460,619	A→T	7.3%	intergenic (‑150/+31)	fadI ← / ← yfcZ	beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein
RA	2,460,620	A→G	6.8%	intergenic (‑151/+30)	fadI ← / ← yfcZ	beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein
RA	2,460,624	A→G	6.6%	intergenic (‑155/+26)	fadI ← / ← yfcZ	beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein
RA	2,462,677	A→T	7.6%	intergenic (+31/‑335)	fadL → / → yfdF	long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA	2,462,678	T→A	7.6%	intergenic (+32/‑334)	fadL → / → yfdF	long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA	2,462,679	A→T	7.6%	intergenic (+33/‑333)	fadL → / → yfdF	long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA	2,464,224	T→C	8.1%	intergenic (+154/+28)	yfdF → / ← mlaA	uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component
RA	2,464,225	T→G	8.1%	intergenic (+155/+27)	yfdF → / ← mlaA	uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component
RA	2,464,226	T→C	8.2%	intergenic (+156/+26)	yfdF → / ← mlaA	uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component
RA	2,464,227	G→A	7.8%	intergenic (+157/+25)	yfdF → / ← mlaA	uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component
RA	2,464,228	C→A	8.1%	intergenic (+158/+24)	yfdF → / ← mlaA	uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component
RA	2,464,229	G→A	7.9%	intergenic (+159/+23)	yfdF → / ← mlaA	uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component
RA	2,470,482	C→A	7.1%	intergenic (+20/‑333)	gtrS → / → tfaS	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related
RA	2,473,466	T→A	5.2%	pseudogene (120/708 nt)	oweS ←	pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related
RA	2,473,468	T→C	5.2%	pseudogene (118/708 nt)	oweS ←	pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related
RA	2,473,473	G→C	5.4%	pseudogene (113/708 nt)	oweS ←	pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related
RA	2,473,474	G→C	6.3%	pseudogene (112/708 nt)	oweS ←	pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related
RA	2,473,479	G→A	6.3%	pseudogene (107/708 nt)	oweS ←	pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related
RA	2,473,481	T→A	6.0%	pseudogene (105/708 nt)	oweS ←	pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related
RA	2,474,878	T→C	5.6%	intergenic (+22/‑106)	yfdQ → / → yfdR	CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA	2,474,881	G→A	5.7%	intergenic (+25/‑103)	yfdQ → / → yfdR	CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA	2,477,147	T→C	5.9%	S161S (TCA→TCG) ‡	dsdC ←	dsd operon activator; autorepressor
RA	2,477,149	A→T	5.6%	S161T (TCA→ACA) ‡	dsdC ←	dsd operon activator; autorepressor
RA	2,477,151	G→A	5.9%	P160L (CCG→CTG)	dsdC ←	dsd operon activator; autorepressor
RA	2,483,900	T→A	7.6%	V49D (GTC→GAC)	evgA →	response regulator in two‑component regulatory system with EvgS
RA	2,491,264	T→A	5.8%	E229D (GAA→GAT) ‡	oxc ←	oxalyl CoA decarboxylase, ThDP‑dependent
RA	2,491,266	C→G	6.0%	E229Q (GAA→CAA) ‡	oxc ←	oxalyl CoA decarboxylase, ThDP‑dependent
RA	2,491,268	T→A	5.9%	D228V (GAT→GTT)	oxc ←	oxalyl CoA decarboxylase, ThDP‑dependent
RA	2,497,023	A→T	8.9%	intergenic (+31/+34)	ypdK → / ← alaC	inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA	2,497,024	T→G	9.2%	intergenic (+32/+33)	ypdK → / ← alaC	inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA	2,497,025	C→A	9.4%	intergenic (+33/+32)	ypdK → / ← alaC	inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA	2,497,026	A→T	9.2%	intergenic (+34/+31)	ypdK → / ← alaC	inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA	2,502,665	C→G	5.5%	W607C (TGG→TGC)	fryA ←	putative PTS enzyme: Hpr, enzyme I and IIA components
RA	2,503,930	A→C	7.6%	S186A (TCG→GCG)	fryA ←	putative PTS enzyme: Hpr, enzyme I and IIA components
RA	2,512,728	C→A	8.8%	intergenic (‑22/‑314)	mntH ← / → nupC	manganese/divalent cation transporter/nucleoside (except guanosine) transporter
RA	2,512,729	T→A	10.2%	intergenic (‑23/‑313)	mntH ← / → nupC	manganese/divalent cation transporter/nucleoside (except guanosine) transporter
RA	2,512,730	T→A	11.0%	intergenic (‑24/‑312)	mntH ← / → nupC	manganese/divalent cation transporter/nucleoside (except guanosine) transporter
RA	2,512,731	T→G	9.4%	intergenic (‑25/‑311)	mntH ← / → nupC	manganese/divalent cation transporter/nucleoside (except guanosine) transporter
RA	2,513,638	A→G	5.7%	V199V (GTA→GTG)	nupC →	nucleoside (except guanosine) transporter
RA	2,513,653	C→T	5.8%	S204S (AGC→AGT)	nupC →	nucleoside (except guanosine) transporter
RA	2,519,222	T→G	5.5%	intergenic (+17/+35)	yfeD → / ← gltX	DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA	2,519,225	T→A	5.2%	intergenic (+20/+32)	yfeD → / ← gltX	DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA	2,519,228	C→A	5.5%	intergenic (+23/+29)	yfeD → / ← gltX	DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase
RA	2,521,344	C→T	7.7%	intergenic (+16/+249)	lysV → / ← xapR	tRNA‑Lys/transcriptional activator of xapAB
RA	2,521,346	A→T	7.5%	intergenic (+18/+247)	lysV → / ← xapR	tRNA‑Lys/transcriptional activator of xapAB
RA	2,521,348	A→G	7.5%	intergenic (+20/+245)	lysV → / ← xapR	tRNA‑Lys/transcriptional activator of xapAB
RA	2,523,798	T→G	7.4%	D63A (GAC→GCC)	xapB ←	xanthosine transporter
RA	2,525,907	G→A	5.6%	intergenic (+16/+23)	yfeN → / ← yfeR	putative outer membrane protein/transcriptional regulator of yefH
RA	2,525,908	C→G	5.3%	intergenic (+17/+22)	yfeN → / ← yfeR	putative outer membrane protein/transcriptional regulator of yefH
RA	2,533,415	T→A	12.6%	intergenic (+35/‑349)	cysK → / → ptsH	cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr)
RA	2,533,416	T→A	12.7%	intergenic (+36/‑348)	cysK → / → ptsH	cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr)
RA	2,533,417	T→A	12.5%	intergenic (+37/‑347)	cysK → / → ptsH	cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr)
RA	2,533,418	T→A	12.6%	intergenic (+38/‑346)	cysK → / → ptsH	cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr)
RA	2,549,601	T→G	6.7%	intergenic (+195/+45)	yfeW → / ← yfeX	penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic
RA	2,549,608	T→C	6.3%	intergenic (+202/+38)	yfeW → / ← yfeX	penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic
RA	2,549,609	G→A	6.3%	intergenic (+203/+37)	yfeW → / ← yfeX	penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic
RA	2,549,616	C→A	6.1%	intergenic (+210/+30)	yfeW → / ← yfeX	penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic
RA	2,550,574	C→G	6.9%	intergenic (‑29/+67)	yfeX ← / ← yfeY	porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein
RA	2,550,576	A→T	6.0%	intergenic (‑31/+65)	yfeX ← / ← yfeY	porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein
RA	2,550,578	C→G	6.0%	intergenic (‑33/+63)	yfeX ← / ← yfeY	porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein
RA	2,553,465	C→A	5.3%	L81I (CTT→ATT) ‡	hemF →	coproporphyrinogen III oxidase
RA	2,553,466	T→G	5.5%	L81R (CTT→CGT) ‡	hemF →	coproporphyrinogen III oxidase
RA	2,553,468	G→T	5.9%	A82S (GCC→TCC)	hemF →	coproporphyrinogen III oxidase
RA	2,555,201	T→C	6.8%	intergenic (‑19/+27)	eutR ← / ← eutK	eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein
RA	2,555,202	G→C	6.6%	intergenic (‑20/+26)	eutR ← / ← eutK	eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein
RA	2,555,205	G→C	6.9%	intergenic (‑23/+23)	eutR ← / ← eutK	eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein
RA	2,555,206	G→A	7.3%	intergenic (‑24/+22)	eutR ← / ← eutK	eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein
RA	2,560,317	A→C	6.8%	N21H (AAT→CAT)	yffL →	CPZ‑55 prophage; uncharacterized protein
RA	2,560,321	C→T	7.1%	A22V (GCT→GTT)	yffL →	CPZ‑55 prophage; uncharacterized protein
RA	2,560,326	A→G	6.9%	T24A (ACA→GCA)	yffL →	CPZ‑55 prophage; uncharacterized protein
RA	2,560,330	G→T	6.7%	C25F (TGC→TTC)	yffL →	CPZ‑55 prophage; uncharacterized protein
RA	2,579,154	A→C	6.3%	A163A (GCA→GCC)	talA →	transaldolase A
RA	2,579,157	G→T	6.4%	R164R (CGG→CGT)	talA →	transaldolase A
RA	2,589,125	T→C	5.6%	F511L (TTT→CTT)	acrD →	aminoglycoside/multidrug efflux system
RA	2,590,767	T→C	6.3%	intergenic (+59/+40)	acrD → / ← ypfM	aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA	2,590,771	C→G	6.1%	intergenic (+63/+36)	acrD → / ← ypfM	aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA	2,590,775	G→A	6.4%	intergenic (+67/+32)	acrD → / ← ypfM	aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA	2,592,990	A→C	5.5%	intergenic (+28/+82)	ypfN → / ← ypfH	putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate
RA	2,596,873	Δ1 bp	7.1%	intergenic (‑136/+32)	ypfJ ← / ← purC	putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA	2,596,878:1	+G	7.5%	intergenic (‑141/+27)	ypfJ ← / ← purC	putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA	2,599,236	C→A	8.8%	E175D (GAG→GAT)	dapA ←	dihydrodipicolinate synthase
RA	2,599,239	T→A	8.2%	K174N (AAA→AAT) ‡	dapA ←	dihydrodipicolinate synthase
RA	2,599,240	T→A	7.7%	K174I (AAA→ATA) ‡	dapA ←	dihydrodipicolinate synthase
RA	2,599,241	T→A	8.4%	K174* (AAA→TAA) ‡	dapA ←	dihydrodipicolinate synthase
RA	2,599,244	T→G	7.8%	I173L (ATC→CTC)	dapA ←	dihydrodipicolinate synthase
RA	2,612,823	T→C	9.1%	A308A (GCT→GCC)	hyfR →	hydrogenase‑4 transcriptional activator
RA	2,612,830	G→A	9.7%	V311I (GTT→ATT) ‡	hyfR →	hydrogenase‑4 transcriptional activator
RA	2,612,831	T→A	9.7%	V311D (GTT→GAT) ‡	hyfR →	hydrogenase‑4 transcriptional activator
RA	2,612,832	T→C	9.7%	V311V (GTT→GTC) ‡	hyfR →	hydrogenase‑4 transcriptional activator
RA	2,612,839	G→A	9.5%	A314T (GCC→ACC) ‡	hyfR →	hydrogenase‑4 transcriptional activator
RA	2,612,840	C→G	9.9%	A314G (GCC→GGC) ‡	hyfR →	hydrogenase‑4 transcriptional activator
RA	2,630,918	A→T	19.0%	intergenic (+53/+40)	yfgI → / ← guaA	nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase)
RA	2,630,919	G→A	18.1%	intergenic (+54/+39)	yfgI → / ← guaA	nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase)
RA	2,630,920	T→C	18.1%	intergenic (+55/+38)	yfgI → / ← guaA	nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase)
RA	2,630,921	A→T	18.5%	intergenic (+56/+37)	yfgI → / ← guaA	nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase)
RA	2,638,160	G→T	5.3%	H165N (CAC→AAC)	bamB ←	BamABCDE complex OM biogenesis lipoprotein
RA	2,643,987	A→G	6.9%	V99V (GTT→GTC) ‡	rlmN ←	dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent
RA	2,643,988	A→T	6.1%	V99D (GTT→GAT) ‡	rlmN ←	dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent
RA	2,643,989	C→T	6.7%	V99I (GTT→ATT) ‡	rlmN ←	dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent
RA	2,652,132	C→G	5.0%	V52V (GTG→GTC) ‡	yfhM ←	bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein
RA	2,652,133	A→C	5.0%	V52G (GTG→GGG) ‡	yfhM ←	bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein
RA	2,653,367	G→A	6.2%	intergenic (+28/‑488)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA	2,653,372	T→C	6.2%	intergenic (+33/‑483)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA	2,653,692	A→T	7.1%	intergenic (+353/‑163)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA	2,653,693	A→G	7.2%	intergenic (+354/‑162)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA	2,653,695	A→T	7.6%	intergenic (+356/‑160)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA	2,653,697	C→T	6.9%	intergenic (+358/‑158)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA	2,653,698	A→T	9.0%	intergenic (+359/‑157)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA	2,656,386	C→T	13.2%	intergenic (‑28/+150)	pepB ← / ← iscX	aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase
RA	2,656,391	G→A	13.4%	intergenic (‑33/+145)	pepB ← / ← iscX	aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase
RA	2,656,392	T→C	12.9%	intergenic (‑34/+144)	pepB ← / ← iscX	aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase
RA	2,656,397	A→G	13.2%	intergenic (‑39/+139)	pepB ← / ← iscX	aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase
RA	2,658,034	T→A	5.3%	N301I (AAT→ATT)	hscA ←	DnaK‑like molecular chaperone specific for IscU
RA	2,658,422	C→G	5.2%	A172P (GCG→CCG)	hscA ←	DnaK‑like molecular chaperone specific for IscU
RA	2,660,611	G→T	7.0%	Y307* (TAC→TAA) ‡	iscS ←	cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent
RA	2,660,612	T→A	7.3%	Y307F (TAC→TTC) ‡	iscS ←	cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent
RA	2,660,613	A→C	6.8%	Y307D (TAC→GAC) ‡	iscS ←	cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent
RA	2,660,621	C→G	5.8%	S304T (AGC→ACC)	iscS ←	cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent
RA	2,662,376	T→A	5.1%	intergenic (‑245/+207)	iscR ← / ← trmJ	isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent
RA	2,672,640	G→T	6.6%	Q198H (CAG→CAT)	hcaD →	phenylpropionate dioxygenase, ferredoxin reductase subunit
RA	2,679,434:1	+C	5.0%	intergenic (‑67/+30)	yphF ← / ← yphG	putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein
RA	2,681,969	C→G	5.1%	Q259H (CAG→CAC) ‡	yphG ←	DUF4380 domain‑containing TPR repeat protein
RA	2,681,971	G→A	5.0%	Q259* (CAG→TAG) ‡	yphG ←	DUF4380 domain‑containing TPR repeat protein
RA	2,687,043	G→T	5.9%	intergenic (+18/+27)	hmp → / ← glnB	fused nitric oxide dioxygenase/dihydropteridine reductase 2/regulatory protein P‑II for glutamine synthetase
RA	2,687,044	A→T	6.8%	intergenic (+19/+26)	hmp → / ← glnB	fused nitric oxide dioxygenase/dihydropteridine reductase 2/regulatory protein P‑II for glutamine synthetase
RA	2,687,045	A→T	6.8%	intergenic (+20/+25)	hmp → / ← glnB	fused nitric oxide dioxygenase/dihydropteridine reductase 2/regulatory protein P‑II for glutamine synthetase
RA	2,687,046	A→C	6.7%	intergenic (+21/+24)	hmp → / ← glnB	fused nitric oxide dioxygenase/dihydropteridine reductase 2/regulatory protein P‑II for glutamine synthetase
RA	2,691,169	A→T	6.2%	noncoding (172/184 nt)	glmY ←	sRNA activator of glmS mRNA, glmZ processing antagonist
RA	2,691,171	T→A	5.7%	noncoding (170/184 nt)	glmY ←	sRNA activator of glmS mRNA, glmZ processing antagonist
RA	2,691,173	A→T	5.8%	noncoding (168/184 nt)	glmY ←	sRNA activator of glmS mRNA, glmZ processing antagonist
RA	2,700,868	T→C	5.0%	H44R (CAC→CGC)	acpS ←	holo‑[acyl‑carrier‑protein] synthase 1
RA	2,701,548	A→T	5.5%	L61Q (CTG→CAG)	pdxJ ←	pyridoxine 5'‑phosphate synthase
RA	2,704,304	A→G	5.7%	intergenic (‑241/+31)	rnc ← / ← lepB	RNase III/leader peptidase (signal peptidase I)
RA	2,704,306	A→T	6.3%	intergenic (‑243/+29)	rnc ← / ← lepB	RNase III/leader peptidase (signal peptidase I)
RA	2,704,308	C→T	5.8%	intergenic (‑245/+27)	rnc ← / ← lepB	RNase III/leader peptidase (signal peptidase I)
RA	2,707,320	A→T	6.5%	intergenic (‑196/+2)	lepA ← / ← rseC	back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA	2,707,321	A→T	7.0%	intergenic (‑197/+1)	lepA ← / ← rseC	back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA	2,712,128	C→G	10.1%	A213P (GCG→CCG)	trmN ←	tRNA1(Val) (adenine(37)‑N6)‑methyltransferase
RA	2,712,130	T→A	9.8%	Q212L (CAG→CTG)	trmN ←	tRNA1(Val) (adenine(37)‑N6)‑methyltransferase
RA	2,712,133	G→C	10.6%	P211R (CCG→CGG)	trmN ←	tRNA1(Val) (adenine(37)‑N6)‑methyltransferase
RA	2,718,554	A→T	5.6%	intergenic (‑26/‑181)	yfiF ← / → trxC	putative methyltransferase/thioredoxin 2
RA	2,724,095	C→A	9.7%	intergenic (+13/‑33)	pssA → / → yfiM	phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA	2,724,097	T→A	9.8%	intergenic (+15/‑31)	pssA → / → yfiM	phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA	2,724,099	T→G	9.7%	intergenic (+17/‑29)	pssA → / → yfiM	phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA	2,729,465	G→A	7.3%	intergenic (‑21/+151)	gltW ← / ← rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA	2,729,466	T→A	7.0%	intergenic (‑22/+150)	gltW ← / ← rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA	2,729,467	T→C	7.0%	intergenic (‑23/+149)	gltW ← / ← rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA	2,731,073	A→T	7.9%	noncoding (85/1542 nt)	rrsG ←	16S ribosomal RNA of rrnG operon
RA	2,731,074	A→T	7.5%	noncoding (84/1542 nt)	rrsG ←	16S ribosomal RNA of rrnG operon
RA	2,736,911	C→T	7.2%	intergenic (+28/‑243)	bamD → / → raiA	BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit
RA	2,736,913	T→A	8.0%	intergenic (+30/‑241)	bamD → / → raiA	BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit
RA	2,736,914	T→A	6.9%	intergenic (+31/‑240)	bamD → / → raiA	BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit
RA	2,736,916	A→G	7.2%	intergenic (+33/‑238)	bamD → / → raiA	BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit
RA	2,738,925	G→T	10.3%	intergenic (+20/+23)	pheA → / ← tyrA	chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase
RA	2,738,926	T→C	10.1%	intergenic (+21/+22)	pheA → / ← tyrA	chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase
RA	2,738,927	G→A	10.3%	intergenic (+22/+21)	pheA → / ← tyrA	chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase
RA	2,738,928	A→C	9.9%	intergenic (+23/+20)	pheA → / ← tyrA	chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase
RA	2,750,073	G→T	10.6%	intergenic (+13/+42)	yfjD → / ← grpE	UPF0053 family inner membrane protein/heat shock protein
RA	2,750,078	T→G	11.0%	intergenic (+18/+37)	yfjD → / ← grpE	UPF0053 family inner membrane protein/heat shock protein
RA	2,750,081	C→A	11.8%	intergenic (+21/+34)	yfjD → / ← grpE	UPF0053 family inner membrane protein/heat shock protein
RA	2,750,086	A→C	11.4%	intergenic (+26/+29)	yfjD → / ← grpE	UPF0053 family inner membrane protein/heat shock protein
RA	2,753,986	A→T	7.1%	intergenic (+40/+22)	bamE → / ← ratB	lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
RA	2,757,418	C→A	5.5%	intergenic (+18/+226)	intA → / ← yfjH	CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein
RA	2,757,419	T→G	5.5%	intergenic (+19/+225)	intA → / ← yfjH	CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein
RA	2,757,420	C→A	6.0%	intergenic (+20/+224)	intA → / ← yfjH	CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein
RA	2,757,421	T→G	5.5%	intergenic (+21/+223)	intA → / ← yfjH	CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein
RA	2,761,620	T→G	5.1%	K641Q (AAG→CAG)	yfjK ←	radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA	2,761,623	C→A	5.6%	V640L (GTA→TTA)	yfjK ←	radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA	2,775,502	T→C	6.7%	intergenic (+481/‑43)	yfjW → / → ypjI	CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
RA	2,775,503	C→T	6.7%	intergenic (+482/‑42)	yfjW → / → ypjI	CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
RA	2,775,504	A→G	6.6%	intergenic (+483/‑41)	yfjW → / → ypjI	CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
RA	2,775,505	G→A	6.7%	intergenic (+484/‑40)	yfjW → / → ypjI	CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
RA	2,777,571	A→G	6.1%	D40G (GAC→GGC)	ypjF →	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA	2,777,573	A→G	6.2%	T41A (ACG→GCG) ‡	ypjF →	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA	2,777,574	C→T	6.1%	T41M (ACG→ATG) ‡	ypjF →	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA	2,777,576	C→T	5.9%	P42S (CCG→TCG)	ypjF →	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA	2,788,671	A→T	9.0%	intergenic (+22/‑314)	ygaQ → / → csiD	uncharacterized protein; putative enzyme/carbon starvation protein
RA	2,788,673	A→T	9.0%	intergenic (+24/‑312)	ygaQ → / → csiD	uncharacterized protein; putative enzyme/carbon starvation protein
RA	2,788,674	A→T	9.2%	intergenic (+25/‑311)	ygaQ → / → csiD	uncharacterized protein; putative enzyme/carbon starvation protein
RA	2,788,676	A→T	9.8%	intergenic (+27/‑309)	ygaQ → / → csiD	uncharacterized protein; putative enzyme/carbon starvation protein
RA	2,796,375	T→A	5.8%	I138F (ATT→TTT)	ygaU ←	uncharacterized protein
RA	2,801,056	A→T	8.4%	N31I (AAT→ATT)	nrdI →	NrdEF cluster assembly flavodoxin
RA	2,802,651	T→C	10.3%	V435A (GTA→GCA)	nrdE →	ribonucleoside‑diphosphate reductase 2, alpha subunit
RA	2,802,654	A→T	10.4%	E436V (GAG→GTG) ‡	nrdE →	ribonucleoside‑diphosphate reductase 2, alpha subunit
RA	2,802,655	G→C	10.4%	E436D (GAG→GAC) ‡	nrdE →	ribonucleoside‑diphosphate reductase 2, alpha subunit
RA	2,802,656	A→T	10.4%	T437S (ACT→TCT)	nrdE →	ribonucleoside‑diphosphate reductase 2, alpha subunit
RA	2,802,659	G→A	10.1%	A438T (GCC→ACC)	nrdE →	ribonucleoside‑diphosphate reductase 2, alpha subunit
RA	2,807,091	T→C	8.5%	intergenic (+17/‑41)	proW → / → proX	glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA	2,807,093	A→T	8.7%	intergenic (+19/‑39)	proW → / → proX	glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA	2,807,095	G→A	8.8%	intergenic (+21/‑37)	proW → / → proX	glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA	2,810,872	C→T	7.0%	H35Y (CAC→TAC) ‡	mprA →	transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA	2,810,873	A→G	7.0%	H35R (CAC→CGC) ‡	mprA →	transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA	2,814,174	T→A	7.3%	intergenic (+20/+44)	emrB → / ← luxS	multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA	2,814,175	T→A	7.7%	intergenic (+21/+43)	emrB → / ← luxS	multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA	2,823,838	C→A	5.6%	intergenic (‑69/+11)	recA ← / ← pncC	DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase
RA	2,823,839	T→G	5.6%	intergenic (‑70/+10)	recA ← / ← pncC	DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase
RA	2,828,533	A→T	6.3%	intergenic (+17/‑88)	srlD → / → srlM	sorbitol‑6‑phosphate dehydrogenase/sorbitol=responsive srl operon transcriptional activator
RA	2,835,766	A→C	5.7%	C554G (TGC→GGC)	hypF ←	carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein
RA	2,837,471	C→T	5.1%	intergenic (‑46/+107)	hypF ← / ← hydN	carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	2,837,472	A→G	5.2%	intergenic (‑47/+106)	hypF ← / ← hydN	carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	2,837,477	A→G	5.1%	intergenic (‑52/+101)	hypF ← / ← hydN	carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	2,837,479	C→T	5.1%	intergenic (‑54/+99)	hypF ← / ← hydN	carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	2,837,484	C→T	5.1%	intergenic (‑59/+94)	hypF ← / ← hydN	carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	2,837,485	A→G	5.0%	intergenic (‑60/+93)	hypF ← / ← hydN	carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
RA	2,839,321	C→G	5.3%	intergenic (‑57/‑203)	ascG ← / → ascF	asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components
RA	2,839,323	T→A	5.5%	intergenic (‑59/‑201)	ascG ← / → ascF	asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components
RA	2,839,324	T→A	5.0%	intergenic (‑60/‑200)	ascG ← / → ascF	asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components
RA	2,856,257	G→C	6.6%	L640L (CTG→CTC)	fhlA →	formate hydrogenlyase transcriptional activator
RA	2,866,487	G→C	8.0%	intergenic (+22/+72)	ygbN → / ← rpoS	putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA	2,866,488	G→C	7.9%	intergenic (+23/+71)	ygbN → / ← rpoS	putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA	2,881,595	G→T	6.2%	S183Y (TCC→TAC) ‡	casC ←	CRISP RNA (crRNA) containing Cascade antiviral complex protein
RA	2,881,596	A→C	6.1%	S183A (TCC→GCC) ‡	casC ←	CRISP RNA (crRNA) containing Cascade antiviral complex protein
RA	2,884,577	T→C	6.1%	R881R (AGA→AGG) ‡	ygcB ←	Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
RA	2,884,578	C→A	6.5%	R881I (AGA→ATA) ‡	ygcB ←	Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
RA	2,884,579	T→G	6.1%	R881R (AGA→CGA) ‡	ygcB ←	Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
RA	2,884,580	G→A	5.9%	T880T (ACC→ACT)	ygcB ←	Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
RA	2,900,322	C→T	8.7%	intergenic (‑49/‑270)	ygcW ← / → yqcE	putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
RA	2,900,324	G→T	8.5%	intergenic (‑51/‑268)	ygcW ← / → yqcE	putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
RA	2,900,327	A→C	8.9%	intergenic (‑54/‑265)	ygcW ← / → yqcE	putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
RA	2,902,494	G→T	12.8%	G200V (GGA→GTA) ‡	ygcE →	putative kinase
RA	2,902,495	A→C	12.6%	G200G (GGA→GGC) ‡	ygcE →	putative kinase
RA	2,906,607	C→T	7.2%	intergenic (+24/+36)	ygcG → / ← eno	TPM domain protein, putative phosphatase/enolase
RA	2,906,608	G→C	7.9%	intergenic (+25/+35)	ygcG → / ← eno	TPM domain protein, putative phosphatase/enolase
RA	2,906,609	G→C	7.3%	intergenic (+26/+34)	ygcG → / ← eno	TPM domain protein, putative phosphatase/enolase
RA	2,907,998	A→T	10.1%	intergenic (‑57/+31)	eno ← / ← pyrG	enolase/CTP synthetase
RA	2,909,856	A→T	6.5%	intergenic (‑190/+38)	pyrG ← / ← mazG	CTP synthetase/nucleoside triphosphate pyrophosphohydrolase
RA	2,909,857	A→T	6.3%	intergenic (‑191/+37)	pyrG ← / ← mazG	CTP synthetase/nucleoside triphosphate pyrophosphohydrolase
RA	2,909,858	A→T	6.4%	intergenic (‑192/+36)	pyrG ← / ← mazG	CTP synthetase/nucleoside triphosphate pyrophosphohydrolase
RA	2,911,007	G→A	7.6%	R29C (CGT→TGT)	mazF ←	mRNA interferase toxin, antitoxin is MazE
RA	2,911,008	A→T	7.4%	H28Q (CAT→CAA) ‡	mazF ←	mRNA interferase toxin, antitoxin is MazE
RA	2,911,009	T→C	7.7%	H28R (CAT→CGT) ‡	mazF ←	mRNA interferase toxin, antitoxin is MazE
RA	2,919,899	A→G	5.5%	L283S (TTG→TCG)	gudX ←	glucarate dehydratase‑related protein, substrate unknown
RA	2,919,901	G→C	6.2%	G282G (GGC→GGG) ‡	gudX ←	glucarate dehydratase‑related protein, substrate unknown
RA	2,919,903	C→G	5.3%	G282R (GGC→CGC) ‡	gudX ←	glucarate dehydratase‑related protein, substrate unknown
RA	2,919,905	G→C	5.4%	T281S (ACC→AGC)	gudX ←	glucarate dehydratase‑related protein, substrate unknown
RA	2,919,907	C→T	5.3%	A280A (GCG→GCA)	gudX ←	glucarate dehydratase‑related protein, substrate unknown
RA	2,945,013	C→A	5.0%	intergenic (+28/+23)	csdE → / ← tcdA	CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA
RA	2,945,020	C→T	5.0%	intergenic (+35/+16)	csdE → / ← tcdA	CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA
RA	2,945,970	A→G	5.7%	intergenic (‑128/+111)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA/membrane‑bound lytic murein transglycosylase A
RA	2,945,971	A→C	7.9%	intergenic (‑129/+110)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA/membrane‑bound lytic murein transglycosylase A
RA	2,962,561	G→A	7.6%	N68N (AAC→AAT) ‡	ppdC ←	putative prepilin peptidase‑dependent protein
RA	2,962,562	T→C	7.6%	N68S (AAC→AGC) ‡	ppdC ←	putative prepilin peptidase‑dependent protein
RA	2,962,960	T→A	7.8%	Q66L (CAG→CTG)	ygdB ←	DUF2509 family protein
RA	2,962,962	C→A	5.8%	T65T (ACG→ACT) ‡	ygdB ←	DUF2509 family protein
RA	2,962,963	G→C	6.6%	T65R (ACG→AGG) ‡	ygdB ←	DUF2509 family protein
RA	2,962,964	T→G	8.3%	T65P (ACG→CCG) ‡	ygdB ←	DUF2509 family protein
RA	2,962,966	T→A	6.8%	Q64L (CAG→CTG)	ygdB ←	DUF2509 family protein
RA	2,968,379	T→A	5.6%	N19I (AAT→ATT)	ptsP ←	PEP‑protein phosphotransferase enzyme I; GAF domain containing protein
RA	2,971,146	T→C	5.0%	intergenic (+13/‑125)	ygdQ → / → ygdR	UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA	2,976,320	T→G	5.4%	noncoding (66/82 nt)	omrB ←	sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent
RA	2,976,321	C→A	7.2%	noncoding (65/82 nt)	omrB ←	sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent
RA	2,987,103	C→T	6.6%	intergenic (+27/‑433)	yqeG → / → yqeH	putative transporter/putative LuxR family transcriptional regulator
RA	2,987,104	T→A	6.6%	intergenic (+28/‑432)	yqeG → / → yqeH	putative transporter/putative LuxR family transcriptional regulator
RA	2,987,105	A→G	6.6%	intergenic (+29/‑431)	yqeG → / → yqeH	putative transporter/putative LuxR family transcriptional regulator
RA	2,993,896	T→A	5.4%	intergenic (+40/‑43)	ygeI → / → pbl	uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family
RA	3,020,510	G→T	5.0%	intergenic (+21/‑30)	ssnA → / → ygfM	putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA	3,020,512	A→C	5.5%	intergenic (+23/‑28)	ssnA → / → ygfM	putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA	3,033,624	A→G	5.9%	intergenic (+11/+33)	idi → / ← lysS	isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA	3,033,627	T→A	5.5%	intergenic (+14/+30)	idi → / ← lysS	isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA	3,033,628	T→A	6.0%	intergenic (+15/+29)	idi → / ← lysS	isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA	3,033,631	C→T	6.9%	intergenic (+18/+26)	idi → / ← lysS	isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA	3,045,994	G→T	7.5%	intergenic (‑93/+174)	ygfF ← / ← gcvP	putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA	3,045,999	T→G	6.7%	intergenic (‑98/+169)	ygfF ← / ← gcvP	putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA	3,046,000	T→A	6.7%	intergenic (‑99/+168)	ygfF ← / ← gcvP	putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA	3,046,001	C→A	6.6%	intergenic (‑100/+167)	ygfF ← / ← gcvP	putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA	3,046,006	A→C	7.3%	intergenic (‑105/+162)	ygfF ← / ← gcvP	putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA	3,057,145	G→C	6.8%	intergenic (+157/+33)	sibC → / ← serA	sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase
RA	3,058,651	G→A	5.9%	intergenic (‑241/+15)	serA ← / ← rpiA	D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive
RA	3,058,652	G→C	5.8%	intergenic (‑242/+14)	serA ← / ← rpiA	D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive
RA	3,058,653	T→C	6.0%	intergenic (‑243/+13)	serA ← / ← rpiA	D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive
RA	3,059,703	A→T	6.0%	intergenic (‑2/‑50)	yqfE ← / → argP	pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
RA	3,059,704	A→T	6.2%	intergenic (‑3/‑49)	yqfE ← / → argP	pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
RA	3,066,308	A→T	7.8%	I289N (ATT→AAT) ‡	ygfI ←	putative DNA‑binding transcriptional regulator
RA	3,066,309	T→A	7.7%	I289F (ATT→TTT) ‡	ygfI ←	putative DNA‑binding transcriptional regulator
RA	3,066,310	A→T	7.7%	H288Q (CAT→CAA)	ygfI ←	putative DNA‑binding transcriptional regulator
RA	3,067,320	A→T	5.7%	intergenic (‑147/+20)	ygfI ← / ← yggE	putative DNA‑binding transcriptional regulator/oxidative stress defense protein
RA	3,067,323	A→T	7.1%	intergenic (‑150/+17)	ygfI ← / ← yggE	putative DNA‑binding transcriptional regulator/oxidative stress defense protein
RA	3,068,922	G→T	6.7%	intergenic (‑114/+25)	argO ← / ← mscS	arginine transporter/mechanosensitive channel protein, small conductance
RA	3,068,924	G→A	6.8%	intergenic (‑116/+23)	argO ← / ← mscS	arginine transporter/mechanosensitive channel protein, small conductance
RA	3,068,927	T→C	7.3%	intergenic (‑119/+20)	argO ← / ← mscS	arginine transporter/mechanosensitive channel protein, small conductance
RA	3,068,929	A→C	7.1%	intergenic (‑121/+18)	argO ← / ← mscS	arginine transporter/mechanosensitive channel protein, small conductance
RA	3,086,641	C→A	9.1%	intergenic (+239/‑65)	yqgC → / → metK	uncharacterized protein/S‑adenosylmethionine synthetase
RA	3,090,226	T→C	6.9%	C158R (TGC→CGC)	yggI →	Zn‑dependent metalloprotease‑related protein
RA	3,090,229	G→A	6.9%	G159S (GGT→AGT)	yggI →	Zn‑dependent metalloprotease‑related protein
RA	3,105,532	C→G	7.3%	intergenic (+20/‑182)	mltC → / → nupG	membrane‑bound lytic murein transglycosylase C/nucleoside transporter
RA	3,105,533	G→C	7.5%	intergenic (+21/‑181)	mltC → / → nupG	membrane‑bound lytic murein transglycosylase C/nucleoside transporter
RA	3,105,536	G→C	7.7%	intergenic (+24/‑178)	mltC → / → nupG	membrane‑bound lytic murein transglycosylase C/nucleoside transporter
RA	3,105,537	C→G	7.6%	intergenic (+25/‑177)	mltC → / → nupG	membrane‑bound lytic murein transglycosylase C/nucleoside transporter
RA	3,107,875	A→G	6.7%	I427I (ATT→ATC) ‡	speC ←	ornithine decarboxylase, constitutive
RA	3,107,876	A→C	6.5%	I427S (ATT→AGT) ‡	speC ←	ornithine decarboxylase, constitutive
RA	3,107,879	G→T	6.5%	A426D (GCT→GAT) ‡	speC ←	ornithine decarboxylase, constitutive
RA	3,107,880	C→T	6.8%	A426T (GCT→ACT) ‡	speC ←	ornithine decarboxylase, constitutive
RA	3,111,961	T→C	5.0%	pseudogene (130/963 nt)	yghE ←	pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP)
RA	3,114,519	G→A	6.1%	intergenic (‑167/+31)	pppA ← / ← sslE	bifunctional prepilin leader peptidase/ methylase/putative secreted and surface‑associated lipoprotein mucinase
RA	3,114,520	C→A	6.1%	intergenic (‑168/+30)	pppA ← / ← sslE	bifunctional prepilin leader peptidase/ methylase/putative secreted and surface‑associated lipoprotein mucinase
RA	3,114,526	G→T	7.0%	intergenic (‑174/+24)	pppA ← / ← sslE	bifunctional prepilin leader peptidase/ methylase/putative secreted and surface‑associated lipoprotein mucinase
RA	3,114,527	A→C	6.4%	intergenic (‑175/+23)	pppA ← / ← sslE	bifunctional prepilin leader peptidase/ methylase/putative secreted and surface‑associated lipoprotein mucinase
RA	3,114,533	T→G	5.9%	intergenic (‑181/+17)	pppA ← / ← sslE	bifunctional prepilin leader peptidase/ methylase/putative secreted and surface‑associated lipoprotein mucinase
RA	3,114,534	T→C	5.9%	intergenic (‑182/+16)	pppA ← / ← sslE	bifunctional prepilin leader peptidase/ methylase/putative secreted and surface‑associated lipoprotein mucinase
RA	3,119,574	A→T	5.1%	intergenic (‑462/+23)	sslE ← / ← glcA	putative secreted and surface‑associated lipoprotein mucinase/glycolate transporter
RA	3,136,628	T→G	6.0%	intergenic (‑257/+35)	pitB ← / ← gss	phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase
RA	3,136,629	C→A	7.1%	intergenic (‑258/+34)	pitB ← / ← gss	phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase
RA	3,136,630	T→A	5.8%	intergenic (‑259/+33)	pitB ← / ← gss	phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase
RA	3,136,631	T→G	5.6%	intergenic (‑260/+32)	pitB ← / ← gss	phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase
RA	3,136,632	C→A	6.1%	intergenic (‑261/+31)	pitB ← / ← gss	phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase
RA	3,140,859	T→G	8.0%	E143A (GAG→GCG)	hybD ←	maturation protease for hydrogenase 2
RA	3,140,861	A→T	6.3%	L142L (CTT→CTA) ‡	hybD ←	maturation protease for hydrogenase 2
RA	3,140,862	A→T	6.2%	L142H (CTT→CAT) ‡	hybD ←	maturation protease for hydrogenase 2
RA	3,140,864	C→A	7.0%	A141A (GCG→GCT)	hybD ←	maturation protease for hydrogenase 2
RA	3,146,761	T→G	5.9%	intergenic (‑24/+95)	yghW ← / ← yghX	DUF2623 family protein/pseudogene, dienlactone hydrolase family
RA	3,146,762	G→A	6.1%	intergenic (‑25/+94)	yghW ← / ← yghX	DUF2623 family protein/pseudogene, dienlactone hydrolase family
RA	3,146,763	T→C	5.8%	intergenic (‑26/+93)	yghW ← / ← yghX	DUF2623 family protein/pseudogene, dienlactone hydrolase family
RA	3,146,764	C→A	5.5%	intergenic (‑27/+92)	yghW ← / ← yghX	DUF2623 family protein/pseudogene, dienlactone hydrolase family
RA	3,151,956	A→C	7.3%	L10R (CTT→CGT) ‡	exbB ←	membrane spanning protein in TonB‑ExbB‑ExbD complex
RA	3,151,957	G→T	6.6%	L10I (CTT→ATT) ‡	exbB ←	membrane spanning protein in TonB‑ExbB‑ExbD complex
RA	3,155,227	C→A	9.5%	intergenic (‑9/‑128)	yqhC ← / → yqhD	transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent
RA	3,155,228	A→G	9.8%	intergenic (‑10/‑127)	yqhC ← / → yqhD	transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent
RA	3,155,229	C→T	9.3%	intergenic (‑11/‑126)	yqhC ← / → yqhD	transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent
RA	3,155,230	T→G	9.1%	intergenic (‑12/‑125)	yqhC ← / → yqhD	transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent
RA	3,156,590	C→A	7.6%	intergenic (+72/‑33)	yqhD → / → dkgA	aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA	3,156,591	T→G	7.0%	intergenic (+73/‑32)	yqhD → / → dkgA	aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA	3,169,260	Δ1 bp	9.5%	intergenic (‑29/+24)	ygiV ← / ← ygiW	transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein
RA	3,169,265:1	+T	9.7%	intergenic (‑34/+19)	ygiV ← / ← ygiW	transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein
RA	3,171,852	C→T	7.2%	intergenic (+19/+27)	qseC → / ← ygiZ	quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA	3,171,857	A→T	7.3%	intergenic (+24/+22)	qseC → / ← ygiZ	quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA	3,171,858	A→T	6.7%	intergenic (+25/+21)	qseC → / ← ygiZ	quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA	3,171,863	A→G	6.7%	intergenic (+30/+16)	qseC → / ← ygiZ	quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA	3,172,439	A→T	5.8%	intergenic (‑228/‑91)	ygiZ ← / → mdaB	inner membrane protein/NADPH quinone reductase
RA	3,180,505	G→T	8.9%	E29* (GAG→TAG) ‡	ygiC →	ATP‑Grasp family ATPase
RA	3,180,506	A→C	7.3%	E29A (GAG→GCG) ‡	ygiC →	ATP‑Grasp family ATPase
RA	3,180,513:1	+A	6.5%	coding (93/1161 nt)	ygiC →	ATP‑Grasp family ATPase
RA	3,181,600	A→G	8.5%	intergenic (+19/+19)	ygiC → / ← ygiD	ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase
RA	3,181,601	C→A	8.5%	intergenic (+20/+18)	ygiC → / ← ygiD	ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase
RA	3,181,602	T→G	8.2%	intergenic (+21/+17)	ygiC → / ← ygiD	ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase
RA	3,181,603	C→T	8.5%	intergenic (+22/+16)	ygiC → / ← ygiD	ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase
RA	3,183,345:1	+T	5.5%	intergenic (+22/+468)	zupT → / ← ribB	zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	3,183,350	Δ1 bp	5.4%	intergenic (+27/+463)	zupT → / ← ribB	zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	3,187,989	A→G	9.4%	pseudogene (563/2439 nt)	yqiG →	pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
RA	3,187,991	T→A	9.5%	pseudogene (565/2439 nt)	yqiG →	pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
RA	3,187,993	C→T	9.8%	pseudogene (567/2439 nt)	yqiG →	pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
RA	3,207,038	G→A	5.3%	P192P (CCG→CCA)	ttdA →	L‑tartrate dehydratase, alpha subunit
RA	3,208,201	G→A	5.0%	V60M (GTG→ATG)	ttdT →	L‑tartrate/succinate antiporte
RA	3,208,205	G→A	5.0%	G61D (GGT→GAT)	ttdT →	L‑tartrate/succinate antiporte
RA	3,208,210	T→C	5.4%	S63P (TCC→CCC)	ttdT →	L‑tartrate/succinate antiporte
RA	3,208,214	T→C	5.7%	I64T (ATC→ACC)	ttdT →	L‑tartrate/succinate antiporte
RA	3,215,694	G→T	5.8%	intergenic (+21/+33)	ileX → / ← yqjH	tRNA‑Ile/putative siderophore interacting protein
RA	3,215,695	A→T	6.1%	intergenic (+22/+32)	ileX → / ← yqjH	tRNA‑Ile/putative siderophore interacting protein
RA	3,215,696	A→T	6.0%	intergenic (+23/+31)	ileX → / ← yqjH	tRNA‑Ile/putative siderophore interacting protein
RA	3,215,697	A→C	6.0%	intergenic (+24/+30)	ileX → / ← yqjH	tRNA‑Ile/putative siderophore interacting protein
RA	3,221,149	G→A	5.4%	I33I (ATC→ATT) ‡	ygjH ←	putative tRNA binding protein; putative tRNA corner chaperone
RA	3,221,150	A→T	5.4%	I33N (ATC→AAC) ‡	ygjH ←	putative tRNA binding protein; putative tRNA corner chaperone
RA	3,221,151	T→C	5.4%	I33V (ATC→GTC) ‡	ygjH ←	putative tRNA binding protein; putative tRNA corner chaperone
RA	3,238,463	C→T	5.8%	intergenic (+166/‑117)	ygjR → / → alx	putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator
RA	3,238,464	A→C	5.5%	intergenic (+167/‑116)	ygjR → / → alx	putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator
RA	3,238,465	G→T	5.4%	intergenic (+168/‑115)	ygjR → / → alx	putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator
RA	3,238,466	A→G	5.8%	intergenic (+169/‑114)	ygjR → / → alx	putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator
RA	3,239,609	T→G	5.9%	intergenic (+64/‑335)	alx → / → sstT	putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA	3,239,610	C→G	6.6%	intergenic (+65/‑334)	alx → / → sstT	putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA	3,239,611	C→A	6.9%	intergenic (+66/‑333)	alx → / → sstT	putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA	3,246,561	T→G	5.6%	intergenic (+39/‑91)	exuT → / → exuR	hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor
RA	3,246,562	C→A	6.0%	intergenic (+40/‑90)	exuT → / → exuR	hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor
RA	3,246,563	T→G	5.6%	intergenic (+41/‑89)	exuT → / → exuR	hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor
RA	3,246,564	C→A	5.6%	intergenic (+42/‑88)	exuT → / → exuR	hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor
RA	3,253,285	T→A	6.3%	intergenic (+18/+33)	yhaI → / ← yhaJ	DUF805 family inner membrane protein/LysR family putative transcriptional regulator
RA	3,253,288	T→A	5.9%	intergenic (+21/+30)	yhaI → / ← yhaJ	DUF805 family inner membrane protein/LysR family putative transcriptional regulator
RA	3,256,441	T→G	10.1%	T71P (ACG→CCG)	yhaM ←	putative L‑serine dehydratase alpha chain
RA	3,256,442	G→C	8.2%	G70G (GGC→GGG) ‡	yhaM ←	putative L‑serine dehydratase alpha chain
RA	3,256,443	C→A	8.2%	G70V (GGC→GTC) ‡	yhaM ←	putative L‑serine dehydratase alpha chain
RA	3,256,450	C→T	8.9%	V68I (GTT→ATT)	yhaM ←	putative L‑serine dehydratase alpha chain
RA	3,258,719	A→C	6.7%	S311A (TCA→GCA)	tdcG ←	L‑serine dehydratase 3, anaerobic
RA	3,263,500	G→A	7.8%	P54L (CCG→CTG) ‡	tdcD ←	propionate kinase/acetate kinase C, anaerobic
RA	3,263,501	G→C	7.6%	P54A (CCG→GCG) ‡	tdcD ←	propionate kinase/acetate kinase C, anaerobic
RA	3,263,502	T→C	7.7%	A53A (GCA→GCG)	tdcD ←	propionate kinase/acetate kinase C, anaerobic
RA	3,270,194	G→T	7.6%	intergenic (+592/+22)	yhaC → / ← rnpB	pentapetide repeats‑related protein/RNase P, M1 RNA component
RA	3,270,195	A→C	12.1%	intergenic (+593/+21)	yhaC → / ← rnpB	pentapetide repeats‑related protein/RNase P, M1 RNA component
RA	3,270,196	A→G	7.6%	intergenic (+594/+20)	yhaC → / ← rnpB	pentapetide repeats‑related protein/RNase P, M1 RNA component
RA	3,276,886	C→A	12.0%	intergenic (+33/‑116)	garD → / → prlF	D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA	3,276,887	T→C	11.9%	intergenic (+34/‑115)	garD → / → prlF	D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA	3,276,890	G→A	11.9%	intergenic (+37/‑112)	garD → / → prlF	D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA	3,276,891	T→G	11.7%	intergenic (+38/‑111)	garD → / → prlF	D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA	3,282,927	A→G	5.0%	I318V (ATC→GTC)	agaS →	tagatose‑6‑phosphate ketose/aldose isomerase
RA	3,291,110	A→T	5.6%	K766I (AAA→ATA)	yraJ →	putative outer membrane protein
RA	3,305,913	G→T	7.0%	intergenic (‑96/+58)	mtr ← / ← deaD	tryptophan transporter of high affinity/ATP‑dependent RNA helicase
RA	3,305,914	G→T	7.0%	intergenic (‑97/+57)	mtr ← / ← deaD	tryptophan transporter of high affinity/ATP‑dependent RNA helicase
RA	3,305,916	A→T	6.0%	intergenic (‑99/+55)	mtr ← / ← deaD	tryptophan transporter of high affinity/ATP‑dependent RNA helicase
RA	3,305,918	A→C	6.0%	intergenic (‑101/+53)	mtr ← / ← deaD	tryptophan transporter of high affinity/ATP‑dependent RNA helicase
RA	3,305,919	A→C	5.3%	intergenic (‑102/+52)	mtr ← / ← deaD	tryptophan transporter of high affinity/ATP‑dependent RNA helicase
RA	3,313,207	G→A	6.1%	intergenic (‑29/+135)	rbfA ← / ← infB	30s ribosome binding factor/translation initiation factor IF‑2
RA	3,313,208	T→A	6.1%	intergenic (‑30/+134)	rbfA ← / ← infB	30s ribosome binding factor/translation initiation factor IF‑2
RA	3,313,209	T→C	6.2%	intergenic (‑31/+133)	rbfA ← / ← infB	30s ribosome binding factor/translation initiation factor IF‑2
RA	3,322,698	A→G	6.7%	intergenic (‑193/+35)	secG ← / ← glmM	preprotein translocase membrane subunit/phosphoglucosamine mutase
RA	3,322,700	A→G	6.8%	intergenic (‑195/+33)	secG ← / ← glmM	preprotein translocase membrane subunit/phosphoglucosamine mutase
RA	3,322,703	C→T	7.0%	intergenic (‑198/+30)	secG ← / ← glmM	preprotein translocase membrane subunit/phosphoglucosamine mutase
RA	3,322,705	C→T	6.9%	intergenic (‑200/+28)	secG ← / ← glmM	preprotein translocase membrane subunit/phosphoglucosamine mutase
RA	3,324,952	A→G	5.8%	intergenic (‑41/+49)	folP ← / ← ftsH	7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA	3,324,955	A→G	5.6%	intergenic (‑44/+46)	folP ← / ← ftsH	7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA	3,324,956	C→T	5.5%	intergenic (‑45/+45)	folP ← / ← ftsH	7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA	3,324,959	C→T	5.5%	intergenic (‑48/+42)	folP ← / ← ftsH	7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA	3,328,182	A→T	7.8%	intergenic (+99/+57)	yhbY → / ← greA	RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA	3,328,183	T→A	7.8%	intergenic (+100/+56)	yhbY → / ← greA	RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA	3,328,184	A→T	7.8%	intergenic (+101/+55)	yhbY → / ← greA	RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA	3,334,703	A→G	6.9%	intergenic (+22/‑206)	ispB → / → sfsB	octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA	3,334,704	G→C	6.4%	intergenic (+23/‑205)	ispB → / → sfsB	octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA	3,334,705	C→T	6.8%	intergenic (+24/‑204)	ispB → / → sfsB	octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA	3,339,818	Δ1 bp	6.3%	coding (248/810 nt)	mlaF ←	ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein
RA	3,349,162	C→T	6.9%	V216V (GTG→GTA) ‡	mtgA ←	biosynthetic peptidoglycan transglycosylase
RA	3,349,163	A→G	6.9%	V216A (GTG→GCG) ‡	mtgA ←	biosynthetic peptidoglycan transglycosylase
RA	3,350,678	Δ1 bp	7.3%	noncoding (102/121 nt)	arcZ →	sRNA positive antisense regulator of rpoS; binds Hfq
RA	3,350,682:1	+A	7.3%	noncoding (106/121 nt)	arcZ →	sRNA positive antisense regulator of rpoS; binds Hfq
RA	3,354,537	C→G	9.5%	intergenic (‑487/‑188)	yhcC ← / → gltB	putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit
RA	3,360,643	T→A	5.6%	intergenic (+27/‑533)	gltD → / → gltF	glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
RA	3,360,644	G→C	6.4%	intergenic (+28/‑532)	gltD → / → gltF	glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
RA	3,360,645	T→A	5.7%	intergenic (+29/‑531)	gltD → / → gltF	glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
RA	3,368,142	A→T	5.5%	M106L (ATG→TTG)	yhcG →	DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily
RA	3,368,150	C→T	6.9%	G108G (GGC→GGT)	yhcG →	DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily
RA	3,371,064	A→C	6.9%	intergenic (‑28/+20)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑P epimerase/sialic acid transporter
RA	3,371,065	C→T	7.1%	intergenic (‑29/+19)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑P epimerase/sialic acid transporter
RA	3,371,068	A→G	7.1%	intergenic (‑32/+16)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑P epimerase/sialic acid transporter
RA	3,371,069	G→T	6.6%	intergenic (‑33/+15)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑P epimerase/sialic acid transporter
RA	3,377,768	C→T	6.9%	intergenic (‑348/+47)	sspA ← / ← rpsI	stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9
RA	3,377,769	G→T	6.9%	intergenic (‑349/+46)	sspA ← / ← rpsI	stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9
RA	3,377,770	A→C	6.9%	intergenic (‑350/+45)	sspA ← / ← rpsI	stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9
RA	3,377,771	A→G	7.0%	intergenic (‑351/+44)	sspA ← / ← rpsI	stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9
RA	3,380,440	C→A	5.4%	L84M (CTG→ATG) ‡	yhcB →	DUF1043 family inner membrane‑anchored protein
RA	3,380,441	T→G	5.0%	L84R (CTG→CGG) ‡	yhcB →	DUF1043 family inner membrane‑anchored protein
RA	3,380,447	C→T	5.6%	P86L (CCG→CTG)	yhcB →	DUF1043 family inner membrane‑anchored protein
RA	3,388,283	T→C	8.1%	T282A (ACA→GCA)	aaeA ←	p‑hydroxybenzoic acid efflux system component
RA	3,388,284	A→T	7.1%	A281A (GCT→GCA) ‡	aaeA ←	p‑hydroxybenzoic acid efflux system component
RA	3,388,285	G→A	8.0%	A281V (GCT→GTT) ‡	aaeA ←	p‑hydroxybenzoic acid efflux system component
RA	3,397,961	T→G	6.0%	S140R (AGC→CGC)	yhdE ←	dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase
RA	3,397,965	G→T	5.5%	V138V (GTC→GTA) ‡	yhdE ←	dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase
RA	3,397,967	C→T	5.6%	V138I (GTC→ATC) ‡	yhdE ←	dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase
RA	3,397,968	A→G	5.6%	Y137Y (TAT→TAC) ‡	yhdE ←	dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase
RA	3,397,970	A→C	7.7%	Y137D (TAT→GAT) ‡	yhdE ←	dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase
RA	3,397,974	C→A	6.0%	A135A (GCG→GCT)	yhdE ←	dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo‑UTP pyrophosphatase
RA	3,405,885	G→C	6.7%	E150D (GAG→GAC)	accB →	acetyl CoA carboxylase, BCCP subunit
RA	3,405,887	C→A	7.0%	P151Q (CCG→CAG)	accB →	acetyl CoA carboxylase, BCCP subunit
RA	3,405,890	T→G	7.5%	L152R (CTG→CGG)	accB →	acetyl CoA carboxylase, BCCP subunit
RA	3,405,892	G→C	7.1%	V153L (GTC→CTC)	accB →	acetyl CoA carboxylase, BCCP subunit
RA	3,407,293	T→A	6.7%	intergenic (+27/‑82)	accC → / → yhdT	acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA	3,407,294	T→A	7.0%	intergenic (+28/‑81)	accC → / → yhdT	acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA	3,407,295	T→A	6.5%	intergenic (+29/‑80)	accC → / → yhdT	acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA	3,423,229	T→G	5.0%	intergenic (+35/+194)	yhdZ → / ← rrfF	putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA	3,423,230	T→A	5.5%	intergenic (+36/+193)	yhdZ → / ← rrfF	putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA	3,423,231	T→A	5.5%	intergenic (+37/+192)	yhdZ → / ← rrfF	putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA	3,423,232	C→A	5.0%	intergenic (+38/+191)	yhdZ → / ← rrfF	putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA	3,423,620	A→G	6.5%	noncoding (36/76 nt)	thrV ←	tRNA‑Thr
RA	3,423,621	C→G	6.7%	noncoding (35/76 nt)	thrV ←	tRNA‑Thr
RA	3,423,622	C→T	6.7%	noncoding (34/76 nt)	thrV ←	tRNA‑Thr
RA	3,437,908	T→A	10.4%	intergenic (+14/‑116)	trkA → / → mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance
RA	3,437,909	A→T	10.0%	intergenic (+15/‑115)	trkA → / → mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance
RA	3,437,910	A→T	9.8%	intergenic (+16/‑114)	trkA → / → mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance
RA	3,437,911	T→A	10.3%	intergenic (+17/‑113)	trkA → / → mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance
RA	3,439,588	G→C	6.9%	intergenic (‑79/+28)	yhdN ← / ← rplQ	DUF1992 family protein/50S ribosomal subunit protein L17
RA	3,439,589	G→C	6.5%	intergenic (‑80/+27)	yhdN ← / ← rplQ	DUF1992 family protein/50S ribosomal subunit protein L17
RA	3,441,062	G→A	5.0%	S205F (TCC→TTC)	rpsD ←	30S ribosomal subunit protein S4
RA	3,442,572	A→G	6.1%	intergenic (‑101/+46)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,442,573	T→A	6.0%	intergenic (‑102/+45)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,442,574	C→T	5.9%	intergenic (‑103/+44)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,443,592	A→C	7.7%	M169R (ATG→AGG) ‡	secY ←	preprotein translocase membrane subunit
RA	3,443,593	T→A	7.8%	M169L (ATG→TTG) ‡	secY ←	preprotein translocase membrane subunit
RA	3,443,594	G→T	7.9%	T168T (ACC→ACA)	secY ←	preprotein translocase membrane subunit
RA	3,453,413	G→A	5.4%	intergenic (‑143/+95)	rpsJ ← / ← gspB	30S ribosomal subunit protein S10/part of gsp divergon involved in type II protein secretion
RA	3,453,414	A→T	5.4%	intergenic (‑144/+94)	rpsJ ← / ← gspB	30S ribosomal subunit protein S10/part of gsp divergon involved in type II protein secretion
RA	3,453,415	T→C	5.6%	intergenic (‑145/+93)	rpsJ ← / ← gspB	30S ribosomal subunit protein S10/part of gsp divergon involved in type II protein secretion
RA	3,463,457	C→T	5.0%	A178A (GCC→GCT)	gspK →	general secretory pathway component, cryptic
RA	3,470,106	C→T	7.5%	intergenic (‑253/+39)	chiA ← / ← tufA	periplasmic endochitinase/translation elongation factor EF‑Tu 1
RA	3,470,107	G→T	7.7%	intergenic (‑254/+38)	chiA ← / ← tufA	periplasmic endochitinase/translation elongation factor EF‑Tu 1
RA	3,470,108	A→C	7.0%	intergenic (‑255/+37)	chiA ← / ← tufA	periplasmic endochitinase/translation elongation factor EF‑Tu 1
RA	3,470,109	A→G	7.4%	intergenic (‑256/+36)	chiA ← / ← tufA	periplasmic endochitinase/translation elongation factor EF‑Tu 1
RA	3,491,704	G→T	8.0%	intergenic (‑84/+21)	yhfG ← / ← ppiA	putative antitoxin for Fic/peptidyl‑prolyl cis‑trans isomerase A (rotamase A)
RA	3,491,705	A→C	8.0%	intergenic (‑85/+20)	yhfG ← / ← ppiA	putative antitoxin for Fic/peptidyl‑prolyl cis‑trans isomerase A (rotamase A)
RA	3,520,729	C→T	5.8%	W97* (TGG→TGA) ‡	hofP ←	DNA catabolic protein
RA	3,520,730	C→G	5.7%	W97S (TGG→TCG) ‡	hofP ←	DNA catabolic protein
RA	3,520,731	A→G	6.0%	W97R (TGG→CGG) ‡	hofP ←	DNA catabolic protein
RA	3,523,931	T→G	5.7%	V354G (GTC→GGC)	mrcA →	penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA	3,530,671	A→C	10.8%	intergenic (+19/+44)	hslO → / ← yhgE	heat shock protein Hsp33/DUF4153 family putative inner membrane protein
RA	3,530,672	G→C	11.0%	intergenic (+20/+43)	hslO → / ← yhgE	heat shock protein Hsp33/DUF4153 family putative inner membrane protein
RA	3,530,673	G→C	11.0%	intergenic (+21/+42)	hslO → / ← yhgE	heat shock protein Hsp33/DUF4153 family putative inner membrane protein
RA	3,530,674	G→T	11.0%	intergenic (+22/+41)	hslO → / ← yhgE	heat shock protein Hsp33/DUF4153 family putative inner membrane protein
RA	3,537,322	T→A	10.3%	intergenic (+34/‑63)	greB → / → yhgF	transcript cleavage factor/putative transcriptional accessory protein
RA	3,537,323	T→A	10.2%	intergenic (+35/‑62)	greB → / → yhgF	transcript cleavage factor/putative transcriptional accessory protein
RA	3,537,324	T→A	10.5%	intergenic (+36/‑61)	greB → / → yhgF	transcript cleavage factor/putative transcriptional accessory protein
RA	3,537,325	T→A	10.3%	intergenic (+37/‑60)	greB → / → yhgF	transcript cleavage factor/putative transcriptional accessory protein
RA	3,544,689	A→T	5.5%	R52R (CGT→CGA)	bioH ←	pimeloyl‑ACP methyl ester carboxylesterase
RA	3,544,692	C→G	5.1%	G51G (GGG→GGC) ‡	bioH ←	pimeloyl‑ACP methyl ester carboxylesterase
RA	3,544,693	C→G	5.1%	G51A (GGG→GCG) ‡	bioH ←	pimeloyl‑ACP methyl ester carboxylesterase
RA	3,560,455:1	+G	100%	intergenic (‑2/+1)	glpR ← / ← glpR	pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA	3,560,903	A→T	9.0%	L184I (TTA→ATA)	glpG ←	rhomboid intramembrane serine protease
RA	3,560,907	G→C	7.5%	A182A (GCC→GCG)	glpG ←	rhomboid intramembrane serine protease
RA	3,560,910	G→C	7.5%	S181R (AGC→AGG)	glpG ←	rhomboid intramembrane serine protease
RA	3,560,914	A→T	7.3%	I180N (ATC→AAC)	glpG ←	rhomboid intramembrane serine protease
RA	3,566,210	A→T	9.2%	G124G (GGT→GGA) ‡	glgP ←	glycogen phosphorylase
RA	3,566,212	C→G	9.4%	G124R (GGT→CGT) ‡	glgP ←	glycogen phosphorylase
RA	3,566,215	T→A	8.4%	N123Y (AAC→TAC)	glgP ←	glycogen phosphorylase
RA	3,566,218	C→G	8.7%	G122R (GGT→CGT)	glgP ←	glycogen phosphorylase
RA	3,566,220	A→T	8.5%	L121H (CTC→CAC)	glgP ←	glycogen phosphorylase
RA	3,570,719	C→G	5.3%	V201L (GTG→CTG)	glgX ←	glycogen debranching enzyme
RA	3,570,724	Δ1 bp	5.6%	coding (596/1974 nt)	glgX ←	glycogen debranching enzyme
RA	3,577,657	A→G	5.4%	intergenic (‑65/+74)	gntK ← / ← gntR	gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor
RA	3,577,660	C→T	5.4%	intergenic (‑68/+71)	gntK ← / ← gntR	gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor
RA	3,585,060	C→G	5.7%	intergenic (+17/+21)	yrhB → / ← ggt	stable heat shock chaperone/gamma‑glutamyltranspeptidase
RA	3,585,061	C→T	5.7%	intergenic (+18/+20)	yrhB → / ← ggt	stable heat shock chaperone/gamma‑glutamyltranspeptidase
RA	3,585,062	A→G	5.4%	intergenic (+19/+19)	yrhB → / ← ggt	stable heat shock chaperone/gamma‑glutamyltranspeptidase
RA	3,585,063	C→G	5.3%	intergenic (+20/+18)	yrhB → / ← ggt	stable heat shock chaperone/gamma‑glutamyltranspeptidase
RA	3,608,695	C→G	6.4%	intergenic (+46/+56)	zntA → / ← tusA	zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase
RA	3,614,203	A→G	5.1%	K179K (AAA→AAG)	nikA →	nickel/heme ABC transporter periplasmic binding protein
RA	3,616,399	T→G	6.0%	V73G (GTG→GGG)	nikC →	nickel ABC transporter permease
RA	3,617,382	A→C	5.8%	E123A (GAA→GCA)	nikD →	nickel ABC transporter ATPase
RA	3,630,857	C→A	5.2%	intergenic (‑255/+111)	yhiI ← / ← yhiJ	putative membrane fusion protein (MFP) of efflux pump/DUF4049 family protein
RA	3,630,860	T→A	5.1%	intergenic (‑258/+108)	yhiI ← / ← yhiJ	putative membrane fusion protein (MFP) of efflux pump/DUF4049 family protein
RA	3,632,764	G→A	6.2%	intergenic (‑174/+88)	yhiJ ← / ← yhiL	DUF4049 family protein/pseudogene, DUF4049 family protein
RA	3,632,766	C→G	6.4%	intergenic (‑176/+86)	yhiJ ← / ← yhiL	DUF4049 family protein/pseudogene, DUF4049 family protein
RA	3,632,767	A→T	6.9%	intergenic (‑177/+85)	yhiJ ← / ← yhiL	DUF4049 family protein/pseudogene, DUF4049 family protein
RA	3,632,770	A→T	6.4%	intergenic (‑180/+82)	yhiJ ← / ← yhiL	DUF4049 family protein/pseudogene, DUF4049 family protein
RA	3,632,773	A→T	5.7%	intergenic (‑183/+79)	yhiJ ← / ← yhiL	DUF4049 family protein/pseudogene, DUF4049 family protein
RA	3,632,774	C→G	5.9%	intergenic (‑184/+78)	yhiJ ← / ← yhiL	DUF4049 family protein/pseudogene, DUF4049 family protein
RA	3,632,776	T→C	6.0%	intergenic (‑186/+76)	yhiJ ← / ← yhiL	DUF4049 family protein/pseudogene, DUF4049 family protein
RA	3,639,165	T→C	5.5%	intergenic (+24/+220)	pitA → / ← uspB	phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B
RA	3,639,172	G→A	5.1%	intergenic (+31/+213)	pitA → / ← uspB	phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B
RA	3,642,358	T→A	6.0%	intergenic (+27/+22)	dtpB → / ← rsmJ	dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA	3,642,361	T→A	5.7%	intergenic (+30/+19)	dtpB → / ← rsmJ	dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA	3,647,413	A→T	5.0%	K372I (AAA→ATA)	gor →	glutathione oxidoreductase
RA	3,647,670	T→C	5.4%	intergenic (+19/+35)	gor → / ← dinQ	glutathione oxidoreductase/UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system
RA	3,647,672	G→C	6.2%	intergenic (+21/+33)	gor → / ← dinQ	glutathione oxidoreductase/UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system
RA	3,647,673	T→A	5.9%	intergenic (+22/+32)	gor → / ← dinQ	glutathione oxidoreductase/UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system
RA	3,647,674	G→C	5.9%	intergenic (+23/+31)	gor → / ← dinQ	glutathione oxidoreductase/UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system
RA	3,648,128	G→T	5.2%	noncoding (66/84 nt)	agrA →	inactive antisense sRNA
RA	3,648,129	C→T	5.2%	noncoding (67/84 nt)	agrA →	inactive antisense sRNA
RA	3,648,130	A→T	5.1%	noncoding (68/84 nt)	agrA →	inactive antisense sRNA
RA	3,648,131	A→G	5.1%	noncoding (69/84 nt)	agrA →	inactive antisense sRNA
RA	3,648,132	A→C	5.2%	noncoding (70/84 nt)	agrA →	inactive antisense sRNA
RA	3,648,359	G→T	6.8%	noncoding (66/84 nt)	agrB →	antisense sRNA antitoxin for the DinQ toxin
RA	3,648,360	C→T	6.4%	noncoding (67/84 nt)	agrB →	antisense sRNA antitoxin for the DinQ toxin
RA	3,648,361	A→T	6.2%	noncoding (68/84 nt)	agrB →	antisense sRNA antitoxin for the DinQ toxin
RA	3,648,362	A→G	6.4%	noncoding (69/84 nt)	agrB →	antisense sRNA antitoxin for the DinQ toxin
RA	3,648,363	A→C	6.1%	noncoding (70/84 nt)	agrB →	antisense sRNA antitoxin for the DinQ toxin
RA	3,654,551	T→G	5.2%	intergenic (+24/‑132)	slp → / → dctR	outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport
RA	3,654,552	T→A	5.3%	intergenic (+25/‑131)	slp → / → dctR	outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport
RA	3,654,553	C→G	5.3%	intergenic (+26/‑130)	slp → / → dctR	outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport
RA	3,654,554	T→A	5.2%	intergenic (+27/‑129)	slp → / → dctR	outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport
RA	3,655,922	C→T	5.2%	intergenic (‑20/+44)	yhiD ← / ← hdeB	putative Mg(2+) transport ATPase, inner membrane protein/acid‑resistance protein
RA	3,655,929	A→T	5.1%	intergenic (‑27/+37)	yhiD ← / ← hdeB	putative Mg(2+) transport ATPase, inner membrane protein/acid‑resistance protein
RA	3,657,603	T→A	5.1%	intergenic (+36/+383)	hdeD → / ← arrS	acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA	3,658,002	C→T	9.4%	noncoding (53/69 nt)	arrS ←	antisense sRNA ArrS, function unknown
RA	3,658,003	C→G	8.6%	noncoding (52/69 nt)	arrS ←	antisense sRNA ArrS, function unknown
RA	3,658,004	A→G	8.6%	noncoding (51/69 nt)	arrS ←	antisense sRNA ArrS, function unknown
RA	3,663,547	T→C	7.4%	intergenic (+20/+343)	mdtF → / ← gadW	anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX
RA	3,663,553	A→C	7.0%	intergenic (+26/+337)	mdtF → / ← gadW	anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX
RA	3,663,555	G→T	7.3%	intergenic (+28/+335)	mdtF → / ← gadW	anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX
RA	3,663,556	A→C	7.9%	intergenic (+29/+334)	mdtF → / ← gadW	anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX
RA	3,663,558	G→T	7.6%	intergenic (+31/+332)	mdtF → / ← gadW	anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX
RA	3,663,564	G→A	7.4%	intergenic (+37/+326)	mdtF → / ← gadW	anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX
RA	3,676,202	T→G	5.6%	intergenic (+94/+88)	yhjE → / ← yhjG	putative MFS transporter; membrane protein/putative inner membrane‑anchored periplasmic AsmA family protein
RA	3,676,203	C→A	5.2%	intergenic (+95/+87)	yhjE → / ← yhjG	putative MFS transporter; membrane protein/putative inner membrane‑anchored periplasmic AsmA family protein
RA	3,676,210	C→T	5.2%	intergenic (+102/+80)	yhjE → / ← yhjG	putative MFS transporter; membrane protein/putative inner membrane‑anchored periplasmic AsmA family protein
RA	3,681,132	A→G	6.7%	V270A (GTG→GCG) ‡	yhjJ ←	putative periplasmic M16 family chaperone
RA	3,681,133	C→G	7.2%	V270L (GTG→CTG) ‡	yhjJ ←	putative periplasmic M16 family chaperone
RA	3,681,134	C→T	6.7%	A269A (GCG→GCA)	yhjJ ←	putative periplasmic M16 family chaperone
RA	3,700,416	T→C	5.0%	intergenic (+215/‑147)	rdlD → / → yhjV	sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD/putative transporter
RA	3,700,419	T→C	5.0%	intergenic (+218/‑144)	rdlD → / → yhjV	sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD/putative transporter
RA	3,714,163:1	+T	9.8%	coding (2232/2334 nt)	bisC ←	biotin sulfoxide reductase
RA	3,714,168	Δ1 bp	9.6%	coding (2227/2334 nt)	bisC ←	biotin sulfoxide reductase
RA	3,716,508	A→T	5.4%	intergenic (‑114/‑39)	bisC ← / → yiaD	biotin sulfoxide reductase/multicopy suppressor of bamB; outer membrane lipoprotein
RA	3,719,803	A→T	6.4%	intergenic (+35/‑246)	yiaG → / → cspA	HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible
RA	3,719,804	T→C	6.5%	intergenic (+36/‑245)	yiaG → / → cspA	HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible
RA	3,719,805	G→A	6.5%	intergenic (+37/‑244)	yiaG → / → cspA	HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible
RA	3,719,806	A→T	6.4%	intergenic (+38/‑243)	yiaG → / → cspA	HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible
RA	3,722,300	G→T	6.8%	intergenic (+195/+28)	sokA → / ← glyS	pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit
RA	3,722,301	A→C	5.8%	intergenic (+196/+27)	sokA → / ← glyS	pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit
RA	3,728,215	T→A	6.8%	K386I (AAA→ATA)	xylB ←	xylulokinase
RA	3,728,217	A→T	6.8%	I385I (ATT→ATA) ‡	xylB ←	xylulokinase
RA	3,728,219	T→A	6.3%	I385F (ATT→TTT) ‡	xylB ←	xylulokinase
RA	3,729,399:1	+T	8.4%	intergenic (‑28/+44)	xylB ← / ← xylA	xylulokinase/D‑xylose isomerase
RA	3,729,405	C→G	7.9%	intergenic (‑34/+38)	xylB ← / ← xylA	xylulokinase/D‑xylose isomerase
RA	3,729,408	C→G	8.2%	intergenic (‑37/+35)	xylB ← / ← xylA	xylulokinase/D‑xylose isomerase
RA	3,729,413	Δ1 bp	8.3%	intergenic (‑42/+30)	xylB ← / ← xylA	xylulokinase/D‑xylose isomerase
RA	3,732,136	A→C	6.1%	intergenic (+13/‑65)	xylF → / → xylG	D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase
RA	3,732,139	G→T	5.9%	intergenic (+16/‑62)	xylF → / → xylG	D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase
RA	3,732,141	G→C	6.3%	intergenic (+18/‑60)	xylF → / → xylG	D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase
RA	3,732,143	A→C	6.7%	intergenic (+20/‑58)	xylF → / → xylG	D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase
RA	3,732,146	G→T	5.6%	intergenic (+23/‑55)	xylF → / → xylG	D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase
RA	3,736,225	T→G	7.1%	intergenic (+68/+128)	xylR → / ← bax	xylose divergent operon transcriptional activator/putative glucosaminidase
RA	3,736,226	T→C	7.0%	intergenic (+69/+127)	xylR → / ← bax	xylose divergent operon transcriptional activator/putative glucosaminidase
RA	3,740,791	G→C	5.3%	G363R (GGC→CGC)	avtA →	valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
RA	3,747,168:1	+C	7.7%	coding (85/1497 nt)	lyxK →	L‑xylulose kinase
RA	3,747,173	Δ1 bp	8.0%	coding (90/1497 nt)	lyxK →	L‑xylulose kinase
RA	3,756,563	A→G	5.3%	intergenic (‑52/+113)	aldB ← / ← yiaY	aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA	3,756,564	T→A	5.3%	intergenic (‑53/+112)	aldB ← / ← yiaY	aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA	3,756,565	C→T	5.1%	intergenic (‑54/+111)	aldB ← / ← yiaY	aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA	3,770,646	G→T	5.2%	P245Q (CCG→CAG)	yibH ←	putative membrane fusion protein (MFP) component of efflux pump
RA	3,770,649	A→C	6.1%	L244W (TTG→TGG) ‡	yibH ←	putative membrane fusion protein (MFP) component of efflux pump
RA	3,770,650	A→T	5.6%	L244M (TTG→ATG) ‡	yibH ←	putative membrane fusion protein (MFP) component of efflux pump
RA	3,770,651	G→T	6.1%	A243A (GCC→GCA)	yibH ←	putative membrane fusion protein (MFP) component of efflux pump
RA	3,770,654	A→C	6.0%	A242A (GCT→GCG)	yibH ←	putative membrane fusion protein (MFP) component of efflux pump
RA	3,774,214	C→T	5.3%	intergenic (+20/‑210)	mtlA → / → mtlD	mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA	3,781,051	C→G	6.8%	intergenic (+34/‑164)	lldD → / → trmL	L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA	3,781,126	G→T	7.7%	intergenic (+109/‑89)	lldD → / → trmL	L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA	3,781,131	T→G	13.7%	intergenic (+114/‑84)	lldD → / → trmL	L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA	3,781,132	C→G	7.3%	intergenic (+115/‑83)	lldD → / → trmL	L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA	3,781,133	C→A	7.7%	intergenic (+116/‑82)	lldD → / → trmL	L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA	3,790,300	A→T	8.6%	intergenic (‑219/+20)	waaH ← / ← tdh	LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA	3,790,303	A→T	8.2%	intergenic (‑222/+17)	waaH ← / ← tdh	LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA	3,792,765	C→T	7.3%	intergenic (‑214/+61)	kbl ← / ← yibB	glycine C‑acetyltransferase/YibB family protein, function unknown
RA	3,792,766	A→T	6.4%	intergenic (‑215/+60)	kbl ← / ← yibB	glycine C‑acetyltransferase/YibB family protein, function unknown
RA	3,792,767	A→T	6.9%	intergenic (‑216/+59)	kbl ← / ← yibB	glycine C‑acetyltransferase/YibB family protein, function unknown
RA	3,792,768	A→G	7.2%	intergenic (‑217/+58)	kbl ← / ← yibB	glycine C‑acetyltransferase/YibB family protein, function unknown
RA	3,798,234	A→T	10.3%	intergenic (+27/+5)	waaL → / ← waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis
RA	3,798,235	A→T	11.6%	intergenic (+28/+4)	waaL → / ← waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis
RA	3,811,212	C→T	5.2%	intergenic (‑60/+38)	mutM ← / ← rpmG	formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33
RA	3,811,216	C→T	5.1%	intergenic (‑64/+34)	mutM ← / ← rpmG	formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33
RA	3,811,223	A→G	5.1%	intergenic (‑71/+27)	mutM ← / ← rpmG	formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33
RA	3,815,816	C→G	5.6%	intergenic (‑48/+18)	pyrE ← / ← rph	orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
RA	3,815,819	C→G	6.2%	intergenic (‑51/+15)	pyrE ← / ← rph	orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
JC	3,815,859	Δ82 bp	5.2%		[rph]–[rph]	[rph], [rph]
RA	3,817,940	T→A	7.6%	F61I (TTC→ATC)	dinD →	DNA damage‑inducible protein
RA	3,817,948	G→T	8.1%	E63D (GAG→GAT)	dinD →	DNA damage‑inducible protein
RA	3,817,949	A→C	8.5%	I64L (ATC→CTC)	dinD →	DNA damage‑inducible protein
RA	3,817,957	T→A	7.0%	D66E (GAT→GAA)	dinD →	DNA damage‑inducible protein
RA	3,836,276	C→T	6.0%	noncoding (55/95 nt)	selC →	tRNA‑Sec
RA	3,836,277	A→G	5.8%	noncoding (56/95 nt)	selC →	tRNA‑Sec
RA	3,875,281	C→A	6.4%	intergenic (‑121/‑157)	dgoR ← / → yidX	D‑galactonate catabolism operon transcriptional repressor/putative lipoprotein
RA	3,886,756	G→A	5.4%	intergenic (+34/‑72)	yidC → / → mnmE	membrane protein insertase/tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase
RA	3,886,757	T→C	5.3%	intergenic (+35/‑71)	yidC → / → mnmE	membrane protein insertase/tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase
RA	3,888,212	Δ1 bp	8.2%	intergenic (+20/‑223)	mnmE → / → tnaC	tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA	3,888,219	T→A	7.7%	intergenic (+27/‑216)	mnmE → / → tnaC	tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA	3,888,224:1	+A	6.8%	intergenic (+32/‑211)	mnmE → / → tnaC	tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
JC JC	3,890,075	IS5 (–) +4 bp	100%	coding (1346‑1349/1416 nt)	tnaA →	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
RA	3,891,502	C→G	7.0%	intergenic (+19/‑113)	tnaB → / → mdtL	tryptophan transporter of low affinity/multidrug efflux system protein
RA	3,891,504	T→A	6.7%	intergenic (+21/‑111)	tnaB → / → mdtL	tryptophan transporter of low affinity/multidrug efflux system protein
RA	3,891,506	C→G	6.7%	intergenic (+23/‑109)	tnaB → / → mdtL	tryptophan transporter of low affinity/multidrug efflux system protein
RA	3,895,235	C→G	5.2%	intergenic (+17/+37)	chrR → / ← adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
RA	3,897,613	G→A	8.4%	P36P (CCG→CCA)	cbrB →	PRK09823 family inner membrane protein, creBC regulon
RA	3,897,614	C→G	7.7%	L37V (CTG→GTG) ‡	cbrB →	PRK09823 family inner membrane protein, creBC regulon
RA	3,897,615	T→C	7.9%	L37P (CTG→CCG) ‡	cbrB →	PRK09823 family inner membrane protein, creBC regulon
RA	3,906,826	T→C	8.4%	intergenic (‑259/+27)	bglG ← / ← phoU	transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA	3,906,828	A→T	9.0%	intergenic (‑261/+25)	bglG ← / ← phoU	transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA	3,906,830	G→A	7.2%	intergenic (‑263/+23)	bglG ← / ← phoU	transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA	3,908,435	T→G	5.5%	intergenic (‑69/+114)	pstB ← / ← pstA	phosphate ABC transporter ATPase/phosphate ABC transporter permease
RA	3,908,500	G→T	8.1%	intergenic (‑134/+49)	pstB ← / ← pstA	phosphate ABC transporter ATPase/phosphate ABC transporter permease
RA	3,908,505	T→A	7.2%	intergenic (‑139/+44)	pstB ← / ← pstA	phosphate ABC transporter ATPase/phosphate ABC transporter permease
RA	3,908,506	C→G	8.0%	intergenic (‑140/+43)	pstB ← / ← pstA	phosphate ABC transporter ATPase/phosphate ABC transporter permease
RA	3,908,507	T→A	6.7%	intergenic (‑141/+42)	pstB ← / ← pstA	phosphate ABC transporter ATPase/phosphate ABC transporter permease
RA	3,908,512	A→C	6.8%	intergenic (‑146/+37)	pstB ← / ← pstA	phosphate ABC transporter ATPase/phosphate ABC transporter permease
RA	3,915,514	C→T	5.6%	intergenic (‑314/+39)	glmU ← / ← atpC	fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit
RA	3,917,692	G→T	6.3%	P192T (CCG→ACG)	atpG ←	F1 sector of membrane‑bound ATP synthase, gamma subunit
RA	3,917,695	A→C	5.6%	L191V (TTA→GTA)	atpG ←	F1 sector of membrane‑bound ATP synthase, gamma subunit
RA	3,918,291	C→T	7.6%	intergenic (‑26/+25)	atpG ← / ← atpA	F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit
RA	3,918,296	C→T	7.7%	intergenic (‑31/+20)	atpG ← / ← atpA	F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit
RA	3,918,299	A→G	7.3%	intergenic (‑34/+17)	atpG ← / ← atpA	F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit
RA	3,918,304	A→G	7.4%	intergenic (‑39/+12)	atpG ← / ← atpA	F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit
RA	3,918,916	T→A	7.5%	K314N (AAA→AAT) ‡	atpA ←	F1 sector of membrane‑bound ATP synthase, alpha subunit
RA	3,918,917	T→A	7.5%	K314I (AAA→ATA) ‡	atpA ←	F1 sector of membrane‑bound ATP synthase, alpha subunit
RA	3,918,918	T→A	7.4%	K314* (AAA→TAA) ‡	atpA ←	F1 sector of membrane‑bound ATP synthase, alpha subunit
RA	3,920,796	T→C	6.4%	A31A (GCA→GCG)	atpF ←	F0 sector of membrane‑bound ATP synthase, subunit b
RA	3,920,809	G→A	6.6%	P27L (CCG→CTG)	atpF ←	F0 sector of membrane‑bound ATP synthase, subunit b
RA	3,923,717	G→A	7.9%	intergenic (‑37/+27)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34
RA	3,923,718	G→C	7.9%	intergenic (‑38/+26)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34
RA	3,923,719	G→C	7.8%	intergenic (‑39/+25)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34
RA	3,923,720	T→C	7.9%	intergenic (‑40/+24)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34
RA	3,953,432	C→T	5.9%	intergenic (+19/‑46)	ilvE → / → ilvD	branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA	3,953,433	A→G	5.9%	intergenic (+20/‑45)	ilvE → / → ilvD	branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA	3,953,436	C→T	5.9%	intergenic (+23/‑42)	ilvE → / → ilvD	branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA	3,953,437	A→G	5.9%	intergenic (+24/‑41)	ilvE → / → ilvD	branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA	3,954,273	G→T	5.8%	E266* (GAA→TAA) ‡	ilvD →	dihydroxyacid dehydratase
RA	3,954,274	A→C	5.6%	E266A (GAA→GCA) ‡	ilvD →	dihydroxyacid dehydratase
RA	3,956,973:1	+A	6.8%	coding (848/894 nt)	ilvY ←	transcriptional activator of ilvC; autorepressor
RA	3,956,978	Δ1 bp	6.7%	coding (843/894 nt)	ilvY ←	transcriptional activator of ilvC; autorepressor
RA	3,959,924	A→T	9.0%	intergenic (‑111/+88)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene
RA	3,959,925	A→T	8.3%	intergenic (‑112/+87)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene
RA	3,959,926	A→T	8.6%	intergenic (‑113/+86)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene
RA	3,966,768	G→T	10.1%	E118* (GAA→TAA) ‡	rho →	transcription termination factor
RA	3,966,769	A→T	8.5%	E118V (GAA→GTA) ‡	rho →	transcription termination factor
RA	3,966,770	A→C	8.9%	E118D (GAA→GAC) ‡	rho →	transcription termination factor
RA	3,967,704	G→A	7.6%	intergenic (+28/‑212)	rho → / → wecA	transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
RA	3,967,705	T→A	7.6%	intergenic (+29/‑211)	rho → / → wecA	transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
RA	3,967,706	T→A	7.8%	intergenic (+30/‑210)	rho → / → wecA	transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
RA	3,967,707	T→C	7.7%	intergenic (+31/‑209)	rho → / → wecA	transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
RA	3,969,434	A→C	5.6%	D135A (GAT→GCT)	wzzE →	Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein
RA	3,972,673	A→C	9.3%	E51A (GAG→GCG) ‡	rffG →	dTDP‑glucose 4,6‑dehydratase
RA	3,972,674	G→T	6.1%	E51D (GAG→GAT) ‡	rffG →	dTDP‑glucose 4,6‑dehydratase
RA	3,998,147	C→A	5.0%	Y55* (TAC→TAA)	uvrD →	DNA‑dependent ATPase I and helicase II
RA	4,002,398	T→C	8.8%	intergenic (+22/+21)	corA → / ← yigF	magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein
RA	4,002,400	T→A	8.8%	intergenic (+24/+19)	corA → / ← yigF	magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein
RA	4,002,402	G→A	9.0%	intergenic (+26/+17)	corA → / ← yigF	magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein
RA	4,006,041	C→A	5.0%	P60T (CCT→ACT)	recQ →	ATP‑dependent DNA helicase
RA	4,008,408	A→G	7.3%	intergenic (+31/+31)	rhtC → / ← rhtB	threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump
RA	4,008,409	A→C	8.6%	intergenic (+32/+30)	rhtC → / ← rhtB	threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump
RA	4,008,415	T→A	7.6%	intergenic (+38/+24)	rhtC → / ← rhtB	threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump
RA	4,008,416	T→A	7.4%	intergenic (+39/+23)	rhtC → / ← rhtB	threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump
RA	4,008,422	G→T	6.0%	intergenic (+45/+17)	rhtC → / ← rhtB	threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump
RA	4,008,423	C→T	6.1%	intergenic (+46/+16)	rhtC → / ← rhtB	threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump
RA	4,028,482	T→G	5.1%	A97A (GCA→GCC)	fadA ←	3‑ketoacyl‑CoA thiolase (thiolase I)
RA	4,041,216	T→C	6.4%	Q73R (CAG→CGG) ‡	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis protein B
RA	4,041,217	G→A	6.3%	Q73* (CAG→TAG) ‡	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis protein B
RA	4,041,220	T→C	6.4%	S72G (AGC→GGC)	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis protein B
RA	4,041,221	G→A	6.3%	A71A (GCC→GCT)	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis protein B
RA	4,049,986	G→T	12.2%	noncoding (88/109 nt)	spf →	Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA	4,049,989	A→C	11.2%	noncoding (91/109 nt)	spf →	Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA	4,050,224	A→G	5.1%	L181S (TTG→TCG) ‡	yihA ←	cell division GTP‑binding protein
RA	4,050,225	A→T	5.1%	L181M (TTG→ATG) ‡	yihA ←	cell division GTP‑binding protein
RA	4,050,226	C→T	5.1%	S180S (TCG→TCA)	yihA ←	cell division GTP‑binding protein
RA	4,051,259	G→T	14.4%	noncoding (224/245 nt)	csrC →	CsrC sRNA sequesters CsrA, a carbon flux regulator
RA	4,051,262	A→C	13.7%	noncoding (227/245 nt)	csrC →	CsrC sRNA sequesters CsrA, a carbon flux regulator
RA	4,058,620	A→G	5.9%	I72V (ATC→GTC) ‡	typA →	GTP‑binding protein
RA	4,058,621	T→A	5.9%	I72N (ATC→AAC) ‡	typA →	GTP‑binding protein
RA	4,058,622	C→T	5.8%	I72I (ATC→ATT) ‡	typA →	GTP‑binding protein
RA	4,060,261	G→T	5.2%	intergenic (+31/‑186)	typA → / → yihL	GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA	4,060,264	A→C	5.5%	intergenic (+34/‑183)	typA → / → yihL	GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA	4,062,181	Δ1 bp	7.1%	intergenic (+36/‑66)	yihM → / → yihN	putative sugar phosphate isomerase/MFS transporter family protein
RA	4,062,186:1	+G	5.3%	intergenic (+41/‑61)	yihM → / → yihN	putative sugar phosphate isomerase/MFS transporter family protein
RA	4,062,371	A→T	8.0%	N42I (AAT→ATT)	yihN →	MFS transporter family protein
RA	4,062,811	C→A	9.0%	L189M (CTG→ATG) ‡	yihN →	MFS transporter family protein
RA	4,062,813	G→T	8.2%	L189L (CTG→CTT) ‡	yihN →	MFS transporter family protein
RA	4,062,814	A→C	8.1%	N190H (AAT→CAT) ‡	yihN →	MFS transporter family protein
RA	4,062,816	T→G	8.6%	N190K (AAT→AAG) ‡	yihN →	MFS transporter family protein
RA	4,066,845	C→A	5.5%	G117V (GGT→GTT)	yihP ←	putative 2,3‑dihydroxypropane‑1‑sulphonate exporter, membrane protein
RA	4,074,839	T→C	8.7%	H57H (CAT→CAC)	yihW →	putative transcriptional regulator for sulphoquinovose utilization
RA	4,074,841	A→G	8.7%	H58R (CAC→CGC) ‡	yihW →	putative transcriptional regulator for sulphoquinovose utilization
RA	4,074,842	C→T	8.9%	H58H (CAC→CAT) ‡	yihW →	putative transcriptional regulator for sulphoquinovose utilization
RA	4,074,844	G→A	8.5%	G59D (GGT→GAT)	yihW →	putative transcriptional regulator for sulphoquinovose utilization
RA	4,075,521	G→A	5.1%	intergenic (+67/‑32)	yihW → / → yihX	putative transcriptional regulator for sulphoquinovose utilization/alpha‑D‑glucose‑1‑phosphate phosphatase, anomer‑specific
RA	4,076,598	G→C	5.5%	P151P (CCG→CCC)	yihY →	BrkB family putative transporter, inner membrane protein
RA	4,076,603	T→C	5.7%	L153P (CTG→CCG) ‡	yihY →	BrkB family putative transporter, inner membrane protein
RA	4,076,604	G→A	5.7%	L153L (CTG→CTA) ‡	yihY →	BrkB family putative transporter, inner membrane protein
RA	4,076,609	G→C	6.1%	G155A (GGG→GCG)	yihY →	BrkB family putative transporter, inner membrane protein
RA	4,082,696	G→C	6.9%	Q22E (CAG→GAG)	fdoH ←	formate dehydrogenase‑O, Fe‑S subunit
RA	4,088,091	G→C	7.6%	intergenic (+34/+16)	yiiG → / ← frvR	DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain
RA	4,093,463	A→G	8.2%	S270S (AGT→AGC)	rhaD ←	rhamnulose‑1‑phosphate aldolase
RA	4,103,526	A→G	5.0%	intergenic (+30/+76)	yiiM → / ← cpxA	6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR
RA	4,103,527	T→A	5.1%	intergenic (+31/+75)	yiiM → / ← cpxA	6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR
RA	4,103,528	C→T	5.1%	intergenic (+32/+74)	yiiM → / ← cpxA	6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR
RA	4,110,717	A→T	8.8%	intergenic (+32/+23)	cdh → / ← tpiA	CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase
RA	4,110,719	G→C	8.5%	intergenic (+34/+21)	cdh → / ← tpiA	CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase
RA	4,110,721	A→T	9.3%	intergenic (+36/+19)	cdh → / ← tpiA	CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase
RA	4,113,473	T→C	9.4%	L61L (TTG→CTG) ‡	uspD →	stress‑induced protein
RA	4,113,474	T→A	9.3%	L61* (TTG→TAG) ‡	uspD →	stress‑induced protein
RA	4,113,475	G→A	8.7%	L61L (TTG→TTA) ‡	uspD →	stress‑induced protein
RA	4,114,536	C→T	6.5%	intergenic (‑64/+33)	fpr ← / ← glpX	ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II
RA	4,114,537	G→T	6.6%	intergenic (‑65/+32)	fpr ← / ← glpX	ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II
RA	4,114,538	A→C	6.1%	intergenic (‑66/+31)	fpr ← / ← glpX	ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II
RA	4,114,539	A→G	6.3%	intergenic (‑67/+30)	fpr ← / ← glpX	ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II
RA	4,118,828	T→G	7.4%	intergenic (+68/+17)	zapB → / ← rraA	FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein
RA	4,118,829	T→C	7.0%	intergenic (+69/+16)	zapB → / ← rraA	FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein
RA	4,118,830	G→A	7.6%	intergenic (+70/+15)	zapB → / ← rraA	FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein
RA	4,118,831	C→A	7.1%	intergenic (+71/+14)	zapB → / ← rraA	FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein
RA	4,121,622	T→A	7.0%	E42D (GAA→GAT) ‡	hslU ←	molecular chaperone and ATPase component of HslUV protease
RA	4,121,623	T→A	7.5%	E42V (GAA→GTA) ‡	hslU ←	molecular chaperone and ATPase component of HslUV protease
RA	4,121,626	T→A	6.9%	N41I (AAC→ATC) ‡	hslU ←	molecular chaperone and ATPase component of HslUV protease
RA	4,121,627	T→A	7.4%	N41Y (AAC→TAC) ‡	hslU ←	molecular chaperone and ATPase component of HslUV protease
RA	4,121,959	T→G	8.5%	N110T (AAC→ACC)	hslV ←	peptidase component of the HslUV protease
RA	4,121,962	C→A	8.5%	G109V (GGT→GTT)	hslV ←	peptidase component of the HslUV protease
RA	4,127,251	C→T	6.7%	intergenic (+26/+35)	rpmE → / ← yiiX	50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA	4,127,252	A→G	7.6%	intergenic (+27/+34)	rpmE → / ← yiiX	50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA	4,132,424	T→A	7.0%	intergenic (+157/‑192)	metL → / → metF	Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase
RA	4,132,428	T→A	7.1%	intergenic (+161/‑188)	metL → / → metF	Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase
RA	4,132,429	T→A	7.1%	intergenic (+162/‑187)	metL → / → metF	Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase
RA	4,132,430	T→A	7.0%	intergenic (+163/‑186)	metL → / → metF	Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase
RA	4,132,434	T→A	6.6%	intergenic (+167/‑182)	metL → / → metF	Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase
RA	4,136,033	G→A	5.7%	intergenic (+18/‑75)	katG → / → yijE	catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein
RA	4,136,038	T→C	6.0%	intergenic (+23/‑70)	katG → / → yijE	catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein
RA	4,136,039	T→A	6.0%	intergenic (+24/‑69)	katG → / → yijE	catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein
RA	4,136,042	T→A	6.0%	intergenic (+27/‑66)	katG → / → yijE	catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein
RA	4,136,043	G→A	5.5%	intergenic (+28/‑65)	katG → / → yijE	catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein
RA	4,136,048	T→C	5.4%	intergenic (+33/‑60)	katG → / → yijE	catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein
RA	4,141,380	A→T	5.2%	L281H (CTC→CAC)	frwA ←	putative PTS enzyme: Hpr, enzyme I and II components
RA	4,148,049	C→G	8.4%	G90A (GGC→GCC)	yijO ←	AraC family putative transcriptional activator
RA	4,168,349	A→G	9.1%	intergenic (+149/‑23)	rrsB → / → gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
RA	4,168,350	A→T	8.7%	intergenic (+150/‑22)	rrsB → / → gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
RA	4,168,351	C→T	10.1%	intergenic (+151/‑21)	rrsB → / → gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
RA	4,175,787	G→A	6.4%	noncoding (34/76 nt)	thrT →	tRNA‑Thr
RA	4,175,788	G→C	6.1%	noncoding (35/76 nt)	thrT →	tRNA‑Thr
RA	4,175,789	T→C	5.8%	noncoding (36/76 nt)	thrT →	tRNA‑Thr
RA	4,177,171	T→A	7.6%	intergenic (+43/‑187)	tufB → / → secE	translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA	4,177,172	T→A	8.3%	intergenic (+44/‑186)	tufB → / → secE	translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA	4,184,810	G→T	17.8%	G1189V (GGT→GTT)	rpoB →	RNA polymerase, beta subunit
RA	4,185,299	T→C	7.4%	intergenic (+26/‑51)	rpoB → / → rpoC	RNA polymerase, beta subunit/RNA polymerase, beta prime subunit
RA	4,185,306	A→T	8.0%	intergenic (+33/‑44)	rpoB → / → rpoC	RNA polymerase, beta subunit/RNA polymerase, beta prime subunit
RA	4,185,307	A→T	7.1%	intergenic (+34/‑43)	rpoB → / → rpoC	RNA polymerase, beta subunit/RNA polymerase, beta prime subunit
RA	4,185,314	G→A	7.2%	intergenic (+41/‑36)	rpoB → / → rpoC	RNA polymerase, beta subunit/RNA polymerase, beta prime subunit
RA	4,185,907	G→T	6.7%	Q186H (CAG→CAT)	rpoC →	RNA polymerase, beta prime subunit
RA	4,185,913	G→T	9.3%	L188L (CTG→CTT)	rpoC →	RNA polymerase, beta prime subunit
RA	4,185,915	T→A	9.2%	L189Q (CTG→CAG)	rpoC →	RNA polymerase, beta prime subunit
RA	4,185,917	A→C	8.7%	K190Q (AAG→CAG)	rpoC →	RNA polymerase, beta prime subunit
RA	4,185,923	A→C	5.6%	M192L (ATG→CTG)	rpoC →	RNA polymerase, beta prime subunit
RA	4,187,214	A→T	67.8%	D622V (GAC→GTC)	rpoC →	RNA polymerase, beta prime subunit
RA	4,189,525	C→G	6.7%	S1392R (AGC→AGG)	rpoC →	RNA polymerase, beta prime subunit
RA	4,196,354	G→C	5.2%	A152G (GCC→GGC)	rsd ←	stationary phase protein, binds sigma 70 RNA polymerase subunit
RA	4,196,356	G→C	5.2%	A151A (GCC→GCG)	rsd ←	stationary phase protein, binds sigma 70 RNA polymerase subunit
RA	4,213,185	A→T	5.4%	intergenic (+26/‑49)	rrfE → / → yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein
RA	4,214,432	A→T	6.8%	E51D (GAA→GAT)	metA →	homoserine O‑transsuccinylase
RA	4,214,433	A→T	6.8%	N52Y (AAT→TAT) ‡	metA →	homoserine O‑transsuccinylase
RA	4,214,434	A→T	8.3%	N52I (AAT→ATT) ‡	metA →	homoserine O‑transsuccinylase
RA	4,223,854	T→C	5.1%	R9R (CGT→CGC)	metH →	homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent
RA	4,223,855	G→A	6.0%	A10T (GCG→ACG)	metH →	homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent
RA	4,227,550	G→A	6.9%	intergenic (+39/‑181)	metH → / → yjbB	homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA	4,227,555	A→T	6.6%	intergenic (+44/‑176)	metH → / → yjbB	homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA	4,227,560	T→C	6.6%	intergenic (+49/‑171)	metH → / → yjbB	homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA	4,235,579	G→A	6.7%	intergenic (+172/‑327)	pgi → / → yjbE	glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
RA	4,235,581	T→A	6.6%	intergenic (+174/‑325)	pgi → / → yjbE	glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
RA	4,235,583	T→C	6.8%	intergenic (+176/‑323)	pgi → / → yjbE	glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
RA	4,242,546	G→A	5.1%	intergenic (‑292/+80)	xylE ← / ← malG	D‑xylose transporter/maltose transporter subunit
RA	4,242,547	T→C	5.2%	intergenic (‑293/+79)	xylE ← / ← malG	D‑xylose transporter/maltose transporter subunit
RA	4,245,108	T→G	5.2%	intergenic (‑33/+121)	malF ← / ← malE	maltose transporter subunit/maltose transporter subunit
RA	4,245,111	C→A	5.9%	intergenic (‑36/+118)	malF ← / ← malE	maltose transporter subunit/maltose transporter subunit
RA	4,245,113	C→A	5.5%	intergenic (‑38/+116)	malF ← / ← malE	maltose transporter subunit/maltose transporter subunit
RA	4,261,349	G→A	7.1%	intergenic (+43/‑320)	yjbM → / → dusA	uncharacterized protein/tRNA‑dihydrouridine synthase A
RA	4,261,358	T→A	9.1%	intergenic (+52/‑311)	yjbM → / → dusA	uncharacterized protein/tRNA‑dihydrouridine synthase A
RA	4,261,359	T→A	10.2%	intergenic (+53/‑310)	yjbM → / → dusA	uncharacterized protein/tRNA‑dihydrouridine synthase A
RA	4,262,250	G→C	6.7%	G194G (GGG→GGC)	dusA →	tRNA‑dihydrouridine synthase A
RA	4,262,255	G→C	6.7%	S196T (AGC→ACC)	dusA →	tRNA‑dihydrouridine synthase A
RA	4,263,307	G→C	5.4%	R309G (CGT→GGT)	qorA ←	quinone oxidoreductase, NADPH‑dependent
RA	4,274,740	G→A	6.1%	intergenic (+79/+20)	ssb → / ← yjcB	single‑stranded DNA‑binding protein/putative inner membrane protein
RA	4,274,742	T→A	6.4%	intergenic (+81/+18)	ssb → / ← yjcB	single‑stranded DNA‑binding protein/putative inner membrane protein
RA	4,274,744	T→C	6.0%	intergenic (+83/+16)	ssb → / ← yjcB	single‑stranded DNA‑binding protein/putative inner membrane protein
RA	4,277,223	A→T	6.3%	I54N (ATT→AAT)	soxS ←	superoxide response regulon transcriptional activator; autoregulator
RA	4,277,225	G→A	6.3%	Y53Y (TAC→TAT) ‡	soxS ←	superoxide response regulon transcriptional activator; autoregulator
RA	4,277,226	T→C	6.3%	Y53C (TAC→TGC) ‡	soxS ←	superoxide response regulon transcriptional activator; autoregulator
RA	4,277,228	A→T	5.8%	D52E (GAT→GAA)	soxS ←	superoxide response regulon transcriptional activator; autoregulator
RA	4,277,940	A→C	5.3%	noncoding (127/140 nt)	ryjA ←	novel sRNA, function unknown
RA	4,279,854	T→C	5.0%	intergenic (+26/‑126)	ghxP → / → yjcE	guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter
RA	4,279,858	A→C	5.0%	intergenic (+30/‑122)	ghxP → / → yjcE	guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter
RA	4,279,861	G→T	5.5%	intergenic (+33/‑119)	ghxP → / → yjcE	guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter
RA	4,279,864	T→C	5.0%	intergenic (+36/‑116)	ghxP → / → yjcE	guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter
RA	4,281,677	T→A	5.2%	intergenic (+48/+106)	yjcE → / ← yjcF	putative cation/proton antiporter/pentapeptide repeats protein
RA	4,281,679	T→G	5.0%	intergenic (+50/+104)	yjcE → / ← yjcF	putative cation/proton antiporter/pentapeptide repeats protein
RA	4,285,528	A→C	5.3%	L615R (CTG→CGG)	acs ←	acetyl‑CoA synthetase
RA	4,285,530	A→T	5.9%	I614I (ATT→ATA)	acs ←	acetyl‑CoA synthetase
RA	4,285,533	A→T	5.2%	R613R (CGT→CGA) ‡	acs ←	acetyl‑CoA synthetase
RA	4,285,535	G→T	5.4%	R613S (CGT→AGT) ‡	acs ←	acetyl‑CoA synthetase
RA	4,291,512	G→A	5.7%	M1M (GTG→ATG) †‡	nrfE →	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA	4,291,513	T→C	5.8%	M1A (GTG→GCG) †‡	nrfE →	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA	4,296,060	C→T	35.0%	intergenic (+266/+376)	gltP → / ← yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA	4,296,380:1	+CG	100%	intergenic (+586/+56)	gltP → / ← yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA	4,297,193	G→T	5.3%	intergenic (‑68/+26)	yjcO ← / ← fdhF	Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit
RA	4,297,195	A→T	5.3%	intergenic (‑70/+24)	yjcO ← / ← fdhF	Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit
RA	4,297,196	A→C	5.7%	intergenic (‑71/+23)	yjcO ← / ← fdhF	Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit
RA	4,307,294	A→T	8.3%	L169Q (CTG→CAG)	alsK ←	D‑allose kinase
RA	4,307,298	G→A	8.7%	P168S (CCC→TCC)	alsK ←	D‑allose kinase
RA	4,309,870	C→A	6.3%	G371C (GGC→TGC)	alsA ←	D‑allose ABC transporter ATPase
RA	4,309,875	T→G	7.1%	K369T (AAA→ACA) ‡	alsA ←	D‑allose ABC transporter ATPase
RA	4,309,876	T→A	7.1%	K369* (AAA→TAA) ‡	alsA ←	D‑allose ABC transporter ATPase
RA	4,309,877	C→A	7.1%	L368L (CTG→CTT)	alsA ←	D‑allose ABC transporter ATPase
RA	4,309,882	T→G	5.1%	S367R (AGT→CGT)	alsA ←	D‑allose ABC transporter ATPase
RA	4,310,961	G→T	5.8%	S7* (TCG→TAG)	alsA ←	D‑allose ABC transporter ATPase
RA	4,312,074	C→T	6.3%	intergenic (‑32/+27)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA	4,312,080	G→C	6.0%	intergenic (‑38/+21)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA	4,312,083	G→C	6.1%	intergenic (‑41/+18)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA	4,312,089	A→G	6.3%	intergenic (‑47/+12)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA	4,326,272	T→G	6.2%	intergenic (‑531/+127)	yjdN ← / ← yjdM	metalloprotein superfamily protein/zinc‑ribbon family protein
RA	4,332,529	C→G	7.7%	Q248H (CAG→CAC) ‡	basS ←	sensory histidine kinase in two‑component regulatory system with BasR
RA	4,332,531	G→T	7.5%	Q248K (CAG→AAG) ‡	basS ←	sensory histidine kinase in two‑component regulatory system with BasR
RA	4,332,532	A→C	6.9%	V247V (GTT→GTG) ‡	basS ←	sensory histidine kinase in two‑component regulatory system with BasR
RA	4,332,534	C→G	7.4%	V247L (GTT→CTT) ‡	basS ←	sensory histidine kinase in two‑component regulatory system with BasR
RA	4,332,868	G→T	6.1%	R135R (CGC→CGA)	basS ←	sensory histidine kinase in two‑component regulatory system with BasR
RA	4,332,871	A→C	6.7%	S134R (AGT→AGG)	basS ←	sensory histidine kinase in two‑component regulatory system with BasR
RA	4,335,654	T→A	14.2%	intergenic (‑64/+40)	eptA ← / ← adiC	lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA	4,335,655	T→A	12.9%	intergenic (‑65/+39)	eptA ← / ← adiC	lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA	4,336,974	A→T	8.0%	S20T (TCG→ACG)	adiC ←	arginine:agmatine antiporter
RA	4,336,979	A→C	8.1%	M18R (ATG→AGG)	adiC ←	arginine:agmatine antiporter
RA	4,336,981	C→G	7.5%	L17L (CTG→CTC) ‡	adiC ←	arginine:agmatine antiporter
RA	4,336,983	G→T	8.5%	L17M (CTG→ATG) ‡	adiC ←	arginine:agmatine antiporter
RA	4,336,988	A→T	7.3%	V15D (GTC→GAC)	adiC ←	arginine:agmatine antiporter
RA	4,339,802	A→G	6.0%	A240A (GCT→GCC)	adiA ←	arginine decarboxylase
RA	4,339,805	C→T	5.9%	Q239Q (CAG→CAA)	adiA ←	arginine decarboxylase
RA	4,353,170	G→A	12.3%	intergenic (+89/+30)	ghoT → / ← lysU	toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible
RA	4,353,171	C→G	12.2%	intergenic (+90/+29)	ghoT → / ← lysU	toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible
RA	4,353,172	C→G	12.2%	intergenic (+91/+28)	ghoT → / ← lysU	toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible
RA	4,353,173	T→C	12.4%	intergenic (+92/+27)	ghoT → / ← lysU	toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible
RA	4,362,528	G→A	6.2%	intergenic (‑175/+23)	yjdQ ← / ← pheU	pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA	4,362,529	T→C	6.3%	intergenic (‑176/+22)	yjdQ ← / ← pheU	pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA	4,362,593	C→A	6.4%	noncoding (34/76 nt)	pheU ←	tRNA‑Phe
RA	4,365,132	T→G	7.0%	A75A (GCA→GCC) ‡	cutA ←	divalent‑cation tolerance protein, copper sensitivity
RA	4,365,133	G→C	8.1%	A75G (GCA→GGA) ‡	cutA ←	divalent‑cation tolerance protein, copper sensitivity
RA	4,365,134	C→A	7.2%	A75S (GCA→TCA) ‡	cutA ←	divalent‑cation tolerance protein, copper sensitivity
RA	4,367,701	G→C	5.1%	I209M (ATC→ATG) ‡	aspA ←	aspartate ammonia‑lyase
RA	4,367,702	A→C	5.1%	I209S (ATC→AGC) ‡	aspA ←	aspartate ammonia‑lyase
RA	4,376,280	G→A	5.3%	intergenic (+15/‑37)	efp → / → ecnA	polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA	4,376,291	T→C	5.5%	intergenic (+26/‑26)	efp → / → ecnA	polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA	4,385,206	T→A	5.3%	P456P (CCT→CCA)	yjeM →	putative transporter
RA	4,385,207	G→C	6.5%	V457L (GTG→CTG) ‡	yjeM →	putative transporter
RA	4,385,208	T→A	5.3%	V457E (GTG→GAG) ‡	yjeM →	putative transporter
RA	4,385,359	T→A	5.8%	intergenic (+18/‑34)	yjeM → / → yjeN	putative transporter/uncharacterized protein
RA	4,385,360	A→G	5.2%	intergenic (+19/‑33)	yjeM → / → yjeN	putative transporter/uncharacterized protein
RA	4,385,361	C→G	5.8%	intergenic (+20/‑32)	yjeM → / → yjeN	putative transporter/uncharacterized protein
RA	4,385,362	C→T	5.9%	intergenic (+21/‑31)	yjeM → / → yjeN	putative transporter/uncharacterized protein
RA	4,385,363	T→A	6.3%	intergenic (+22/‑30)	yjeM → / → yjeN	putative transporter/uncharacterized protein
RA	4,388,502	G→C	5.6%	A290G (GCC→GGC)	mscM ←	mechanosensitive channel protein, miniconductance
RA	4,390,401	C→A	9.2%	intergenic (‑41/+56)	psd ← / ← rsgA	phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A
RA	4,390,403	A→G	9.2%	intergenic (‑43/+54)	psd ← / ← rsgA	phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A
RA	4,390,404	C→T	9.3%	intergenic (‑44/+53)	psd ← / ← rsgA	phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A
RA	4,390,406	T→G	9.3%	intergenic (‑46/+51)	psd ← / ← rsgA	phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A
RA	4,392,231	T→A	5.8%	intergenic (+82/‑129)	orn → / → glyV	oligoribonuclease/tRNA‑Gly
RA	4,400,322	T→C	6.9%	L12P (CTG→CCG)	hfq →	global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication
RA	4,400,324	Δ1 bp	6.3%	coding (37/309 nt)	hfq →	global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication
RA	4,400,330	C→G	6.3%	L15V (CTG→GTG)	hfq →	global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication
RA	4,400,334:1	+T	5.8%	coding (47/309 nt)	hfq →	global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication
RA	4,400,337	G→A	5.8%	R17Q (CGG→CAG)	hfq →	global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication
RA	4,406,129	T→C	100%	intergenic (+144/‑61)	purA → / → nsrR	adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon
RA	4,410,034	G→A	6.0%	intergenic (+28/‑99)	rlmB → / → yjfI	23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein
RA	4,410,037	T→C	6.1%	intergenic (+31/‑96)	rlmB → / → yjfI	23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein
RA	4,429,112:1	+G	8.3%	coding (178/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	4,429,120	Δ1 bp	8.8%	coding (186/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	4,429,125	A→G	8.6%	E64G (GAA→GGA)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	4,429,127	A→T	9.0%	I65F (ATC→TTC) ‡	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	4,429,129	C→T	8.6%	I65I (ATC→ATT) ‡	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	4,429,133:1	+C	8.4%	coding (199/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA	4,439,845	T→A	9.1%	intergenic (+52/+27)	ytfK → / ← ytfL	DUF1107 family protein/UPF0053 family inner membrane protein
RA	4,455,418	T→G	5.1%	K64N (AAA→AAC)	fbp ←	fructose‑1,6‑bisphosphatase I
RA	4,457,203	T→G	5.0%	intergenic (+45/+111)	mpl → / ← yjgA	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein
RA	4,469,455	A→G	9.7%	T611A (ACC→GCC) ‡	mgtA →	magnesium transporter
RA	4,469,456	C→G	8.9%	T611S (ACC→AGC) ‡	mgtA →	magnesium transporter
RA	4,469,457	C→T	9.1%	T611T (ACC→ACT) ‡	mgtA →	magnesium transporter
RA	4,470,951	A→C	5.8%	intergenic (‑38/+35)	ridA ← / ← pyrI	enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA	4,470,952	T→C	5.9%	intergenic (‑39/+34)	ridA ← / ← pyrI	enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA	4,470,957	G→A	6.1%	intergenic (‑44/+29)	ridA ← / ← pyrI	enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA	4,470,958	G→T	5.5%	intergenic (‑45/+28)	ridA ← / ← pyrI	enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA	4,479,012	A→T	9.2%	intergenic (+123/+22)	rraB → / ← yjgM	protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA	4,479,016	G→C	9.2%	intergenic (+127/+18)	rraB → / ← yjgM	protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA	4,479,020	A→T	9.3%	intergenic (+131/+14)	rraB → / ← yjgM	protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA	4,491,163	T→G	7.5%	intergenic (‑24/+43)	idnR ← / ← idnT	transcriptional repressor, 5‑gluconate‑binding/L‑idonate and D‑gluconate transporter
RA	4,491,164	C→A	6.7%	intergenic (‑25/+42)	idnR ← / ← idnT	transcriptional repressor, 5‑gluconate‑binding/L‑idonate and D‑gluconate transporter
RA	4,491,167	C→G	7.5%	intergenic (‑28/+39)	idnR ← / ← idnT	transcriptional repressor, 5‑gluconate‑binding/L‑idonate and D‑gluconate transporter
RA	4,491,170	T→G	6.7%	intergenic (‑31/+36)	idnR ← / ← idnT	transcriptional repressor, 5‑gluconate‑binding/L‑idonate and D‑gluconate transporter
RA	4,491,171	C→A	6.3%	intergenic (‑32/+35)	idnR ← / ← idnT	transcriptional repressor, 5‑gluconate‑binding/L‑idonate and D‑gluconate transporter
RA	4,496,511	A→G	10.1%	intergenic (+22/‑164)	leuX → / → intB	tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase
RA	4,496,512	C→T	10.0%	intergenic (+23/‑163)	leuX → / → intB	tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase
RA	4,499,885	C→G	5.0%	pseudogene (650/942 nt)	yjgX ←	pseudogene fragment
RA	4,499,887	G→C	5.0%	pseudogene (648/942 nt)	yjgX ←	pseudogene fragment
RA	4,499,889	C→G	5.0%	pseudogene (646/942 nt)	yjgX ←	pseudogene fragment
RA	4,502,105	A→G	6.7%	*443Q (TAA→CAA)	insG ←	IS4 transposase
RA	4,502,106	A→C	6.7%	A442A (GCT→GCG) ‡	insG ←	IS4 transposase
RA	4,502,107	G→T	6.7%	A442D (GCT→GAT) ‡	insG ←	IS4 transposase
RA	4,502,108	C→T	6.6%	A442T (GCT→ACT) ‡	insG ←	IS4 transposase
RA	4,510,334	G→T	8.0%	intergenic (+201/+356)	yjhV → / ← fecE	pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase
RA	4,510,335	C→G	7.6%	intergenic (+202/+355)	yjhV → / ← fecE	pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase
RA	4,510,336	A→C	7.3%	intergenic (+203/+354)	yjhV → / ← fecE	pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase
RA	4,517,556	T→G	6.6%	E54D (GAA→GAC) ‡	fecR ←	anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator
RA	4,517,557	T→A	6.6%	E54V (GAA→GTA) ‡	fecR ←	anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator
RA	4,517,558	C→A	6.7%	E54* (GAA→TAA) ‡	fecR ←	anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator
RA	4,519,311	A→G	6.8%	intergenic (+87/+27)	insB1 → / ← yjhU	IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element
RA	4,519,313	C→A	6.8%	intergenic (+89/+25)	insB1 → / ← yjhU	IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element
RA	4,519,314	T→G	6.9%	intergenic (+90/+24)	insB1 → / ← yjhU	IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element
RA	4,519,316	C→T	6.8%	intergenic (+92/+22)	insB1 → / ← yjhU	IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element
RA	4,523,472	A→C	5.1%	F208C (TTC→TGC)	yjhG ←	putative dehydratase
RA	4,529,492	G→A	6.7%	A251V (GCA→GTA)	sgcC ←	putative PTS system EIIC permease component
RA	4,529,496	C→T	5.9%	A250T (GCG→ACG)	sgcC ←	putative PTS system EIIC permease component
RA	4,529,497	A→T	6.4%	V249V (GTT→GTA) ‡	sgcC ←	putative PTS system EIIC permease component
RA	4,529,498	A→G	6.8%	V249A (GTT→GCT) ‡	sgcC ←	putative PTS system EIIC permease component
RA	4,529,502	T→C	6.0%	T248A (ACC→GCC)	sgcC ←	putative PTS system EIIC permease component
RA	4,537,639	T→G	5.6%	intergenic (‑45/+20)	nanS ← / ← nanM	9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA	4,537,640	T→G	5.1%	intergenic (‑46/+19)	nanS ← / ← nanM	9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA	4,537,643	C→A	5.9%	intergenic (‑49/+16)	nanS ← / ← nanM	9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA	4,537,644	C→A	5.5%	intergenic (‑50/+15)	nanS ← / ← nanM	9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA	4,543,601	A→C	6.1%	T163P (ACC→CCC)	fimA →	major type 1 subunit fimbrin (pilin)
RA	4,543,608	C→T	6.0%	A165V (GCC→GTC) ‡	fimA →	major type 1 subunit fimbrin (pilin)
RA	4,543,609	C→T	5.1%	A165A (GCC→GCT) ‡	fimA →	major type 1 subunit fimbrin (pilin)
RA	4,543,612	A→G	5.3%	A166A (GCA→GCG)	fimA →	major type 1 subunit fimbrin (pilin)
RA	4,543,613	A→G	5.5%	T167A (ACC→GCC)	fimA →	major type 1 subunit fimbrin (pilin)
RA	4,544,911	T→A	6.3%	V203E (GTG→GAG)	fimC →	periplasmic chaperone
RA	4,548,400	G→A	5.4%	C39Y (TGT→TAT) ‡	fimG →	minor component of type 1 fimbriae
RA	4,548,401	T→C	5.4%	C39C (TGT→TGC) ‡	fimG →	minor component of type 1 fimbriae
RA	4,554,516	A→G	8.2%	intergenic (+155/‑60)	uxuB → / → uxuR	D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
RA	4,554,517	A→C	7.9%	intergenic (+156/‑59)	uxuB → / → uxuR	D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
RA	4,554,523	T→G	7.8%	intergenic (+162/‑53)	uxuB → / → uxuR	D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
RA	4,554,524	C→A	7.5%	intergenic (+163/‑52)	uxuB → / → uxuR	D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor
RA	4,573,188	G→A	6.3%	pseudogene (775/1503 nt)	yjiT →	pseudogene
RA	4,573,189	T→C	6.3%	pseudogene (776/1503 nt)	yjiT →	pseudogene
RA	4,591,498	T→A	7.0%	intergenic (‑219/‑159)	yjiY ← / → tsr	putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
RA	4,591,499	C→T	6.9%	intergenic (‑220/‑158)	yjiY ← / → tsr	putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
RA	4,591,500	A→G	7.4%	intergenic (‑221/‑157)	yjiY ← / → tsr	putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
RA	4,591,501	T→A	7.1%	intergenic (‑222/‑156)	yjiY ← / → tsr	putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
RA	4,592,199	C→T	7.5%	A181A (GCC→GCT)	tsr →	methyl‑accepting chemotaxis protein I, serine sensor receptor
RA	4,592,201	T→A	7.5%	V182D (GTC→GAC)	tsr →	methyl‑accepting chemotaxis protein I, serine sensor receptor
RA	4,592,203	A→G	7.3%	S183G (AGC→GGC)	tsr →	methyl‑accepting chemotaxis protein I, serine sensor receptor
RA	4,593,430	G→T	6.0%	V431V (GTC→GTA) ‡	lgoT ←	putative L‑galactonate:H+ symporter
RA	4,593,431	A→G	7.4%	V431A (GTC→GCC) ‡	lgoT ←	putative L‑galactonate:H+ symporter
RA	4,593,434	C→T	6.5%	C430Y (TGC→TAC) ‡	lgoT ←	putative L‑galactonate:H+ symporter
RA	4,593,435	A→C	6.2%	C430G (TGC→GGC) ‡	lgoT ←	putative L‑galactonate:H+ symporter
RA	4,604,753	T→A	5.5%	S198R (AGT→AGA)	bglJ →	bgl operon transcriptional activator
RA	4,604,754	T→A	6.1%	S199T (TCT→ACT)	bglJ →	bgl operon transcriptional activator
RA	4,608,604	C→G	8.3%	I140M (ATC→ATG)	rimI →	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
RA	4,608,607	C→G	8.2%	I141M (ATC→ATG)	rimI →	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
RA	4,612,329	A→G	7.1%	intergenic (+40/‑82)	ytjA → / → yjjU	uncharacterized protein/putative patatin‑like family phospholipase
RA	4,612,330	G→C	6.8%	intergenic (+41/‑81)	ytjA → / → yjjU	uncharacterized protein/putative patatin‑like family phospholipase
RA	4,612,331	C→T	6.9%	intergenic (+42/‑80)	ytjA → / → yjjU	uncharacterized protein/putative patatin‑like family phospholipase
RA	4,639,554	A→T	9.7%	intergenic (+24/+36)	creD → / ← arcA	inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA
RA	4,639,555	A→T	9.7%	intergenic (+25/+35)	creD → / ← arcA	inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA
RA	4,639,556	A→T	9.6%	intergenic (+26/+34)	creD → / ← arcA	inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA
RA	4,639,557	A→T	9.8%	intergenic (+27/+33)	creD → / ← arcA	inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA
RA	4,639,901	T→G	5.4%	S136R (AGC→CGC)	arcA ←	response regulator in two‑component regulatory system with ArcB or CpxA
JC JC	4,640,551	IS1 (–) +9 bp	100%	intergenic (+9/‑383)	yjjY → / → yjtD	uncharacterized protein/putative methyltransferase

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	772998	774222	1225	45 [40]	[43] 45	[cydA]–[cydX]	[cydA],cydB,[cydX]
*	*	÷	NC_000913	1037672	1039322	1651	45 [42]	[43] 44	cbdA–[cbdB]	cbdA,[cbdB]
*	*	÷	NC_000913	2403919	2404673	755	45 [43]	[43] 44	nuoB–[nuoA]	nuoB,[nuoA]
*	*	÷	NC_000913	3423760–3424555	3424555	1–796	44 [41]	[43] 44	[rrfD]–[rrlD]	[rrfD],[rrlD]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 16653	NA (NA)	6 (0.060)	5/264	NT	NA	noncoding (1267/1345 nt)	IS186	repeat region
	?	NC_000913	= 16691	NA (NA)					noncoding (1305/1345 nt)	IS186	repeat region
*	?	NC_000913	= 64557	99 (1.000)	6 (0.060)	5/260	NT	6.0%	coding (1224/2352 nt)	polB	DNA polymerase II
	?	NC_000913	= 64577	97 (1.050)					coding (1204/2352 nt)	polB	DNA polymerase II
*	?	NC_000913	= 224210	NA (NA)	6 (0.060)	5/272	NT	NA	noncoding (440/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913	= 224263	NA (NA)					noncoding (493/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
*	?	NC_000913	225136 =	NA (NA)	5 (0.050)	5/272	NT	NA	noncoding (1366/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913	225187 =	NA (NA)					noncoding (1417/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
*	?	NC_000913	= 225949	NA (NA)	5 (0.050)	4/264	NT	NA	noncoding (191/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	= 225991	NA (NA)					noncoding (233/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
*	?	NC_000913	= 225998	NA (NA)	6 (0.060)	6/270	NT	NA	noncoding (240/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	= 226015	NA (NA)					noncoding (257/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
*	?	NC_000913	= 227039	74 (0.750)	3 (0.030)	3/266	NT	5.1%	noncoding (1281/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	= 4038805	40 (0.420)					noncoding (1287/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
*	?	NC_000913	258317 =	NA (NA)	10 (0.100)	3/278	NT	NA	noncoding (359/768 nt)	IS1	repeat region
	?	NC_000913	= 1050074	NA (NA)					noncoding (297/768 nt)	IS1	repeat region
*	?	NC_000913	273987 =	NA (NA)	4 (0.040)	4/266	NT	NA	noncoding (1163/1195 nt)	IS5	repeat region
	?	NC_000913	274057 =	NA (NA)					noncoding (1093/1195 nt)	IS5	repeat region
*	?	NC_000913	= 274342	NA (NA)	3 (0.030)	3/274	NT	NA	noncoding (808/1195 nt)	IS5	repeat region
	?	NC_000913	= 274386	NA (NA)					noncoding (764/1195 nt)	IS5	repeat region
*	?	NC_000913	= 274347	NA (NA)	4 (0.040)	3/270	NT	NA	noncoding (803/1195 nt)	IS5	repeat region
	?	NC_000913	= 274381	NA (NA)					noncoding (769/1195 nt)	IS5	repeat region
*	?	NC_000913	274384 =	NA (NA)	8 (0.080)	7/272	NT	NA	noncoding (766/1195 nt)	IS5	repeat region
	?	NC_000913	274422 =	NA (NA)					noncoding (728/1195 nt)	IS5	repeat region
*	?	NC_000913	= 274531	NA (NA)	3 (0.030)	3/264	NT	NA	noncoding (619/1195 nt)	IS5	repeat region
	?	NC_000913	= 274551	NA (NA)					noncoding (599/1195 nt)	IS5	repeat region
*	?	NC_000913	274620 =	NA (NA)	9 (0.100)	6/260	NT	NA	noncoding (530/1195 nt)	IS5	repeat region
	?	NC_000913	274663 =	NA (NA)					noncoding (487/1195 nt)	IS5	repeat region
*	?	NC_000913	274692 =	NA (NA)	9 (0.090)	5/270	NT	NA	noncoding (458/1195 nt)	IS5	repeat region
	?	NC_000913	274732 =	NA (NA)					noncoding (418/1195 nt)	IS5	repeat region
*	?	NC_000913	315563 =	NA (NA)	6 (0.070)	5/258	NT	NA	noncoding (335/1255 nt)	IS3	repeat region
	?	NC_000913	315599 =	NA (NA)					noncoding (371/1255 nt)	IS3	repeat region
*	?	NC_000913	315790 =	NA (NA)	3 (0.030)	3/262	NT	NA	noncoding (562/1255 nt)	IS3	repeat region
	?	NC_000913	315864 =	NA (NA)					noncoding (636/1255 nt)	IS3	repeat region
*	?	NC_000913	316193 =	NA (NA)	5 (0.050)	4/260	NT	NA	noncoding (965/1255 nt)	IS3	repeat region
	?	NC_000913	316230 =	NA (NA)					noncoding (1002/1255 nt)	IS3	repeat region
*	?	NC_000913	= 329836	87 (0.880)	6 (0.060)	6/270	NT	6.8%	coding (374/2034 nt)	betT	choline transporter of high affinity
	?	NC_000913	= 329872	80 (0.830)					coding (410/2034 nt)	betT	choline transporter of high affinity
*	?	NC_000913	= 368554	117 (1.180)	7 (0.070)	5/264	NT	5.9%	intergenic (‑134/‑57)	mhpR/mhpA	mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase
	?	NC_000913	= 368583	113 (1.200)					intergenic (‑163/‑28)	mhpR/mhpA	mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase
*	?	NC_000913	381663 =	NA (NA)	8 (0.090)	6/264	NT	NA	noncoding (404/1331 nt)	IS2	repeat region
	?	NC_000913	381703 =	NA (NA)					noncoding (444/1331 nt)	IS2	repeat region
*	?	NC_000913	= 381669	NA (NA)	8 (0.090)	5/264	NT	NA	noncoding (410/1331 nt)	IS2	repeat region
	?	NC_000913	= 381695	NA (NA)					noncoding (436/1331 nt)	IS2	repeat region
*	?	NC_000913	381681 =	NA (NA)	5 (0.050)	4/260	NT	NA	noncoding (422/1331 nt)	IS2	repeat region
	?	NC_000913	381753 =	NA (NA)					noncoding (494/1331 nt)	IS2	repeat region
*	?	NC_000913	383676 =	70 (0.710)	5 (0.050)	3/262	NT	7.2%	coding (260/1197 nt)	yaiP	putative family 2 glycosyltransferase
	?	NC_000913	383719 =	63 (0.680)					coding (217/1197 nt)	yaiP	putative family 2 glycosyltransferase
*	?	NC_000913	416968 =	94 (0.950)	6 (0.060)	4/262	NT	6.5%	intergenic (‑16/‑174)	sbcD/phoB	exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR
	?	NC_000913	417017 =	83 (0.890)					intergenic (‑65/‑125)	sbcD/phoB	exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR
*	?	NC_000913	= 566904	10 (0.100)	3 (0.030)	3/268	NT	23.7%	noncoding (128/1258 nt)	IS3	repeat region
	?	NC_000913	= 566937	NA (NA)					noncoding (161/1258 nt)	IS3	repeat region
*	?	NC_000913	580753 =	69 (0.700)	4 (0.050)	4/246	NT	5.7%	intergenic (‑308/‑81)	ylcI/nohD	DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
	?	NC_000913	580810 =	71 (0.810)					intergenic (‑365/‑24)	ylcI/nohD	DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
*	?	NC_000913	= 580768	69 (0.700)	4 (0.050)	3/246	NT	5.7%	intergenic (‑323/‑66)	ylcI/nohD	DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
	?	NC_000913	= 580793	71 (0.810)					intergenic (‑348/‑41)	ylcI/nohD	DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
*	?	NC_000913	= 609439	111 (1.120)	7 (0.110) +46 bp	6/186	NT	8.6%	intergenic (+262/+20)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
	?	NC_000913	= 2515627	NA (NA)					intergenic (+184/+16)	insL1/yfeA	IS186 transposase/putative diguanylate cyclase
*	?	NC_000913	680062 =	105 (1.060)	6 (0.060)	5/264	NT	5.8%	coding (555/708 nt)	ybeU	DUF1266 family protein
	?	NC_000913	680093 =	96 (1.020)					coding (586/708 nt)	ybeU	DUF1266 family protein
*	?	NC_000913	725947 =	89 (0.900)	6 (0.060)	4/262	NT	6.9%	coding (1090/2049 nt)	kdpB	potassium translocating ATPase, subunit B
	?	NC_000913	726066 =	78 (0.840)					coding (971/2049 nt)	kdpB	potassium translocating ATPase, subunit B
*	?	NC_000913	752867 =	100 (1.010)	8 (0.090)	6/256	NT	8.5%	intergenic (‑72/+318)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
	?	NC_000913	752916 =	80 (0.880)					intergenic (‑121/+269)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
*	?	NC_000913	801524 =	80 (0.810)	7 (0.070)	5/264	NT	7.9%	coding (766/1053 nt)	ybhH	putative PrpF family isomerase
	?	NC_000913	801591 =	88 (0.940)					coding (833/1053 nt)	ybhH	putative PrpF family isomerase
*	?	NC_000913	896031 =	75 (0.760)	6 (0.060)	5/266	NT	7.8%	coding (1041/1134 nt)	potG	putrescine ABC transporter ATPase
	?	NC_000913	896085 =	70 (0.740)					coding (1095/1134 nt)	potG	putrescine ABC transporter ATPase
*	?	NC_000913	= 1138141	111 (1.120)	6 (0.060)	6/270	NT	5.1%	coding (771/942 nt)	flgJ	flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase
	?	NC_000913	= 1138173	114 (1.190)					coding (803/942 nt)	flgJ	flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase
*	?	NC_000913	1205159 =	74 (0.750)	4 (0.040)	4/258	NT	5.5%	pseudogene (756/1134 nt)	aaaE	pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related
	?	NC_000913	1205208 =	68 (0.740)					pseudogene (805/1134 nt)	aaaE	pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related
*	?	NC_000913	1207790 =	44 (0.440)	33 (0.380)	29/246	NT	44.6%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	43 (0.490)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	NC_000913	= 1207805	43 (0.430)	39 (0.450)	33/246	NT	49.1%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	43 (0.490)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	NC_000913	1312122 =	91 (0.920)	7 (0.070)	5/268	NT	7.5%	coding (125/399 nt)	yciA	acyl‑CoA esterase
	?	NC_000913	1312189 =	86 (0.900)					coding (58/399 nt)	yciA	acyl‑CoA esterase
*	?	NC_000913	= 1324864	69 (0.700)	4 (0.040)	3/258	NT	5.3%	coding (119/1896 nt)	yciQ	enhancer of membrane protein expression; putative inner membrane protein
	?	NC_000913	= 1324896	79 (0.860)					coding (151/1896 nt)	yciQ	enhancer of membrane protein expression; putative inner membrane protein
*	?	NC_000913	= 1390173	67 (0.680)	5 (0.050)	3/268	NT	7.3%	coding (426/729 nt)	mpaA	murein peptide amidase A
	?	NC_000913	= 1390253	62 (0.650)					coding (346/729 nt)	mpaA	murein peptide amidase A
*	?	NC_000913	= 1428264	NA (NA)	12 (0.130)	8/266	NT	80.7%	noncoding (531/1196 nt)	IS5	repeat region
	?	NC_000913	= 2066866	3 (0.030)					noncoding (488/1195 nt)	IS5	repeat region
*	?	NC_000913	= 1434736	72 (0.730)	5 (0.050)	4/262	NT	7.0%	intergenic (‑512/+222)	ynaE/ttcC	cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related
	?	NC_000913	= 1434758	66 (0.710)					intergenic (‑534/+200)	ynaE/ttcC	cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related
*	?	NC_000913	1469941 =	NA (NA)	5 (0.050)	4/266	NT	NA	noncoding (646/1221 nt)	IS30	repeat region
	?	NC_000913	1469976 =	NA (NA)					noncoding (681/1221 nt)	IS30	repeat region
*	?	NC_000913	= 1874646	76 (0.770)	4 (0.040)	3/266	NT	5.2%	coding (295/447 nt)	yeaL	UPF0756 family putative inner membrane protein
	?	NC_000913	= 1874674	73 (0.770)					coding (323/447 nt)	yeaL	UPF0756 family putative inner membrane protein
*	?	NC_000913	= 1900573	68 (0.690)	4 (0.040)	3/262	NT	5.6%	coding (1013/1557 nt)	yoaE	putative membrane protein/conserved protein
	?	NC_000913	= 1900594	70 (0.750)					coding (992/1557 nt)	yoaE	putative membrane protein/conserved protein
*	?	NC_000913	= 1911714	81 (0.820)	6 (0.060)	4/266	NT	7.1%	coding (863/882 nt)	htpX	putative endopeptidase
	?	NC_000913	= 1911745	80 (0.840)					coding (832/882 nt)	htpX	putative endopeptidase
*	?	NC_000913	= 2156463	91 (0.920)	5 (0.050)	5/262	NT	5.3%	coding (1201/3123 nt)	mdtB	multidrug efflux system, subunit B
	?	NC_000913	= 2156493	92 (0.990)					coding (1231/3123 nt)	mdtB	multidrug efflux system, subunit B
*	?	NC_000913	2190617 =	97 (0.980)	5 (0.050)	3/260	NT	5.1%	coding (294/2481 nt)	yehB	putative outer membrane protein
	?	NC_000913	2190656 =	95 (1.030)					coding (255/2481 nt)	yehB	putative outer membrane protein
*	?	NC_000913	2199929 =	98 (0.990)	7 (0.070)	4/264	NT	7.3%	pseudogene (608/948 nt)	yehH	DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function
	?	NC_000913	2199971 =	86 (0.910)					pseudogene (650/948 nt)	yehH	DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function
*	?	NC_000913	2200832 =	86 (0.870)	4 (0.040)	4/260	NT	5.2%	coding (554/3633 nt)	yehI	DUF4132 domain‑containing protein
	?	NC_000913	2200923 =	65 (0.700)					coding (645/3633 nt)	yehI	DUF4132 domain‑containing protein
*	?	NC_000913	2203569 =	90 (0.910)	5 (0.050)	5/272	NT	5.6%	coding (3291/3633 nt)	yehI	DUF4132 domain‑containing protein
	?	NC_000913	2203611 =	82 (0.850)					coding (3333/3633 nt)	yehI	DUF4132 domain‑containing protein
*	?	NC_000913	= 2304341	76 (0.770)	5 (0.050)	5/272	NT	6.0%	coding (437/489 nt)	eco	ecotin, a serine protease inhibitor
	?	NC_000913	= 2304385	83 (0.860)					coding (481/489 nt)	eco	ecotin, a serine protease inhibitor
*	?	NC_000913	= 2371099	72 (0.730)	4 (0.040)	4/262	NT	5.4%	coding (192/1653 nt)	arnT	4‑amino‑4‑deoxy‑L‑arabinose transferase
	?	NC_000913	= 2371121	71 (0.760)					coding (214/1653 nt)	arnT	4‑amino‑4‑deoxy‑L‑arabinose transferase
*	?	NC_000913	= 2373541	84 (0.850)	6 (0.070)	5/252	NT	6.4%	intergenic (‑3/+107)	pmrD/menE	inactive two‑component system connector protein/O‑succinylbenzoate‑CoA ligase
	?	NC_000913	= 2373606	99 (1.100)					intergenic (‑68/+42)	pmrD/menE	inactive two‑component system connector protein/O‑succinylbenzoate‑CoA ligase
*	?	NC_000913	2577375 =	87 (0.880)	6 (0.060)	5/262	NT	7.4%	coding (1003/2280 nt)	maeB	malic enzyme: putative oxidoreductase/phosphotransacetylase
	?	NC_000913	2577422 =	69 (0.740)					coding (956/2280 nt)	maeB	malic enzyme: putative oxidoreductase/phosphotransacetylase
*	?	NC_000913	2617987 =	NA (NA)	5 (0.050)	4/272	NT	5.2%	noncoding (20/37 nt)	REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2618045 =	92 (0.950)					intergenic (+108/+30)	yfgD/hda	putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
*	?	NC_000913	2710656 =	106 (1.070)	5 (0.050)	5/264	NT	5.1%	coding (237/1623 nt)	nadB	quinolinate synthase, L‑aspartate oxidase (B protein) subunit
	?	NC_000913	2710758 =	84 (0.890)					coding (339/1623 nt)	nadB	quinolinate synthase, L‑aspartate oxidase (B protein) subunit
*	?	NC_000913	2726078 =	NA (NA)	5 (0.050)	5/262	NT	17.5%	noncoding (111/120 nt)	rrfG	5S ribosomal RNA of rrnG operon
	?	NC_000913	2726181 =	25 (0.250)					noncoding (8/120 nt)	rrfG	5S ribosomal RNA of rrnG operon
*	?	NC_000913	2729443 =	53 (0.540)	6 (0.070)	4/258	NT	10.4%	noncoding (2/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	2729485 =	54 (0.590)					intergenic (‑41/+131)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
*	?	NC_000913	= 2797326	77 (0.780)	4 (0.040)	3/268	NT	5.3%	coding (116/300 nt)	ygaV	tributyltin‑inducible repressor of ygaVP
	?	NC_000913	= 2797361	69 (0.720)					coding (151/300 nt)	ygaV	tributyltin‑inducible repressor of ygaVP
*	?	NC_000913	3339613 =	104 (1.050)	6 (0.060)	5/260	NT	5.7%	coding (453/810 nt)	mlaF	ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein
	?	NC_000913	3339717 =	101 (1.090)					coding (349/810 nt)	mlaF	ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein
*	?	NC_000913	= 3462359	85 (0.860)	6 (0.070)	4/258	NT	6.8%	coding (16/588 nt)	gspJ	putative general secretory pathway component, cryptic
	?	NC_000913	= 3462390	85 (0.930)					coding (47/588 nt)	gspJ	putative general secretory pathway component, cryptic
*	?	NC_000913	= 3493578	108 (1.090)	6 (0.060)	6/262	NT	5.6%	coding (1011/1182 nt)	tsgA	putative transporter
	?	NC_000913	= 3493634	99 (1.060)					coding (1067/1182 nt)	tsgA	putative transporter
*	?	NC_000913	= 3521823	99 (1.000)	6 (0.060)	5/260	NT	6.0%	coding (150/540 nt)	hofN	DNA catabolic putative fimbrial assembly protein
	?	NC_000913	= 3521847	96 (1.040)					coding (126/540 nt)	hofN	DNA catabolic putative fimbrial assembly protein
*	?	NC_000913	= 3557740	74 (0.750)	4 (0.040)	4/264	NT	5.2%	coding (340/1227 nt)	rtcB	RNA‑splicing ligase
	?	NC_000913	= 3557761	76 (0.810)					coding (319/1227 nt)	rtcB	RNA‑splicing ligase
*	?	NC_000913	= 3620220	NA (NA)	4 (0.040)	4/266	NT	100%	coding (1029/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	= 3620255	0 (0.000)					coding (1064/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*	?	NC_000913	= 3620363	NA (NA)	6 (0.060)	6/268	NT	100%	coding (1172/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	= 3620412	0 (0.000)					coding (1221/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*	?	NC_000913	3621316 =	NA (NA)	4 (0.040)	4/264	NT	100%	coding (2125/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3621406 =	0 (0.000)					coding (2215/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*	?	NC_000913	3655827 =	118 (1.190)	6 (0.060)	5/272	NT	5.1%	coding (76/648 nt)	yhiD	putative Mg(2+) transport ATPase, inner membrane protein
	?	NC_000913	3655867 =	106 (1.090)					coding (36/648 nt)	yhiD	putative Mg(2+) transport ATPase, inner membrane protein
*	?	NC_000913	3840055 =	116 (1.170)	6 (0.060)	5/260	NT	5.4%	intergenic (‑62/‑160)	nlpA/yicS	cytoplasmic membrane lipoprotein‑28/putative periplasmic protein
	?	NC_000913	3840141 =	102 (1.100)					intergenic (‑148/‑74)	nlpA/yicS	cytoplasmic membrane lipoprotein‑28/putative periplasmic protein
*	?	NC_000913	= 3905650	90 (0.910)	5 (0.060)	4/248	NT	5.7%	intergenic (‑53/+81)	bglF/bglG	fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon
	?	NC_000913	= 3905672	86 (0.970)					intergenic (‑75/+59)	bglF/bglG	fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon
*	?	NC_000913	3943544 =	7 (0.070)	3 (0.030)	3/256	NT	14.5%	intergenic (+34/‑160)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA of rrnC operon
	?	NC_000913	4209923 =	29 (0.320)					intergenic (+74/‑120)	gltV/rrlE	tRNA‑Glu/23S ribosomal RNA of rrnE operon
*	?	NC_000913	= 3944978	NA (NA)	29 (0.310)	15/266	NT	43.1%	noncoding (1275/2904 nt)	rrlC	23S ribosomal RNA of rrnC operon
	?	NC_000913	= 4038811	40 (0.400)					noncoding (1293/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
*	?	NC_000913	= 4023769	93 (0.940)	6 (0.060)	4/266	NT	6.5%	coding (216/783 nt)	tatD	quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase
	?	NC_000913	= 4023797	85 (0.900)					coding (244/783 nt)	tatD	quality control of Tat‑exported FeS proteins; Mg‑dependent cytoplasmic DNase
*	?	NC_000913	= 4035244	57 (0.580)	4 (0.040)	4/268	NT	8.2%	intergenic (+91/‑287)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
	?	NC_000913	= 4035271	35 (0.370)					intergenic (+118/‑260)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
*	?	NC_000913	= 4064658	129 (1.300)	10 (0.110)	7/260	NT	7.3%	coding (1109/1404 nt)	yihO	putative sulphoquinovose importer
	?	NC_000913	= 4064678	134 (1.450)					coding (1089/1404 nt)	yihO	putative sulphoquinovose importer
*	?	NC_000913	= 4081273	74 (0.750)	5 (0.050)	5/260	NT	6.3%	coding (588/636 nt)	fdoI	formate dehydrogenase‑O, cytochrome b556 subunit
	?	NC_000913	= 4081294	80 (0.860)					coding (567/636 nt)	fdoI	formate dehydrogenase‑O, cytochrome b556 subunit
*	?	NC_000913	= 4341795	92 (0.930)	5 (0.060)	4/242	NT	5.5%	intergenic (‑167/‑116)	melR/melA	melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
	?	NC_000913	= 4341815	92 (1.070)					intergenic (‑187/‑96)	melR/melA	melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
*	?	NC_000913	= 4475331	97 (0.980)	12 (0.130)	7/258	NT	11.3%	intergenic (+17/‑106)	tabA/yjgL	biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein/SopA‑central‑domain‑like hexapeptide repeat protein
	?	NC_000913	= 4475341	98 (1.070)					intergenic (+27/‑96)	tabA/yjgL	biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein/SopA‑central‑domain‑like hexapeptide repeat protein
*	?	NC_000913	= 4545995	103 (1.040)	6 (0.060)	5/260	NT	5.6%	coding (900/2637 nt)	fimD	fimbrial usher outer membrane porin protein; FimCD chaperone‑usher
	?	NC_000913	= 4546071	107 (1.160)					coding (976/2637 nt)	fimD	fimbrial usher outer membrane porin protein; FimCD chaperone‑usher