mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 28 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4516889 | 191 (1.180) | 5 (0.030) | 3/276 | NT | 2.6% | coding (829/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | NC_000913 | = 4516925 | 183 (1.130) | coding (793/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | NC_000913 | 4513628 = | 195 (1.200) | 3 (0.020) | 3/268 | NT | 1.5% | coding (681/903 nt) | fecB | ferric citrate ABC transporter periplasmic binding protein |
| ? | NC_000913 | 4513725 = | 194 (1.240) | coding (584/903 nt) | fecB | ferric citrate ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 4429113 = | 219 (1.350) | 9 (0.060) | 6/264 | NT | 4.3% | coding (179/621 nt) | fklB | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| ? | NC_000913 | 4429141 = | 197 (1.280) | coding (207/621 nt) | fklB | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) | |||||
| * | ? | NC_000913 | 4377070 = | 165 (1.020) | 5 (0.030) | 3/266 | NT | 3.1% | coding (196/318 nt) | sugE | multidrug efflux system protein |
| ? | NC_000913 | 4377134 = | 150 (0.970) | coding (260/318 nt) | sugE | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 4310193 | 171 (1.050) | 3 (0.020) | 3/258 | NT | 1.7% | coding (788/1533 nt) | alsA | D‑allose ABC transporter ATPase |
| ? | NC_000913 | = 4310231 | 184 (1.220) | coding (750/1533 nt) | alsA | D‑allose ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 4155534 | 185 (1.140) | 3 (0.020) | 3/266 | NT | 1.7% | coding (534/1005 nt) | argC | N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding |
| ? | NC_000913 | = 4155577 | 171 (1.100) | coding (577/1005 nt) | argC | N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 4135600 = | 212 (1.300) | 6 (0.040) | 3/266 | NT | 3.0% | coding (1766/2181 nt) | katG | catalase‑peroxidase HPI, heme b‑containing |
| ? | NC_000913 | 4135675 = | 180 (1.160) | coding (1841/2181 nt) | katG | catalase‑peroxidase HPI, heme b‑containing | |||||
| * | ? | NC_000913 | = 4094350 | 224 (1.380) | 4 (0.040) | 4/196 | NT | 2.3% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 189 (1.660) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | 3599212 = | 170 (1.050) | 6 (0.040) | 4/268 | NT | 3.6% | coding (447/1104 nt) | livJ | branched‑chain amino acid ABC transporter periplasmic binding protein |
| ? | NC_000913 | 3599237 = | 153 (0.980) | coding (422/1104 nt) | livJ | branched‑chain amino acid ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3596180 = | 161 (0.990) | 6 (0.040) | 3/262 | NT | 3.6% | coding (224/927 nt) | livH | branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 | 3596256 = | 170 (1.110) | coding (148/927 nt) | livH | branched‑chain amino acid ABC transporter permease | |||||