mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 66 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4576863 = | 218 (0.770) | 4 (0.020) | 4/258 | NT | 2.0% | intergenic (+8/+49) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| ? | NC_000913 | 4576890 = | 193 (0.730) | intergenic (+35/+22) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC | |||||
| * | ? | NC_000913 | = 4542690 | 232 (0.820) | 5 (0.020) | 5/260 | NT | 2.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 252 (0.950) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4430322 | 306 (1.080) | 8 (0.030) | 3/262 | NT | 2.8% | coding (459/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | NC_000913 | = 4430408 | 270 (1.010) | coding (545/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | NC_000913 | = 4341795 | 267 (0.940) | 3 (0.010) | 3/242 | NT | 1.2% | intergenic (‑167/‑116) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | = 4341815 | 255 (1.030) | intergenic (‑187/‑96) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 4322583 = | 304 (1.070) | 3 (0.010) | 3/274 | NT | 1.0% | pseudogene (232/372 nt) | phnE | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily |
| ? | NC_000913 | 4322610 = | 288 (1.030) | pseudogene (205/372 nt) | phnE | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily | |||||
| * | ? | NC_000913 | = 4179656 | 248 (0.870) | 5 (0.020) | 3/266 | NT | 1.9% | intergenic (+73/‑340) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| ? | NC_000913 | = 4179766 | 267 (0.980) | intergenic (+183/‑230) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 | |||||
| * | ? | NC_000913 | 4178498 = | 257 (0.900) | 4 (0.010) | 4/272 | NT | 1.5% | coding (52/429 nt) | rplK | 50S ribosomal subunit protein L11 |
| ? | NC_000913 | 4178538 = | 268 (0.960) | coding (92/429 nt) | rplK | 50S ribosomal subunit protein L11 | |||||
| * | ? | NC_000913 | = 4094350 | 338 (1.190) | 4 (0.020) | 4/196 | NT | 1.4% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 315 (1.570) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | 4020306 = | 328 (1.150) | 5 (0.020) | 4/270 | NT | 1.6% | coding (81/1641 nt) | ubiB | regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase |
| ? | NC_000913 | 4020348 = | 310 (1.120) | coding (123/1641 nt) | ubiB | regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'‑N‑acetyltransferase; putative ABC1 family protein kinase | |||||
| * | ? | NC_000913 | 3998038 = | 289 (1.020) | 5 (0.020) | 3/264 | NT | 1.9% | coding (56/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II |
| ? | NC_000913 | 3998077 = | 239 (0.880) | coding (95/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II | |||||