mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 243 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4636330 | 116 (0.980) | 4 (0.040) | 3/264 | NT | 3.4% | coding (324/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | = 4636367 | 114 (1.020) | coding (361/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| * | ? | NC_000913 | = 4635629 | 137 (1.160) | 5 (0.040) | 4/266 | NT | 3.9% | coding (109/474 nt) | creA | putative periplasmic protein |
| ? | NC_000913 | = 4635693 | 116 (1.030) | coding (173/474 nt) | creA | putative periplasmic protein | |||||
| * | ? | NC_000913 | = 4621838 | 135 (1.150) | 4 (0.040) | 3/262 | NT | 3.0% | coding (70/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | = 4621865 | 136 (1.230) | coding (97/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | = 4607286 | 107 (0.910) | 5 (0.040) | 5/268 | NT | 4.5% | coding (415/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 4607339 | 107 (0.940) | coding (362/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 4593148 = | 105 (0.890) | 5 (0.050) | 3/262 | NT | 4.9% | coding (1492/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| ? | NC_000913 | = 4593144 | 96 (0.870) | coding (1488/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor | |||||
| * | ? | NC_000913 | = 4583137 | 129 (1.090) | 4 (0.040) | 4/266 | NT | 2.9% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 147 (1.300) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 4574555 = | 125 (1.060) | 4 (0.040) | 3/264 | NT | 3.6% | pseudogene (637/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | 4574591 = | 97 (0.870) | pseudogene (673/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| * | ? | NC_000913 | 4568311 = | 126 (1.070) | 3 (0.030) | 3/266 | NT | 2.5% | coding (209/1233 nt) | mdtM | multidrug efflux system protein |
| ? | NC_000913 | 4568374 = | 117 (1.040) | coding (146/1233 nt) | mdtM | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 4534139 | 141 (1.200) | 6 (0.050) | 4/258 | NT | 4.4% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 131 (1.200) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4531472 | 123 (1.040) | 4 (0.040) | 3/268 | NT | 3.2% | coding (180/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain |
| ? | NC_000913 | = 4531502 | 120 (1.060) | coding (150/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain | |||||