mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 48.8% | 0.7 / 115.6 | 88 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 225,465 | 0 | A | C | 25.9% | 22.2 / 13.6 | 27 | intergenic (+8/‑35) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913 | 225,466 | 0 | C | G | 25.9% | 36.9 / 16.7 | 27 | intergenic (+9/‑34) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913 | 1,552,191 | 0 | C | A | 25.9% | 90.5 / 18.2 | 58 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 225,467 | 0 | G | T | 25.0% | 38.0 / 12.3 | 28 | intergenic (+10/‑33) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| Marginal new junction evidence (lowest skew 10 of 665 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 19 (0.210) | 15/280 | 6.3 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 47 (0.500) | 15/286 | 6.5 | 87.5% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 7 (0.070) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 47 (0.500) | 15/286 | 6.5 | 38.3% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 79 (0.810) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 225154 = | NA (NA) | 20 (0.210) | 12/288 | 7.5 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 13 (0.140) | 11/278 | 7.6 | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 2057935 = | 94 (0.960) | 6 (0.100) +57 bp |
5/184 | 7.7 | 9.4% | intergenic (+361/+92) | yeeN/asnW | UPF0082 family protein/tRNA‑Asn |
| ? | NC_000913 | = 2062339 | 93 (0.950) | intergenic (+4/+52) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913 | 2057935 = | 94 (0.960) | 6 (0.100) +57 bp |
5/184 | 7.7 | 10.1% | intergenic (+361/+92) | yeeN/asnW | UPF0082 family protein/tRNA‑Asn |
| ? | NC_000913 | = 2059930 | 79 (0.810) | intergenic (+4/+34) | asnU/cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator | |||||
| * | ? | NC_000913 | 382237 = | NA (NA) | 11 (0.120) | 9/286 | 8.5 | NA | noncoding (978/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382267 = | NA (NA) | noncoding (1008/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 10 (0.100) | 9/290 | 8.6 | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3986248 = | 166 (1.690) | 8 (0.090) | 8/280 | 8.8 | 4.9% | intergenic (‑241/‑184) | aslA/glmZ | putative Ser‑type periplasmic non‑aryl sulfatase/sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913 | 3986273 = | 157 (1.700) | intergenic (‑266/‑159) | aslA/glmZ | putative Ser‑type periplasmic non‑aryl sulfatase/sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||