mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 139 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4568311 = | 140 (1.170) | 3 (0.030) | 3/266 | NT | 2.3% | coding (209/1233 nt) | mdtM | multidrug efflux system protein |
| ? | NC_000913 | 4568374 = | 117 (1.020) | coding (146/1233 nt) | mdtM | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 4555370 | 122 (1.020) | 4 (0.040) | 3/258 | NT | 3.3% | intergenic (+21/+120) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein |
| ? | NC_000913 | = 4555379 | 123 (1.100) | intergenic (+30/+111) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein | |||||
| * | ? | NC_000913 | = 4551007 | 115 (0.960) | 3 (0.030) | 3/262 | NT | 2.5% | coding (290/1344 nt) | gntP | fructuronate transporter |
| ? | NC_000913 | = 4551030 | 123 (1.090) | coding (267/1344 nt) | gntP | fructuronate transporter | |||||
| * | ? | NC_000913 | 4532860 = | 140 (1.170) | 3 (0.030) | 3/268 | NT | 2.1% | coding (324/747 nt) | yjhP | putative methyltransferase |
| ? | NC_000913 | 4532900 = | 144 (1.240) | coding (284/747 nt) | yjhP | putative methyltransferase | |||||
| * | ? | NC_000913 | 4481970 = | 131 (1.090) | 5 (0.040) | 4/268 | NT | 3.7% | coding (1868/2856 nt) | valS | valyl‑tRNA synthetase |
| ? | NC_000913 | 4482005 = | 133 (1.150) | coding (1833/2856 nt) | valS | valyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 4459372 | 130 (1.080) | 3 (0.030) | 3/266 | NT | 2.4% | intergenic (+61/‑118) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) |
| ? | NC_000913 | = 4459452 | 123 (1.070) | intergenic (+141/‑38) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) | |||||
| * | ? | NC_000913 | = 4409634 | 130 (1.080) | 3 (0.030) | 3/258 | NT | 2.3% | coding (360/732 nt) | rlmB | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 4409697 | 130 (1.170) | coding (423/732 nt) | rlmB | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 4289734 | 141 (1.170) | 3 (0.030) | 3/270 | NT | 2.2% | coding (490/567 nt) | nrfB | nitrite reductase, formate‑dependent, penta‑heme cytochrome c |
| ? | NC_000913 | = 4289754 | 134 (1.150) | coding (510/567 nt) | nrfB | nitrite reductase, formate‑dependent, penta‑heme cytochrome c | |||||
| * | ? | NC_000913 | 4284390 = | 116 (0.970) | 3 (0.030) | 3/264 | NT | 2.6% | coding (513/1650 nt) | actP | acetate transporter |
| ? | NC_000913 | 4284425 = | 114 (1.000) | coding (478/1650 nt) | actP | acetate transporter | |||||
| * | ? | NC_000913 | 4239611 = | 132 (1.100) | 3 (0.030) | 3/272 | NT | 2.2% | coding (1978/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein |
| ? | NC_000913 | 4239661 = | 138 (1.170) | coding (2028/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein | |||||