mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 287 | Δ1 bp | 5.4% | intergenic (+32/‑50) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 291 | A→T | 5.0% | intergenic (+36/‑46) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 293:1 | +G | 5.3% | intergenic (+38/‑44) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 14,124 | T→A | 5.2% | intergenic (+45/‑44) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 53,272 | T→G | 5.1% | M49L (ATG→CTG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 124,866 | A→C | 5.1% | D617A (GAC→GCC) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 125,939 | A→C | 5.9% | D82A (GAC→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,126 | G→A | 9.0% | K144K (AAG→AAA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 129,802 | T→G | 8.7% | K487Q (AAG→CAG) | yacH ← | DUF3300 family protein |
| RA | 151,519 | A→C | 5.2% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 5.5% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 167,295 | T→C | 5.1% | intergenic (+31/‑189) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 184,253 | C→A | 8.9% | intergenic (‑158/+4) | yaeH ← / ← yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 318,649 | T→C | 5.8% | intergenic (‑82/+27) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,651 | T→A | 5.9% | intergenic (‑84/+25) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,652 | T→A | 5.8% | intergenic (‑85/+24) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,654 | G→A | 5.9% | intergenic (‑87/+22) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 347,707 | C→A | 9.1% | G246V (GGG→GTG) | prpR ← | propionate catabolism operon regulatory protein |
| RA | 357,775 | A→T | 7.8% | intergenic (+321/+16) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 357,778 | C→T | 6.7% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 556,640 | T→A | 6.5% | intergenic (‑87/+21) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,641 | G→T | 6.6% | intergenic (‑88/+20) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,642 | A→C | 6.0% | intergenic (‑89/+19) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,643 | T→A | 6.5% | intergenic (‑90/+18) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 621,496 | T→G | 5.2% | S232R (AGT→CGT) | fepD ← | ferrienterobactin ABC transporter permease |
| RA | 621,506 | C→A | 5.2% | T228T (ACG→ACT) | fepD ← | ferrienterobactin ABC transporter permease |
| RA | 696,793 | T→A | 23.6% | noncoding (38/75 nt) | glnW ← | tRNA‑Gln |
| RA | 696,798 | A→G | 22.5% | noncoding (33/75 nt) | glnW ← | tRNA‑Gln |
| RA | 696,801 | A→T | 24.2% | noncoding (30/75 nt) | glnW ← | tRNA‑Gln |
| RA | 710,173 | A→G | 5.4% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 794,938 | C→A | 8.2% | intergenic (+16/‑151) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,939 | T→C | 7.0% | intergenic (+17/‑150) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,942 | G→A | 7.2% | intergenic (+20/‑147) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,943 | T→G | 7.0% | intergenic (+21/‑146) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 864,298 | G→C | 5.5% | S219S (TCG→TCC) | fsaA → | fructose‑6‑phosphate aldolase 1 |
| RA | 864,299 | A→G | 5.7% | I220V (ATT→GTT) ‡ | fsaA → | fructose‑6‑phosphate aldolase 1 |
| RA | 864,300 | T→G | 5.9% | I220S (ATT→AGT) ‡ | fsaA → | fructose‑6‑phosphate aldolase 1 |
| RA | 864,306 | C→T | 5.7% | intergenic (+2/+74) | fsaA → / ← moeB | fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase |
| RA | 864,307 | G→C | 5.7% | intergenic (+3/+73) | fsaA → / ← moeB | fructose‑6‑phosphate aldolase 1/molybdopterin synthase sulfurylase |
| RA | 935,584 | A→T | 14.5% | P787P (CCA→CCT) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 987,418 | A→T | 5.9% | intergenic (‑436/+167) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,420 | A→C | 5.5% | intergenic (‑438/+165) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,421 | A→T | 6.1% | intergenic (‑439/+164) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,422 | G→T | 6.0% | intergenic (‑440/+163) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,424 | A→T | 5.5% | intergenic (‑442/+161) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,015,912 | T→A | 5.4% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,026,539 | T→A | 5.8% | intergenic (+14/+18) | helD → / ← mgsA | DNA helicase IV/methylglyoxal synthase |
| RA | 1,026,540 | T→A | 5.0% | intergenic (+15/+17) | helD → / ← mgsA | DNA helicase IV/methylglyoxal synthase |
| RA | 1,026,541 | T→C | 5.1% | intergenic (+16/+16) | helD → / ← mgsA | DNA helicase IV/methylglyoxal synthase |
| RA | 1,063,264 | C→A | 9.9% | G171V (GGT→GTT) | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,101,543 | T→G | 8.2% | K48Q (AAA→CAA) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,548 | G→A | 7.5% | T46M (ACG→ATG) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,551 | G→T | 7.7% | P45Q (CCG→CAG) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,554 | G→C | 7.7% | A44G (GCG→GGG) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,555 | C→A | 7.7% | A44S (GCG→TCG) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,556 | T→G | 7.0% | P43P (CCA→CCC) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,557 | G→C | 7.6% | P43R (CCA→CGA) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,560 | A→C | 7.4% | L42R (CTG→CGG) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,563 | T→C | 7.7% | H41R (CAT→CGT) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,101,568 | C→A | 8.6% | L39F (TTG→TTT) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,134,662 | A→C | 6.0% | intergenic (+105/‑67) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,286,885 | T→C | 11.6% | intergenic (+359/+181) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,965 | A→G | 12.8% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| JC JC | 1,292,997 | IS1 (+) +9 bp | 68.0% | intergenic (‑75/‑522) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,015 | IS1 (+) +20 bp | 68.7% | intergenic (‑93/‑493) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,023 | IS1 (+) Δ3 bp | 65.2% | intergenic (‑101/‑502) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,299,270 | C→G | 5.0% | intergenic (+25/‑1912) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,302,827 | G→A | 5.0% | intergenic (+14/‑72) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,836 | G→C | 5.1% | intergenic (+23/‑63) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,843 | T→C | 5.2% | intergenic (+30/‑56) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,306,788 | T→C | 5.0% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,326,781 | T→A | 6.1% | intergenic (+140/‑71) | yciQ → / → rluB | enhancer of membrane protein expression; putative inner membrane protein/23S rRNA pseudouridine(2605) synthase |
| RA | 1,326,782 | G→C | 5.1% | intergenic (+141/‑70) | yciQ → / → rluB | enhancer of membrane protein expression; putative inner membrane protein/23S rRNA pseudouridine(2605) synthase |
| RA | 1,326,784 | A→T | 5.4% | intergenic (+143/‑68) | yciQ → / → rluB | enhancer of membrane protein expression; putative inner membrane protein/23S rRNA pseudouridine(2605) synthase |
| RA | 1,326,786 | G→C | 6.3% | intergenic (+145/‑66) | yciQ → / → rluB | enhancer of membrane protein expression; putative inner membrane protein/23S rRNA pseudouridine(2605) synthase |
| RA | 1,326,787 | T→A | 5.9% | intergenic (+146/‑65) | yciQ → / → rluB | enhancer of membrane protein expression; putative inner membrane protein/23S rRNA pseudouridine(2605) synthase |
| RA | 1,344,033 | A→G | 5.7% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 5.7% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 5.6% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,351,774 | G→A | 6.3% | intergenic (‑14/+54) | ycjD ← / ← sapF | DUF559 family endonuclease‑related protein/antimicrobial peptide ABC transporter ATPase |
| RA | 1,351,776 | T→G | 6.2% | intergenic (‑16/+52) | ycjD ← / ← sapF | DUF559 family endonuclease‑related protein/antimicrobial peptide ABC transporter ATPase |
| RA | 1,351,777 | T→A | 6.5% | intergenic (‑17/+51) | ycjD ← / ← sapF | DUF559 family endonuclease‑related protein/antimicrobial peptide ABC transporter ATPase |
| RA | 1,351,779 | A→T | 6.4% | intergenic (‑19/+49) | ycjD ← / ← sapF | DUF559 family endonuclease‑related protein/antimicrobial peptide ABC transporter ATPase |
| RA | 1,351,781 | T→A | 6.4% | intergenic (‑21/+47) | ycjD ← / ← sapF | DUF559 family endonuclease‑related protein/antimicrobial peptide ABC transporter ATPase |
| RA | 1,351,782 | C→A | 6.3% | intergenic (‑22/+46) | ycjD ← / ← sapF | DUF559 family endonuclease‑related protein/antimicrobial peptide ABC transporter ATPase |
| RA | 1,351,784 | T→C | 6.5% | intergenic (‑24/+44) | ycjD ← / ← sapF | DUF559 family endonuclease‑related protein/antimicrobial peptide ABC transporter ATPase |
| RA | 1,381,915 | G→T | 5.5% | intergenic (+13/‑32) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,413,029 | G→C | 6.7% | S69R (AGC→AGG) ‡ | intR ← | Rac prophage; integrase |
| RA | 1,413,031 | T→A | 6.3% | S69C (AGC→TGC) ‡ | intR ← | Rac prophage; integrase |
| RA | 1,413,033 | G→C | 7.1% | S68C (TCC→TGC) | intR ← | Rac prophage; integrase |
| JC JC | 1,421,597 | IS5 (+) +4 bp | 6.4% | coding (479‑482/858 nt) | ydaU → | Rac prophage; conserved protein |
| RA | 1,441,833 | G→C | 6.1% | intergenic (‑90/+21) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,835 | A→T | 5.6% | intergenic (‑92/+19) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,837 | G→C | 6.0% | intergenic (‑94/+17) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,449,807 | C→G | 5.5% | G515R (GGT→CGT) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,466,138 | G→A | 7.4% | pseudogene (747/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,144 | G→T | 10.2% | pseudogene (753/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,336 | C→G | 11.4% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,345 | T→C | 6.2% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,555,782 | C→T | 5.3% | intergenic (‑113/+44) | maeA ← / ← sra | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein |
| RA | 1,555,783 | A→G | 5.0% | intergenic (‑114/+43) | maeA ← / ← sra | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein |
| RA | 1,620,224 | C→G | 7.8% | intergenic (+17/+14) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,620,227 | C→G | 7.8% | intergenic (+20/+11) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,629,435 | G→A | 6.4% | intergenic (+17/+18) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,436 | A→T | 6.1% | intergenic (+18/+17) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,437 | T→C | 6.6% | intergenic (+19/+16) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,660,438 | A→G | 5.3% | S790S (TCA→TCG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,442 | C→G | 5.8% | L792V (CTG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,708,709 | T→A | 16.8% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,844 | C→G | 20.7% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,994 | A→C | 21.8% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,724,285 | G→C | 5.5% | A124G (GCT→GGT) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,736,097 | T→A | 5.9% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 5.8% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,743,155 | C→G | 7.2% | D30H (GAC→CAC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,157 | G→A | 7.6% | P29L (CCC→CTC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,160 | A→T | 6.9% | L28* (TTA→TAA) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,163 | T→C | 7.3% | E27G (GAG→GGG) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,165 | C→G | 7.6% | V26V (GTG→GTC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,747,299 | A→T | 5.4% | I57F (ATT→TTT) | ydhS → | putative oxidoreductase |
| RA | 1,816,590 | C→A | 5.4% | L182L (CTG→CTT) | chbG ← | chito‑oligosaccharide deacetylase |
| RA | 1,830,060 | G→C | 5.0% | R236G (CGC→GGC) | astA ← | arginine succinyltransferase |
| RA | 1,830,064 | A→C | 5.5% | P234P (CCT→CCG) ‡ | astA ← | arginine succinyltransferase |
| RA | 1,830,065 | G→C | 6.2% | P234R (CCT→CGT) ‡ | astA ← | arginine succinyltransferase |
| RA | 1,864,758 | G→A | 5.2% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,763 | A→T | 5.6% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,768 | T→C | 6.7% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,896,468 | T→G | 5.0% | V100G (GTG→GGG) | nudL → | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| RA | 1,927,597 | G→T | 9.6% | R415S (CGC→AGC) | ptrB ← | protease II |
| RA | 1,932,094 | C→G | 6.4% | intergenic (+35/+21) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,948,179 | T→A | 6.4% | intergenic (‑28/+1) | yebC ← / ← nudB | UPF0082 family protein/dihydroneopterin triphosphate pyrophosphatase |
| RA | 1,948,180 | T→A | 6.5% | *151C (TGA→TGT) | nudB ← | dihydroneopterin triphosphate pyrophosphatase |
| RA | 1,966,374 | C→T | 5.1% | intergenic (‑183/+19) | flhB ← / ← cheZ | flagellin export apparatus, substrate specificity protein/chemotaxis regulator, protein phosphatase for CheY |
| RA | 1,966,377 | C→T | 5.1% | intergenic (‑186/+16) | flhB ← / ← cheZ | flagellin export apparatus, substrate specificity protein/chemotaxis regulator, protein phosphatase for CheY |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,230,687 | C→A | 5.0% | L22M (CTG→ATG) | yohJ → | UPF0299 family inner membrane protein |
| RA | 2,252,810 | T→G | 5.4% | intergenic (+22/+85) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,814 | C→A | 5.7% | intergenic (+26/+81) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,820 | T→G | 5.7% | intergenic (+32/+75) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,821 | T→C | 5.8% | intergenic (+33/+74) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,270,602 | T→C | 5.6% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 5.5% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,286,139 | A→T | 7.2% | intergenic (+3/‑72) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,286,142 | T→A | 7.3% | intergenic (+6/‑69) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,286,145 | A→T | 7.1% | intergenic (+9/‑66) | yejM → / → proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro |
| RA | 2,304,523 | G→C | 10.8% | intergenic (+130/+585) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,357,653 | A→G | 7.0% | L250L (CTA→CTG) | yfaD → | transposase_31 family protein |
| JC | 2,357,874 | Δ12 bp | 7.6% | pseudogene (71‑82/198 nt) | ypaA → | pseudogene, C‑terminal fragment, Transposase_31 family |
| RA | 2,417,344 | A→T | 5.0% | E88D (GAA→GAT) | yfcC → | putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,428,038 | A→T | 5.1% | intergenic (‑247/+19) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,428,039 | A→T | 5.0% | intergenic (‑248/+18) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,438,876 | G→T | 5.3% | M309I (ATG→ATT) | flk → | putative flagella assembly protein |
| RA | 2,449,616 | C→G | 5.1% | G145A (GGG→GCG) | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,533,415 | T→A | 5.0% | intergenic (+35/‑349) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,555,201 | T→C | 7.6% | intergenic (‑19/+27) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,555,202 | G→C | 9.3% | intergenic (‑20/+26) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,555,205 | G→C | 7.5% | intergenic (‑23/+23) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,555,206 | G→A | 8.8% | intergenic (‑24/+22) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,560,985 | C→A | 11.8% | intergenic (+87/‑383) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,996 | G→T | 20.4% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,653,367 | G→A | 5.2% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,700,863 | G→C | 6.0% | P46A (CCG→GCG) | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,867 | G→C | 5.0% | H44Q (CAC→CAG) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,868 | T→C | 6.0% | H44R (CAC→CGC) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,707,320 | A→T | 6.7% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 6.7% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,731,073 | A→T | 6.7% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 5.5% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,750,073 | G→T | 5.6% | intergenic (+13/+42) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,078 | T→G | 5.5% | intergenic (+18/+37) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,081 | C→A | 6.8% | intergenic (+21/+34) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,086 | A→C | 5.6% | intergenic (+26/+29) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,757,418 | C→A | 6.2% | intergenic (+18/+226) | intA → / ← yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein |
| RA | 2,770,319 | C→G | 6.6% | P206R (CCG→CGG) | yfjR → | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| RA | 2,804,531 | G→T | 15.3% | intergenic (+70/‑284) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein/glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 2,810,872 | C→T | 6.4% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 6.4% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,972,652 | A→T | 5.2% | intergenic (+15/+17) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,972,653 | A→T | 5.2% | intergenic (+16/+16) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 3,146,761 | T→G | 5.1% | intergenic (‑24/+95) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,146,762 | G→A | 5.2% | intergenic (‑25/+94) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,146,763 | T→C | 5.2% | intergenic (‑26/+93) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,146,764 | C→A | 5.1% | intergenic (‑27/+92) | yghW ← / ← yghX | DUF2623 family protein/pseudogene, dienlactone hydrolase family |
| RA | 3,156,591 | T→G | 6.0% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,183,345:1 | +T | 5.1% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,233,708 | A→G | 5.2% | intergenic (+25/+20) | fadH → / ← higA | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked/antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,233,710 | C→T | 5.1% | intergenic (+27/+18) | fadH → / ← higA | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked/antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,250,989 | G→C | 6.5% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,990 | A→T | 6.6% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,991 | A→T | 7.1% | intergenic (+37/‑33) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,992 | G→C | 6.7% | intergenic (+38/‑32) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,263,500 | G→A | 5.1% | P54L (CCG→CTG) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,291,109 | A→T | 6.5% | K766* (AAA→TAA) | yraJ → | putative outer membrane protein |
| RA | 3,323,492 | C→A | 5.2% | V193V (GTG→GTT) | glmM ← | phosphoglucosamine mutase |
| RA | 3,324,952 | A→G | 5.4% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 5.4% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 5.4% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 5.3% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,334,704 | G→C | 5.2% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,368,982 | G→C | 6.3% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,430,948 | T→G | 5.1% | A156A (GCA→GCC) | tsaC ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine‑dependent ADP‑forming ATPase |
| RA | 3,458,110 | C→A | 100% | T578T (ACC→ACA) | gspD → | general secretory pathway component, cryptic |
| RA | 3,469,041 | A→G | 5.6% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,482,325 | G→A | 100% | R346H (CGC→CAC) | yheS → | ABC‑F family protein predicted regulatory ATPase |
| RA | 3,530,671 | A→C | 5.4% | intergenic (+19/+44) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,672 | G→C | 5.1% | intergenic (+20/+43) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,674 | G→T | 5.9% | intergenic (+22/+41) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,599,755 | C→A | 5.6% | intergenic (‑97/+174) | livJ ← / ← rpoH | branched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| RA | 3,599,756 | A→G | 5.5% | intergenic (‑98/+173) | livJ ← / ← rpoH | branched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| RA | 3,599,759 | C→T | 5.5% | intergenic (‑101/+170) | livJ ← / ← rpoH | branched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| RA | 3,599,760 | T→G | 5.6% | intergenic (‑102/+169) | livJ ← / ← rpoH | branched‑chain amino acid ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| RA | 3,610,544 | T→C | 5.5% | H397R (CAC→CGC) | yhhS ← | putative arabinose efflux transporter |
| RA | 3,719,803 | A→T | 5.5% | intergenic (+35/‑246) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,719,804 | T→C | 5.8% | intergenic (+36/‑245) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,719,805 | G→A | 5.7% | intergenic (+37/‑244) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,719,806 | A→T | 5.5% | intergenic (+38/‑243) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,720,793 | G→T | 5.8% | Q38H (CAG→CAT) | insJ → | IS150 transposase A |
| RA | 3,720,797 | A→C | 5.1% | R40R (AGG→CGG) ‡ | insJ → | IS150 transposase A |
| RA | 3,720,798 | G→T | 5.8% | R40M (AGG→ATG) ‡ | insJ → | IS150 transposase A |
| RA | 3,720,802 | A→C | 5.1% | T41T (ACA→ACC) | insJ → | IS150 transposase A |
| RA | 3,741,091 | G→T | 5.3% | intergenic (+133/+18) | avtA → / ← ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,819,810 | A→T | 8.0% | L454* (TTA→TAA) | ligB ← | DNA ligase, NAD(+)‑dependent |
| RA | 3,832,800 | C→A | 5.3% | A580S (GCG→TCG) | yicI ← | putative alpha‑glucosidase |
| RA | 3,891,502 | C→G | 5.5% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 6.2% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 5.3% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,896,350 | G→T | 5.3% | A87E (GCA→GAA) | adeP ← | adenine permease, high affinity; adenine:H+ symporter |
| RA | 3,918,296 | C→T | 5.2% | intergenic (‑31/+20) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,937,143 | A→T | 7.7% | D289V (GAT→GTT) | rbsB → | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor |
| RA | 3,947,049 | A→T | 5.2% | intergenic (+17/+79) | trpT → / ← hdfR | tRNA‑Trp/flhDC operon transcriptional repressor |
| RA | 3,947,051 | A→C | 5.3% | intergenic (+19/+77) | trpT → / ← hdfR | tRNA‑Trp/flhDC operon transcriptional repressor |
| RA | 3,959,515 | T→A | 5.9% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,991,334 | T→A | 5.8% | I61N (ATT→AAT) | cyaA → | adenylate cyclase |
| RA | 4,024,378 | T→A | 5.2% | K148N (AAA→AAT) | rfaH ← | transcription antitermination protein |
| RA | 4,024,382 | T→A | 5.2% | N147I (AAT→ATT) | rfaH ← | transcription antitermination protein |
| RA | 4,062,371 | A→T | 5.4% | N42I (AAT→ATT) | yihN → | MFS transporter family protein |
| RA | 4,094,415 | T→G | 6.6% | intergenic (‑143/+308) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,177,171 | T→A | 5.5% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 5.3% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,183,258 | G→A | 6.5% | E672K (GAA→AAA) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,060 | C→T | 39.1% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,303,796 | G→A | 5.1% | T105I (ACC→ATC) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,303,803 | T→A | 5.4% | M103L (ATG→TTG) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,303,807 | T→A | 5.2% | Q101H (CAA→CAT) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,306,090 | G→T | 6.1% | Q170K (CAA→AAA) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,307,339 | C→A | 6.3% | W154L (TGG→TTG) | alsK ← | D‑allose kinase |
| RA | 4,309,875 | T→G | 5.1% | K369T (AAA→ACA) | alsA ← | D‑allose ABC transporter ATPase |
| RA | 4,353,170 | G→A | 7.6% | intergenic (+89/+30) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,171 | C→G | 7.6% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,172 | C→G | 7.6% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,173 | T→C | 7.8% | intergenic (+92/+27) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,371,932 | A→C | 5.4% | E303A (GAA→GCA) | groL → | Cpn60 chaperonin GroEL, large subunit of GroESL |
| RA | 4,390,403 | A→G | 5.5% | intergenic (‑43/+54) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,415,523 | G→C | 7.1% | E417Q (GAG→CAG) ‡ | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,415,525 | G→T | 7.1% | E417D (GAG→GAT) ‡ | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,415,526 | A→C | 7.1% | M418L (ATG→CTG) ‡ | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,415,528 | G→C | 6.9% | M418I (ATG→ATC) ‡ | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,473,927 | C→A | 100% | A43S (GCC→TCC) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,502,107 | G→T | 5.4% | A442D (GCT→GAT) | insG ← | IS4 transposase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 448618 | 450732 | 2115 | 70 [69] | [68] 70 | [cyoC]–[cyoA] | [cyoC],cyoB,[cyoA] |
| * | * | ÷ | NC_000913 | 2403900 | 2404677 | 778 | 71 [69] | [69] 70 | nuoB–[nuoA] | nuoB,[nuoA] |
| * | * | ÷ | NC_000913 | 2947406–2947443 | 2947647–2947609 | 167–242 | 71 [69] | [69] 70 | [metZ]–[metV] | [metZ],metW,[metV] |
| * | * | ÷ | NC_000913 | 3423708–3424234 | 3424612–3424238 | 5–905 | 71 [69] | [69] 70 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 4 (0.040) | 4/264 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 224368 = | NA (NA) | 5 (0.040) | 4/264 | NT | NA | noncoding (598/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224411 = | NA (NA) | noncoding (641/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 8 (0.070) | 8/270 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 3 (0.020) | 3/278 | NT | 15.8% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1293005 | 16 (0.130) | intergenic (‑83/‑522) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 274209 = | NA (NA) | 4 (0.030) | 4/268 | NT | NA | noncoding (941/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274224 = | NA (NA) | noncoding (926/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 4 (0.040) | 4/264 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 3 (0.030) | 3/272 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 8 (0.070) | 6/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 3 (0.030) | 3/270 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 4 (0.040) | 4/258 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315991 = | NA (NA) | 4 (0.030) | 4/270 | NT | NA | noncoding (763/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 316014 = | NA (NA) | noncoding (786/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 316193 = | NA (NA) | 5 (0.040) | 3/260 | NT | NA | noncoding (965/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 316230 = | NA (NA) | noncoding (1002/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 6 (0.050) | 5/260 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 13 (0.110) | 7/264 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 5 (0.040) | 5/260 | NT | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 696863 = | 42 (0.350) | 20 (0.180) +GAAGAAACAATC |
8/254 | NT | 21.5% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | = 697134 | 118 (0.980) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | 781369 = | 68 (0.570) | 19 (0.160) +GAAG |
14/270 | NT | 26.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 42 (0.350) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 781446 | 67 (0.560) | 5 (0.040) | 5/278 | NT | 5.2% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | = 2521361 | 116 (0.970) | intergenic (+33/+232) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | 1207790 = | 25 (0.210) | 45 (0.420) | 39/246 | NT | 59.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 39 (0.370) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 25 (0.210) | 63 (0.590) | 51/246 | NT | 67.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 39 (0.370) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1269275 | NA (NA) | 7 (0.060) | 4/262 | NT | 6.7% | coding (1/108 nt) | ldrA | toxic polypeptide, small |
| ? | NC_000913 | = 1269313 | 104 (0.870) | intergenic (‑38/‑10) | ldrA/rdlA | toxic polypeptide, small/sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA | |||||
| * | ? | NC_000913 | = 1293038 | 23 (0.190) | 3 (0.020) | 3/278 | NT | 11.5% | intergenic (‑116/‑489) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 142 (1.220) | 99/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 7 (0.060) | 5/266 | NT | 6.0% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 114 (0.950) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1733862 | 95 (0.790) | 6 (0.050) | 5/264 | NT | 6.1% | coding (240/348 nt) | grxD | glutaredoxin‑4 |
| ? | NC_000913 | = 1733891 | 94 (0.820) | coding (211/348 nt) | grxD | glutaredoxin‑4 | |||||
| * | ? | NC_000913 | 2268409 = | 109 (0.910) | 6 (0.050) | 4/270 | NT | 5.5% | coding (581/987 nt) | yeiR | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein |
| ? | NC_000913 | 2268447 = | 102 (0.870) | coding (619/987 nt) | yeiR | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein | |||||
| * | ? | NC_000913 | = 2651755 | 96 (0.800) | 5 (0.040) | 4/262 | NT | 5.1% | coding (533/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| ? | NC_000913 | = 2651772 | 97 (0.860) | coding (516/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein | |||||
| * | ? | NC_000913 | 2726032 = | 123 (1.020) | 10 (0.090) +CGCAT |
3/268 | NT | 9.4% | intergenic (‑286/+37) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 3423662 = | 76 (0.630) | intergenic (‑7/+6) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3036575 = | 112 (0.930) | 6 (0.050) | 5/258 | NT | 5.5% | coding (1532/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | NC_000913 | 3036618 = | 103 (0.920) | coding (1489/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | NC_000913 | = 3304484 | NA (NA) | 3 (0.030) | 3/256 | NT | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | NC_000913 | = 3304553 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||
| * | ? | NC_000913 | = 3411602 | 89 (0.740) | 6 (0.050) | 6/256 | NT | 7.0% | intergenic (+35/‑51) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3411616 | 78 (0.710) | intergenic (+49/‑37) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 3603646 = | 123 (1.020) | 6 (0.050) | 5/268 | NT | 5.1% | coding (598/1494 nt) | ftsY | Signal Recognition Particle (SRP) receptor |
| ? | NC_000913 | 3603693 = | 104 (0.900) | coding (551/1494 nt) | ftsY | Signal Recognition Particle (SRP) receptor | |||||
| * | ? | NC_000913 | 3620123 = | NA (NA) | 4 (0.030) | 3/266 | NT | 100% | coding (932/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620147 = | 0 (0.000) | coding (956/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 4569947 = | NA (NA) | 3 (0.030) | 3/266 | NT | NA | noncoding (2/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4569970 = | NA (NA) | noncoding (25/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||