mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1440443 | 87 (1.960) | 4 (0.100) | 3/250 | NT | 4.6% | coding (342/3525 nt) | ydbK | putative pyruvate‑flavodoxin oxidoreductase |
| ? | NC_000913 | = 1440464 | 83 (1.970) | coding (321/3525 nt) | ydbK | putative pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | NC_000913 | = 572411 | 867 (19.510) | 9 (0.210) | 7/250 | NT | 1.3% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 527 (12.530) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572405 = | 944 (21.250) | 11 (0.320) +31 bp |
9/202 | NT | 1.5% | coding (38/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 1095504 | NA (NA) | intergenic (‑67/‑40) | insE‑4/ymdE | IS3 element protein InsE/protein YmdE | |||||
| * | ? | NC_000913 | = 572325 | 2070 (46.590) | 18 (0.440) | 15/244 | NT | 0.91% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 2010 (48.980) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 570695 = | 2243 (50.480) | 35 (0.830) | 18/250 | NT | 1.7% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 1950 (46.360) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570627 = | 2729 (61.420) | 14 (0.350) | 8/238 | NT | 0.59% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 2251 (56.240) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 569768 = | 2673 (60.160) | 4 (0.100) | 3/248 | NT | 0.16% | coding (867/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | 569802 = | 2363 (56.640) | coding (901/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 569053 = | 2947 (66.330) | 3 (0.070) | 3/252 | NT | 0.11% | coding (152/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | 569077 = | 2668 (62.930) | coding (176/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | = 568908 | 2684 (60.410) | 5 (0.120) | 5/250 | NT | 0.19% | coding (7/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 568928 | 2721 (64.700) | coding (27/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 568678 = | 2965 (66.730) | 25 (0.590) | 17/250 | NT | 0.90% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 2689 (63.940) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||