mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,034,021 | 0 | G | A | 35.3% | 235.1 / 271.7 | 258 | intergenic (+25/+245) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| Marginal new junction evidence (lowest skew 10 of 64 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3416618 = | 139 (0.830) | 61 (0.020) +GAATTAATTCCCC |
40/224 | 9.1 | 32.9% | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| ? | KX077536 | 8127 = | NA (NA) | intergenic (+52/–) | unknown/– | cat/– | |||||
| * | ? | CP009273 | 360104 = | 148 (0.880) | 63 (0.020) +AATTCCCC |
42/234 | 9.2 | 31.3% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | KX077536 | 8127 = | NA (NA) | intergenic (+52/–) | unknown/– | cat/– | |||||
| * | ? | CP009273 | = 4161770 | 52 (0.310) | 14 (0.000) +G |
14/248 | 21.2 | 1.4% | intergenic (+86/‑215) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | KX077536 | 33 = | 1900 (0.240) | intergenic (–/‑1066) | –/unknown | –/BLA | |||||
| * | ? | CP009273 | 360187 = | 117 (0.700) | 14 (0.000) +G |
14/248 | 21.2 | 1.4% | intergenic (‑121/+474) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | KX077536 | 33 = | 1900 (0.240) | intergenic (–/‑1066) | –/unknown | –/BLA | |||||
| * | ? | CP009273 | 1203246 = | 160 (0.950) | 10 (0.070) | 10/218 | 21.6 | 6.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 129 (0.880) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 4034089 | 96 (0.570) | 3 (0.000) | 3/174 | 23.9 | 8.3% | intergenic (+93/+177) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | KX077536 | 39 = | 0 (0.000) | intergenic (–/‑1060) | –/unknown | –/BLA | |||||
| * | ? | CP009273 | = 4034082 | 101 (0.600) | 8 (0.000) +G |
8/248 | 25.1 | 0.80% | intergenic (+86/+184) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | KX077536 | 33 = | 1900 (0.240) | intergenic (–/‑1066) | –/unknown | –/BLA | |||||
| * | ? | CP009273 | = 1203261 | 149 (0.890) | 5 (0.030) | 5/218 | 25.5 | 3.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 128 (0.870) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 3416716 = | 152 (0.900) | 4 (0.000) +21 bp |
4/208 | 25.7 | 0.47% | intergenic (+163/+66) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| ? | KX077536 | 33 = | 1903 (0.240) | intergenic (–/‑1066) | –/unknown | –/BLA | |||||
| * | ? | CP009273 | 2090742 = | NA (NA) | 3 (0.000) +25 bp |
3/200 | 26.2 | 0.043% | noncoding (25/30 nt) | REP143 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP143 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | KX077536 | = 965 | 8831 (1.120) | intergenic (–/‑134) | –/unknown | –/BLA | |||||