mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | insH21 | insH21 | |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 1,994,744:1 | +A | 15.4% | coding (616/657 nt) | uvrY ← | DNA‑binding transcriptional activator UvrY |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,674,576 | T→A | 10.0% | intergenic (+201/‑210) | yhjD → / → yhjE | putative transporter YhjD/putative transporter YhjE |
| RA | 3,815,877 | Δ1 bp | 56.3% | coding (673/687 nt) | rph ← | truncated RNase PH |
| RA | 3,815,880 | C→T | 60.6% | E224K (GAA→AAA) | rph ← | truncated RNase PH |
| RA | 4,183,378 | T→C | 35.8% | S712P (TCC→CCC) | rpoB → | RNA polymerase subunit beta |
| RA | 4,296,060 | C→T | 26.3% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,479,020 | A→T | 27.4% | intergenic (+131/+14) | rraB → / ← yjgM | ribonuclease E inhibitor protein B/putative acetyltransferase YjgM |
| RA | 4,496,351 | C→T | 23.8% | intergenic (‑142/‑54) | ahr ← / → leuX | aldehyde reductase, NADPH‑dependent/tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 863004 | 863059 | 56 | 3 [2] | [2] 4 | ybiY | putative pyruvate formate‑lyase activating enzyme YbiY |
| * | * | ÷ | NC_000913 | 2075316 | 2075348 | 33 | 3 [0] | [2] 4 | yeeR | CP4‑44 prophage; inner membrane protein YeeR |
| * | * | ÷ | NC_000913 | 2442108 | 2442116 | 9 | 3 [0] | [0] 5 | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme |
| * | * | ÷ | NC_000913 | 3423896–3424233 | 3424403–3424240 | 8–508 | 3 [2] | [2] 3 | rrlD | 23S ribosomal RNA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 7 (0.360) | 10 (0.560) | 10/352 | NT | 53.5% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 11 (0.620) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 7 (0.360) | 10 (0.560) | 9/352 | NT | 53.5% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 11 (0.620) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 2050717 = | 14 (0.720) | 3 (0.160) | 3/372 | NT | 16.0% | coding (5780/7077 nt) | yeeJ | inverse autotransporter adhesin |
| ? | NC_000913 | 2050832 = | 18 (0.950) | coding (5895/7077 nt) | yeeJ | inverse autotransporter adhesin | |||||