mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,232,468 | 0 | A | G | 54.5% | ‑4.2 / 20.8 | 22 | intergenic (+14/+32) | umuC/dsbB | DNA polymerase V catalytic protein/protein thiol:quinone oxidoreductase DsbB |
| * | NC_000913 | 395,288 | 0 | A | T | 50.0% | ‑5.1 / 68.6 | 36 | F334I (TTC→ATC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 395,291 | 0 | C | G | 47.2% | ‑0.8 / 64.8 | 36 | G333R (GGT→CGT) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 395,294 | 0 | C | G | 47.1% | 2.9 / 56.9 | 34 | G332R (GGC→CGC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 310,934 | 0 | A | C | 46.5% | 38.2 / 35.2 | 44 | F135V (TTC→GTC) | ecpR | DNA‑binding transcriptional dual regulator MatA |
| * | NC_000913 | 296,504 | 0 | T | G | 46.2% | 1.0 / 15.1 | 13 | N198T (AAC→ACC) | intF | CP4‑6 prophage; putative phage integrase |
| * | NC_000913 | 3,563,481 | 0 | T | G | 42.3% | 26.4 / 23.7 | 26 | V490G (GTG→GGG) | glpD | aerobic glycerol 3‑phosphate dehydrogenase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.6% | 58.7 / 57.8 | 59 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,374,034 | 0 | G | . | 33.3% | 20.5 / 12.3 | 12 | coding (813/882 nt) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 2,349,621 | 0 | A | C | 33.3% | 16.5 / 13.7 | 15 | intergenic (‑149/‑66) | inaA/yfaH | putative lipopolysaccharide kinase InaA/putative uncharacterized protein YfaH |
| * | NC_000913 | 1,711,796 | 0 | A | C | 32.0% | 47.2 / 14.2 | 25 | T92P (ACC→CCC) | nth | endonuclease III |
| * | NC_000913 | 1,374,039 | 0 | T | G | 29.4% | 25.8 / 11.9 | 17 | F273C (TTC→TGC) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 854,113 | 0 | T | A | 29.2% | 47.1 / 11.2 | 24 | F156Y (TTT→TAT) | ybiR | putative transporter YbiR |
| * | NC_000913 | 794,976 | 0 | T | C | 28.9% | 64.8 / 11.2 | 38 | intergenic (+54/‑113) | acrZ/modA | multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,434,974 | 0 | T | A | 22.7% | 50.5 / 12.7 | 22 | I254N (ATT→AAT) | fmt | 10‑formyltetrahydrofolate:L‑methionyl‑tRNA(fMet) N‑formyltransferase |
| * | NC_000913 | 3,574,851 | 0 | G | C | 21.9% | 84.0 / 12.3 | 32 | R10G (CGC→GGC) | asd | aspartate‑semialdehyde dehydrogenase |
| * | NC_000913 | 151,656 | 0 | T | G | 20.0% | 180.5 / 32.2 | 65 | A192A (GCA→GCC) | yadL | putative fimbrial protein YadL |