breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,568,504	0	T	G	41.2%	157.5 / 22.0	97	T6P (ACC→CCC)	mdtM	multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
*	NC_000913	4,604,344	0	C	T	38.4%	75.8 / 48.1	73	S62F (TCT→TTT)	bglJ	DNA‑binding transcriptional regulator BglJ
*	NC_000913	445,558	0	A	C	36.4%	50.4 / 10.3	33	V370G (GTA→GGA)	yajR	putative major facilitator superfamily transport protein YajR
*	NC_000913	4,111,747	0	G	T	31.4%	73.9 / 21.2	35	N156K (AAC→AAA)	yiiQ	DUF1454 domain‑containing protein YiiQ
*	NC_000913	753,125	0	T	A	29.1%	103.1 / 23.6	55	intergenic (‑330/+60)	ybgD/gltA	putative fimbrial protein YbgD/citrate synthase
*	NC_000913	3,206,435	0	C	T	24.5%	105.5 / 20.8	53	intergenic (‑179/‑28)	ttdR/ttdA	DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha
*	NC_000913	1,068,173	0	T	G	22.9%	208.5 / 10.3	83	G31G (GGT→GGG)	ymdF	conserved protein YmdF
*	NC_000913	4,296,060	0	C	T	22.4%	126.6 / 29.5	58	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 735576	95 (1.220)	3 (0.040)	3/278	7.7	3.1%	pseudogene (1357/1434 nt)	ybfO	conserved protein, rhs‑like YbfO
	?	NC_000913	735591 =	93 (1.190)					pseudogene (1372/1434 nt)	ybfO	conserved protein, rhs‑like YbfO